Wall clock time and date at job start Tue Mar 31 2020 20:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.48035 * 2 1 4 4 C 1.53009 * 109.47231 * 239.99783 * 2 1 3 5 5 C 1.52999 * 109.47020 * 175.00609 * 4 2 1 6 6 H 1.09000 * 109.47160 * 304.99726 * 5 4 2 7 7 C 1.53006 * 109.46626 * 185.00095 * 5 4 2 8 8 N 1.46492 * 109.47381 * 64.99945 * 5 4 2 9 9 C 1.34781 * 119.99920 * 204.99632 * 8 5 4 10 10 O 1.21274 * 119.99803 * 0.02562 * 9 8 5 11 11 C 1.50697 * 119.99747 * 180.02562 * 9 8 5 12 12 S 1.81008 * 109.47095 * 180.02562 * 11 9 8 13 13 C 1.76197 * 100.00235 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99917 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00124 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99921 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47584 * 59.99721 * 17 15 13 19 19 H 1.48508 * 109.46887 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47236 * 299.99656 * 17 15 13 21 21 N 1.46503 * 109.47198 * 120.00087 * 2 1 3 22 22 C 1.34776 * 120.00063 * 275.00275 * 21 2 1 23 23 O 1.21610 * 119.99795 * 359.97438 * 22 21 2 24 24 C 1.43203 * 120.00103 * 179.97438 * 22 21 2 25 25 C 4.88639 * 107.70059 * 105.53573 * 2 1 3 26 26 C 6.32548 * 108.20529 * 108.84326 * 2 1 3 27 27 C 1.53005 * 117.50067 * 285.97757 * 26 25 24 28 28 C 1.53001 * 60.00016 * 252.51177 * 27 26 25 29 29 H 1.09004 * 109.47038 * 59.99597 * 1 2 3 30 30 H 1.08997 * 109.47799 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47446 * 300.00613 * 1 2 3 32 32 H 1.08993 * 109.46833 * 55.00057 * 4 2 1 33 33 H 1.09005 * 109.46493 * 295.00330 * 4 2 1 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 5 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47050 * 299.99699 * 7 5 4 37 37 H 0.96998 * 120.00176 * 25.00271 * 8 5 4 38 38 H 1.09006 * 109.47530 * 299.99941 * 11 9 8 39 39 H 1.08998 * 109.47252 * 60.00349 * 11 9 8 40 40 H 0.97000 * 119.99547 * 180.02562 * 16 15 13 41 41 H 0.97001 * 120.00103 * 94.99033 * 21 2 1 42 42 H 1.08997 * 115.55385 * 71.69092 * 26 25 24 43 43 H 1.08998 * 117.49802 * 359.97438 * 27 26 25 44 44 H 1.09004 * 117.49931 * 145.02534 * 27 26 25 45 45 H 1.09004 * 117.49924 * 252.50498 * 28 27 26 46 46 H 1.09007 * 117.51724 * 107.48146 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0644 -1.2253 -2.6240 8 7 4.1535 -1.3343 -0.1823 9 6 5.3747 -0.9913 0.2734 10 8 5.9858 -0.0855 -0.2528 11 6 5.9805 -1.7333 1.4367 12 16 7.6120 -1.0432 1.8088 13 6 8.0751 -2.0671 3.1659 14 1 7.4042 -2.8385 3.5139 15 6 9.3018 -1.8815 3.7883 16 7 10.1192 -0.9410 3.3644 17 14 9.7930 -2.9675 5.2266 18 1 9.8242 -4.3859 4.7880 19 1 11.1396 -2.5696 5.7100 20 1 8.8060 -2.8107 6.3250 21 7 2.0183 -0.6906 1.1962 22 6 2.1469 -0.0183 2.3572 23 8 1.8581 1.1617 2.4117 24 6 2.6238 -0.6935 3.5265 25 6 3.0156 -1.2468 4.4850 26 6 3.5061 -1.9407 5.6868 27 6 2.8216 -1.6196 7.0170 28 6 4.2343 -1.1020 6.7391 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.6263 -0.6888 -3.4657 35 1 5.1507 -1.1481 -2.6701 36 1 3.7721 -2.2743 -2.6699 37 1 3.6646 -2.0586 0.2387 38 1 5.3353 -1.6302 2.3093 39 1 6.0813 -2.7883 1.1820 40 1 10.9766 -0.8116 3.7992 41 1 2.2488 -1.6318 1.1527 42 1 3.8506 -2.9632 5.5317 43 1 2.0083 -0.8941 7.0021 44 1 2.7154 -2.4309 7.7372 45 1 5.0576 -1.5728 7.2765 46 1 4.3505 -0.0364 6.5412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739215663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:56 Heat of formation + Delta-G solvation = -1.591685 kcal Electronic energy + Delta-G solvation = -27150.021936 eV Core-core repulsion = 23361.221912 eV Total energy + Delta-G solvation = -3788.800024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27020 -39.14321 -37.65481 -36.93569 -34.51489 -33.03256 -32.42692 -31.97549 -30.60945 -28.52136 -27.07121 -25.47923 -25.11087 -22.63665 -22.50730 -21.72166 -21.28158 -20.16197 -18.79300 -17.83353 -16.92377 -16.66476 -16.25633 -16.02386 -15.29631 -15.05793 -14.81726 -14.80160 -14.60822 -14.09559 -13.92195 -13.67871 -13.18983 -12.94949 -12.71606 -12.68295 -12.63270 -12.36531 -12.35170 -12.04591 -11.93688 -11.65637 -11.56507 -11.36524 -11.09877 -11.05445 -11.04034 -10.96779 -10.77641 -10.47429 -10.06917 -9.82880 -9.77480 -9.40726 -9.35177 -9.06124 -8.79458 -8.22460 -6.48444 -6.21056 -3.90982 1.50361 2.24629 2.90622 3.05691 3.12402 3.20846 3.26088 3.28934 3.30629 3.70167 3.96950 4.08922 4.19914 4.29753 4.58726 4.67469 4.83445 4.84354 4.86331 5.07449 5.13796 5.14855 5.20756 5.29440 5.37608 5.37968 5.42870 5.47480 5.50771 5.61393 5.67484 5.74812 5.80980 5.87727 5.89953 5.94856 6.00523 6.02502 6.11859 6.19107 6.27317 6.65917 7.22066 7.25925 7.58639 7.67381 8.03616 8.34927 8.63202 9.23807 10.86438 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.004310 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.652003 B = 6494.256694 C = 9152.259924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.095 0.905 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.090 0.910 7 C -0.163 4.163 8 N -0.731 5.731 9 C 0.533 3.467 10 O -0.514 6.514 11 C -0.153 4.153 12 S -0.057 6.057 13 C -0.533 4.533 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.916 3.084 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.274 1.274 21 N -0.710 5.710 22 C 0.643 3.357 23 O -0.523 6.523 24 C -0.234 4.234 25 C -0.033 4.033 26 C -0.069 4.069 27 C -0.162 4.162 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.389 0.611 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.269 0.731 41 H 0.397 0.603 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.660 -5.239 -3.284 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.113 0.887 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.387 5.387 9 C 0.319 3.681 10 O -0.388 6.388 11 C -0.304 4.304 12 S 0.170 5.830 13 C -0.681 4.681 14 H 0.089 0.911 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.742 3.258 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 N -0.363 5.363 22 C 0.430 3.570 23 O -0.400 6.400 24 C -0.237 4.237 25 C -0.036 4.036 26 C -0.087 4.087 27 C -0.199 4.199 28 C -0.189 4.189 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.233 0.767 42 H 0.155 0.845 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.675 -2.747 -4.147 20.294 hybrid contribution -0.416 -2.670 1.665 3.174 sum -20.091 -5.416 -2.482 20.956 Atomic orbital electron populations 1.22188 0.94895 1.02213 1.02873 1.21050 0.93936 0.98056 0.83092 0.88741 1.22263 0.95173 1.01773 0.98080 1.20920 0.91209 0.98140 0.86062 0.89162 1.22178 1.02784 1.00688 0.96476 1.46186 1.19193 1.38254 1.35098 1.20269 0.80435 0.83445 0.83912 1.90699 1.60337 1.29511 1.58232 1.23526 1.05673 1.03105 0.98070 1.85430 1.08687 1.46941 1.41966 1.22788 1.05863 1.21063 1.18424 0.91122 1.24963 0.95352 0.95655 0.97485 1.70006 1.09389 1.30575 1.40295 0.86271 0.77841 0.80236 0.81430 1.19998 1.20832 1.19910 1.45953 1.67422 1.13756 1.09164 1.14559 0.76853 0.85076 0.80509 1.90845 1.49667 1.14766 1.84679 1.20464 1.05536 1.00854 0.96818 1.21387 0.92493 0.95760 0.93917 1.18960 1.05990 0.99656 0.84055 1.23099 0.96849 1.03890 0.96069 1.23120 0.95427 1.00822 0.99489 0.91338 0.92385 0.91861 0.88480 0.90648 0.91867 0.91588 0.92630 0.77668 0.89675 0.89469 0.92157 0.76669 0.84531 0.88312 0.87517 0.87078 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.15 0.35 -0.90 16 2 C 0.14 1.32 2.57 -67.93 -0.17 1.15 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.13 -0.95 4.43 -26.73 -0.12 -1.06 16 5 C 0.14 1.53 2.57 -67.93 -0.17 1.35 16 6 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 7 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 8 N -0.73 -9.23 3.80 -53.81 -0.20 -9.44 16 9 C 0.53 9.89 7.81 -10.98 -0.09 9.80 16 10 O -0.51 -11.71 15.52 5.56 0.09 -11.62 16 11 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 12 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 13 C -0.53 -14.96 9.50 30.94 0.29 -14.66 16 14 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 17 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 N -0.71 -7.61 3.79 -56.25 -0.21 -7.82 16 22 C 0.64 9.64 7.61 -14.33 -0.11 9.53 16 23 O -0.52 -9.62 16.75 5.27 0.09 -9.53 16 24 C -0.23 -3.53 13.61 -38.84 -0.53 -4.06 16 25 C -0.03 -0.47 13.47 -37.13 -0.50 -0.97 16 26 C -0.07 -0.81 6.22 -93.41 -0.58 -1.39 16 27 C -0.16 -1.52 10.21 -26.73 -0.27 -1.79 16 28 C -0.15 -1.76 10.21 -26.73 -0.27 -2.04 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 3.76 6.51 -40.82 -0.27 3.50 16 38 H 0.08 1.65 8.14 -51.91 -0.42 1.22 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.40 3.35 6.47 -40.82 -0.26 3.09 16 42 H 0.14 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -36.93 409.75 -9.47 -46.40 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.20 Total: 6.14 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.69 Total: -7.19 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.32 Total: -42.58 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.17 Total: -21.15 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.93 -9.47 -46.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739215663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.806 kcal (2) G-P(sol) polarization free energy of solvation -36.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds