Wall clock time and date at job start Tue Mar 31 2020 20:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 C 1.53000 * 109.47214 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47215 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99813 * 179.97438 * 7 6 5 9 9 O 1.21605 * 120.00277 * 359.97438 * 8 7 6 10 10 C 1.43204 * 119.99592 * 179.97438 * 8 7 6 11 11 C 8.34472 * 150.67030 * 113.22512 * 2 1 3 12 12 C 9.65807 * 154.84529 * 111.55000 * 2 1 3 13 13 C 1.52996 * 117.49970 * 198.32324 * 12 11 10 14 14 C 1.52994 * 117.49900 * 129.66149 * 12 11 10 15 15 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 16 16 C 1.34777 * 120.00258 * 85.00009 * 15 2 1 17 17 O 1.21279 * 120.00166 * 359.97438 * 16 15 2 18 18 C 1.50706 * 119.99762 * 179.97438 * 16 15 2 19 19 S 1.81003 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99846 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00030 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99637 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99688 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00457 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47357 * 89.99660 * 24 22 20 26 26 H 1.48495 * 109.47496 * 209.99879 * 24 22 20 27 27 H 1.48500 * 109.46916 * 330.00121 * 24 22 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 30 30 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 31 31 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 32 32 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 33 33 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 34 34 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 35 35 H 1.09004 * 109.46768 * 299.99665 * 6 5 4 36 36 H 1.09003 * 109.47442 * 59.99732 * 6 5 4 37 37 H 0.96999 * 119.99924 * 359.97438 * 7 6 5 38 38 H 1.09000 * 115.54743 * 343.99407 * 12 11 10 39 39 H 1.09000 * 117.49834 * 359.97438 * 13 12 11 40 40 H 1.08996 * 117.50247 * 145.02395 * 13 12 11 41 41 H 1.09004 * 117.50175 * 214.98368 * 14 12 11 42 42 H 1.09006 * 117.49713 * 359.97438 * 14 12 11 43 43 H 0.96999 * 119.99694 * 264.99399 * 15 2 1 44 44 H 1.09000 * 109.47318 * 299.99141 * 18 16 15 45 45 H 1.09000 * 109.47161 * 59.99772 * 18 16 15 46 46 H 0.97002 * 120.00245 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 6 4.0749 -1.3347 2.5627 7 7 5.5349 -1.2308 2.6247 8 6 6.2078 -1.7957 3.6467 9 8 5.6032 -2.3914 4.5175 10 6 7.6350 -1.6945 3.7070 11 6 8.8050 -1.6119 3.7563 12 6 10.2721 -1.5079 3.8183 13 6 10.8672 -0.1742 4.2744 14 6 10.9588 -0.5909 2.8043 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4118 18 6 2.6500 -0.7286 -3.5874 19 16 2.7100 0.4342 -4.9733 20 6 3.3147 -0.6306 -6.2401 21 1 3.5255 -1.6666 -6.0197 22 6 3.5211 -0.1376 -7.5211 23 7 3.9724 -0.9333 -8.4677 24 14 3.1586 1.6548 -7.9018 25 1 4.3772 2.4685 -7.6605 26 1 2.7493 1.7861 -9.3232 27 1 2.0611 2.1350 -7.0243 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2056 33 1 3.9995 -1.0726 0.4260 34 1 3.8531 0.4372 1.3574 35 1 3.6403 -0.8755 3.4506 36 1 3.7866 -2.3850 2.5187 37 1 6.0172 -0.7553 1.9303 38 1 10.7960 -2.4185 4.1091 39 1 10.1724 0.6264 4.5280 40 1 11.7828 -0.2072 4.8647 41 1 11.9348 -0.8979 2.4281 42 1 10.3243 -0.0649 2.0909 43 1 2.2491 -1.6317 -1.1525 44 1 3.6494 -1.1203 -3.3979 45 1 1.9778 -1.5509 -3.8325 46 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735017640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:37 Heat of formation + Delta-G solvation = -40.783286 kcal Electronic energy + Delta-G solvation = -24710.758358 eV Core-core repulsion = 20920.258858 eV Total energy + Delta-G solvation = -3790.499500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.93980 -40.71525 -38.53295 -37.84151 -36.17375 -34.67142 -34.07335 -33.38305 -31.84580 -29.95954 -27.84684 -27.69015 -25.42798 -23.36122 -23.31930 -22.61439 -22.29932 -21.53184 -19.89859 -19.77423 -17.97814 -17.60886 -17.57143 -17.18363 -17.03037 -16.77479 -16.41708 -16.00992 -15.88620 -15.36731 -15.32618 -14.95882 -14.73798 -14.69277 -14.14923 -13.63646 -13.55986 -13.45652 -13.33861 -13.19412 -13.06917 -12.99910 -12.64713 -12.53129 -12.47149 -12.44344 -12.25415 -11.92063 -11.83511 -11.68499 -11.55398 -11.17047 -11.14283 -10.91959 -10.78245 -10.52563 -10.26629 -10.08347 -8.98737 -8.51501 -6.21907 0.35017 1.00588 1.08990 1.31160 1.47223 1.57266 1.61874 1.93943 2.24097 2.27004 2.30827 2.73320 2.86705 2.98515 3.08324 3.59931 3.80027 3.91081 3.95867 3.99270 4.01387 4.04855 4.25043 4.27026 4.39190 4.45030 4.48696 4.53246 4.68305 4.72542 4.75016 4.85573 4.89858 4.95165 5.05339 5.06230 5.17186 5.18867 5.20975 5.33730 5.37714 5.60112 5.70759 6.08034 6.11568 6.27226 6.53779 6.92733 6.93769 7.26376 8.60857 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008577 B = 0.002034 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.668165 B =13759.876882 C =16318.802364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.121 3.879 7 N -0.704 5.704 8 C 0.634 3.366 9 O -0.569 6.569 10 C -0.268 4.268 11 C -0.026 4.026 12 C -0.091 4.091 13 C -0.151 4.151 14 C -0.153 4.153 15 N -0.707 5.707 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.113 4.113 19 S -0.176 6.176 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.237 1.237 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.415 0.585 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.646 -0.562 27.862 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.002 4.002 7 N -0.355 5.355 8 C 0.421 3.579 9 O -0.450 6.450 10 C -0.271 4.271 11 C -0.029 4.029 12 C -0.108 4.108 13 C -0.188 4.188 14 C -0.189 4.189 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.264 4.264 19 S 0.051 5.949 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.186 1.186 26 H -0.185 1.185 27 H -0.161 1.161 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.172 0.828 39 H 0.113 0.887 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.252 0.748 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.731 0.935 28.202 29.010 hybrid contribution 0.533 -1.272 -1.068 1.745 sum 7.264 -0.338 27.134 28.092 Atomic orbital electron populations 1.22155 0.94856 1.02862 1.02105 1.21055 0.94321 0.97038 0.83796 0.91211 1.21742 0.94048 1.02513 0.96671 1.21762 0.96621 1.01317 0.96742 1.21534 0.77629 1.01698 0.99320 1.45840 1.08909 1.55235 1.25487 1.14777 0.82774 0.78488 0.81819 1.90827 1.69590 1.44292 1.40276 1.20658 0.92735 1.06705 1.07024 1.22131 0.92870 0.93235 0.94646 1.19307 0.82723 0.98936 1.09846 1.23246 1.03208 0.94231 0.98075 1.23259 1.02708 1.00270 0.92689 1.45900 1.67169 1.14572 1.08428 1.19891 0.76820 0.86561 0.84544 1.90688 1.50805 1.17528 1.85112 1.23294 1.06088 1.02222 0.94761 1.84706 1.86933 1.18730 1.04578 1.22469 1.50002 0.98302 0.96824 0.92013 1.25583 0.93299 1.02288 0.94965 1.70020 1.44541 1.37733 1.03230 0.85855 0.80998 0.79964 0.79478 1.18628 1.18457 1.16096 0.91085 0.89775 0.94972 0.88143 0.89115 0.90803 0.90934 0.90904 0.90900 0.74771 0.82770 0.88701 0.85123 0.85293 0.88567 0.74822 0.86909 0.87137 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.48 71.98 0.68 -2.06 16 2 C 0.14 2.41 2.57 44.99 0.12 2.53 16 3 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 4 C -0.11 -1.06 4.75 30.59 0.15 -0.91 16 5 C -0.13 -1.34 5.22 30.59 0.16 -1.18 16 6 C 0.12 1.56 5.67 86.38 0.49 2.05 16 7 N -0.70 -10.98 5.55 -470.74 -2.61 -13.60 16 8 C 0.63 14.32 7.65 85.49 0.65 14.97 16 9 O -0.57 -17.02 17.08 -4.05 -0.07 -17.09 16 10 C -0.27 -5.61 13.61 30.02 0.41 -5.20 16 11 C -0.03 -0.45 13.47 31.13 0.42 -0.03 16 12 C -0.09 -0.88 6.21 -12.60 -0.08 -0.95 16 13 C -0.15 -0.97 10.21 30.62 0.31 -0.66 16 14 C -0.15 -1.02 10.21 30.62 0.31 -0.71 16 15 N -0.71 -14.37 4.53 -442.54 -2.00 -16.38 16 16 C 0.54 17.15 7.81 87.66 0.68 17.83 16 17 O -0.56 -22.89 15.53 -3.03 -0.05 -22.94 16 18 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 19 S -0.18 -8.72 18.55 -56.49 -1.05 -9.77 16 20 C -0.53 -30.41 10.04 67.96 0.68 -29.73 16 21 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 22 C 0.04 2.56 5.50 84.86 0.47 3.03 16 23 N -0.92 -55.50 13.97 21.65 0.30 -55.20 16 24 Si 0.92 44.64 27.74 68.60 1.90 46.54 16 25 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.84 7.75 -2.39 -0.02 0.82 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.42 4.85 8.44 -92.71 -0.78 4.07 16 38 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.13 0.39 8.14 -2.38 -0.02 0.37 16 42 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.41 5.90 8.60 -92.71 -0.80 5.10 16 44 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 45 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 46 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.44 413.32 1.70 -79.73 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.62 Total: 13.35 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.90 Total: -4.65 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -4.31 Total: -85.17 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.12 Total: -40.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.05 Total: -9.77 kcal Total: -81.44 1.70 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735017640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -81.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds