Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.48035 * 2 1 4 4 C 1.53009 * 109.47231 * 239.99783 * 2 1 3 5 5 C 1.52999 * 109.47020 * 175.00609 * 4 2 1 6 6 H 1.09000 * 109.47160 * 304.99726 * 5 4 2 7 7 C 1.53006 * 109.46626 * 185.00095 * 5 4 2 8 8 N 1.46492 * 109.47381 * 64.99945 * 5 4 2 9 9 C 1.34781 * 119.99920 * 204.99632 * 8 5 4 10 10 O 1.21274 * 119.99803 * 0.02562 * 9 8 5 11 11 C 1.50697 * 119.99747 * 180.02562 * 9 8 5 12 12 S 1.81008 * 109.47095 * 180.02562 * 11 9 8 13 13 C 1.76197 * 100.00235 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99917 * 359.97438 * 13 12 11 15 15 C 1.38798 * 120.00124 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99669 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99921 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47584 * 59.99721 * 17 15 13 19 19 H 1.48508 * 109.46887 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47236 * 299.99656 * 17 15 13 21 21 N 1.46503 * 109.47198 * 120.00087 * 2 1 3 22 22 C 1.34776 * 120.00063 * 275.00275 * 21 2 1 23 23 O 1.21610 * 119.99795 * 359.97438 * 22 21 2 24 24 C 1.43203 * 120.00103 * 179.97438 * 22 21 2 25 25 C 4.88639 * 107.70059 * 105.53573 * 2 1 3 26 26 C 6.32548 * 108.20529 * 108.84326 * 2 1 3 27 27 C 1.53005 * 117.50067 * 285.97757 * 26 25 24 28 28 C 1.53001 * 60.00016 * 252.51177 * 27 26 25 29 29 H 1.09004 * 109.47038 * 59.99597 * 1 2 3 30 30 H 1.08997 * 109.47799 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47446 * 300.00613 * 1 2 3 32 32 H 1.08993 * 109.46833 * 55.00057 * 4 2 1 33 33 H 1.09005 * 109.46493 * 295.00330 * 4 2 1 34 34 H 1.09001 * 109.46801 * 59.99811 * 7 5 4 35 35 H 1.09001 * 109.46998 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47050 * 299.99699 * 7 5 4 37 37 H 0.96998 * 120.00176 * 25.00271 * 8 5 4 38 38 H 1.09006 * 109.47530 * 299.99941 * 11 9 8 39 39 H 1.08998 * 109.47252 * 60.00349 * 11 9 8 40 40 H 0.97000 * 119.99547 * 180.02562 * 16 15 13 41 41 H 0.97001 * 120.00103 * 94.99033 * 21 2 1 42 42 H 1.08997 * 115.55385 * 71.69092 * 26 25 24 43 43 H 1.08998 * 117.49802 * 359.97438 * 27 26 25 44 44 H 1.09004 * 117.49931 * 145.02534 * 27 26 25 45 45 H 1.09004 * 117.49924 * 252.50498 * 28 27 26 46 46 H 1.09007 * 117.51724 * 107.48146 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0644 -1.2253 -2.6240 8 7 4.1535 -1.3343 -0.1823 9 6 5.3747 -0.9913 0.2734 10 8 5.9858 -0.0855 -0.2528 11 6 5.9805 -1.7333 1.4367 12 16 7.6120 -1.0432 1.8088 13 6 8.0751 -2.0671 3.1659 14 1 7.4042 -2.8385 3.5139 15 6 9.3018 -1.8815 3.7883 16 7 10.1192 -0.9410 3.3644 17 14 9.7930 -2.9675 5.2266 18 1 9.8242 -4.3859 4.7880 19 1 11.1396 -2.5696 5.7100 20 1 8.8060 -2.8107 6.3250 21 7 2.0183 -0.6906 1.1962 22 6 2.1469 -0.0183 2.3572 23 8 1.8581 1.1617 2.4117 24 6 2.6238 -0.6935 3.5265 25 6 3.0156 -1.2468 4.4850 26 6 3.5061 -1.9407 5.6868 27 6 2.8216 -1.6196 7.0170 28 6 4.2343 -1.1020 6.7391 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.6263 -0.6888 -3.4657 35 1 5.1507 -1.1481 -2.6701 36 1 3.7721 -2.2743 -2.6699 37 1 3.6646 -2.0586 0.2387 38 1 5.3353 -1.6302 2.3093 39 1 6.0813 -2.7883 1.1820 40 1 10.9766 -0.8116 3.7992 41 1 2.2488 -1.6318 1.1527 42 1 3.8506 -2.9632 5.5317 43 1 2.0083 -0.8941 7.0021 44 1 2.7154 -2.4309 7.7372 45 1 5.0576 -1.5728 7.2765 46 1 4.3505 -0.0364 6.5412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739215663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = -26.205447 kcal Electronic energy + Delta-G solvation = -27151.089269 eV Core-core repulsion = 23361.221912 eV Total energy + Delta-G solvation = -3789.867357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.38485 -40.49208 -38.54940 -38.05858 -35.63673 -34.56776 -34.13980 -33.12683 -31.65995 -29.94704 -27.77922 -27.63577 -26.11080 -23.56418 -23.33266 -22.84106 -22.22014 -21.38985 -19.84140 -19.80255 -18.05837 -17.74349 -17.49693 -17.19994 -16.86390 -16.51956 -16.16610 -15.99281 -15.94163 -15.56188 -15.00550 -14.67586 -14.52890 -14.51461 -13.75829 -13.65410 -13.57418 -13.33913 -13.25180 -13.15463 -13.01974 -12.91825 -12.84675 -12.61331 -12.48452 -12.46586 -12.34311 -11.89393 -11.83559 -11.72687 -11.58583 -11.11150 -11.08682 -10.93036 -10.79479 -10.42852 -10.27425 -9.93446 -8.66315 -8.32460 -6.10988 0.37460 1.15770 1.26750 1.44606 1.47536 1.56250 1.61430 1.91433 2.25275 2.27169 2.29808 3.01607 3.02025 3.13719 3.33920 3.52232 3.79747 3.82781 3.94655 3.98083 3.99872 4.14048 4.23098 4.35518 4.39192 4.42596 4.47614 4.51900 4.71601 4.74133 4.76564 4.81535 4.92618 4.94012 5.01598 5.04690 5.15813 5.16336 5.30583 5.35286 5.39016 5.42485 5.56045 6.11105 6.21123 6.28485 6.46116 6.97733 7.08411 7.24621 8.76734 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.004310 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.652003 B = 6494.256694 C = 9152.259924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.062 0.938 4 C -0.117 4.117 5 C 0.136 3.864 6 H 0.056 0.944 7 C -0.156 4.156 8 N -0.705 5.705 9 C 0.533 3.467 10 O -0.564 6.564 11 C -0.127 4.127 12 S -0.153 6.153 13 C -0.540 4.540 14 H 0.084 0.916 15 C 0.014 3.986 16 N -0.914 5.914 17 Si 0.995 3.005 18 H -0.261 1.261 19 H -0.283 1.283 20 H -0.255 1.255 21 N -0.692 5.692 22 C 0.636 3.364 23 O -0.570 6.570 24 C -0.269 4.269 25 C -0.027 4.027 26 C -0.088 4.088 27 C -0.131 4.131 28 C -0.171 4.171 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.407 0.593 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.410 0.590 42 H 0.156 0.844 43 H 0.098 0.902 44 H 0.139 0.861 45 H 0.120 0.880 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.206 -8.663 -3.059 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 H 0.080 0.920 4 C -0.155 4.155 5 C 0.032 3.968 6 H 0.075 0.925 7 C -0.215 4.215 8 N -0.360 5.360 9 C 0.318 3.682 10 O -0.442 6.442 11 C -0.278 4.278 12 S 0.074 5.926 13 C -0.688 4.688 14 H 0.102 0.898 15 C -0.190 4.190 16 N -0.551 5.551 17 Si 0.816 3.184 18 H -0.185 1.185 19 H -0.208 1.208 20 H -0.179 1.179 21 N -0.344 5.344 22 C 0.424 3.576 23 O -0.451 6.451 24 C -0.272 4.272 25 C -0.029 4.029 26 C -0.105 4.105 27 C -0.168 4.168 28 C -0.208 4.208 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.245 0.755 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.249 0.751 42 H 0.174 0.826 43 H 0.116 0.884 44 H 0.157 0.843 45 H 0.138 0.862 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.289 -6.237 -3.962 23.482 hybrid contribution 0.284 -1.593 1.523 2.222 sum -22.005 -7.830 -2.439 23.483 Atomic orbital electron populations 1.22118 0.92970 1.03568 1.02659 1.21235 0.95395 0.96763 0.83300 0.91957 1.22246 0.91513 1.03890 0.97810 1.21139 0.93875 0.96139 0.85616 0.92540 1.22120 1.00352 1.02465 0.96517 1.45963 1.17054 1.38063 1.34969 1.20042 0.81892 0.82795 0.83438 1.90687 1.62129 1.31693 1.59729 1.23336 1.01255 1.03883 0.99340 1.85664 1.14510 1.49332 1.43059 1.23112 1.06427 1.21023 1.18225 0.89812 1.26123 0.95133 0.97081 1.00682 1.70193 1.09930 1.32790 1.42146 0.85054 0.77601 0.78228 0.77480 1.18542 1.20791 1.17918 1.45923 1.65861 1.14200 1.08426 1.14761 0.76615 0.84672 0.81558 1.90811 1.52102 1.16687 1.85492 1.20751 1.06915 1.01764 0.97734 1.22062 0.91556 0.95316 0.93991 1.19306 1.07174 1.00178 0.83875 1.23221 0.95023 1.04021 0.94529 1.23157 0.97531 0.99770 1.00314 0.89189 0.90139 0.94526 0.85308 0.87146 0.89374 0.95430 0.90250 0.75492 0.88674 0.87129 0.92129 0.75134 0.82631 0.88373 0.84334 0.86189 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.48 71.98 0.68 -1.33 16 2 C 0.14 2.32 2.57 44.99 0.12 2.43 16 3 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 4 C -0.12 -1.20 4.43 30.60 0.14 -1.07 16 5 C 0.14 2.73 2.57 44.99 0.12 2.84 16 6 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 7 C -0.16 -2.79 9.48 71.98 0.68 -2.10 16 8 N -0.70 -16.90 3.80 -442.55 -1.68 -18.58 16 9 C 0.53 20.03 7.81 87.66 0.68 20.72 16 10 O -0.56 -27.00 15.52 -3.01 -0.05 -27.04 16 11 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 12 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 13 C -0.54 -30.57 9.50 67.95 0.65 -29.93 16 14 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 15 C 0.01 0.81 5.49 84.86 0.47 1.28 16 16 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 17 Si 1.00 42.63 29.55 68.60 2.03 44.66 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 21 N -0.69 -14.12 3.79 -450.12 -1.71 -15.83 16 22 C 0.64 19.59 7.61 85.49 0.65 20.24 16 23 O -0.57 -22.20 16.75 -4.06 -0.07 -22.26 16 24 C -0.27 -8.24 13.61 30.02 0.41 -7.83 16 25 C -0.03 -0.75 13.47 31.12 0.42 -0.33 16 26 C -0.09 -1.92 6.22 -12.60 -0.08 -2.00 16 27 C -0.13 -2.15 10.21 30.60 0.31 -1.84 16 28 C -0.17 -3.83 10.21 30.60 0.31 -3.51 16 29 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.41 6.72 6.51 -92.71 -0.60 6.12 16 38 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.41 5.94 6.47 -92.71 -0.60 5.34 16 42 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -88.36 409.75 3.44 -84.92 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.20 Total: 27.23 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.99 Total: -7.13 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -3.10 Total: -90.59 kcal Atomic # 8 Polarization: -49.19 SS G_CDS: -0.11 Total: -49.31 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -88.36 3.44 -84.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739215663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.718 kcal (2) G-P(sol) polarization free energy of solvation -88.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds