Wall clock time and date at job start Tue Mar 31 2020 20:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47209 * 239.99819 * 2 1 3 5 5 C 1.52999 * 109.47080 * 175.00208 * 4 2 1 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 2 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 2 8 8 N 1.46498 * 109.46963 * 294.99494 * 5 4 2 9 9 C 1.34777 * 119.99828 * 154.72290 * 8 5 4 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 5 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 5 12 12 S 1.81000 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99715 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46661 * 60.00586 * 17 15 13 19 19 H 1.48501 * 109.47391 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47355 * 300.00441 * 17 15 13 21 21 N 1.46495 * 109.46926 * 119.99527 * 2 1 3 22 22 C 1.34775 * 120.00457 * 275.00188 * 21 2 1 23 23 O 1.21618 * 119.99637 * 359.97438 * 22 21 2 24 24 C 1.43206 * 120.00659 * 180.02562 * 22 21 2 25 25 C 4.88634 * 107.69927 * 105.53087 * 2 1 3 26 26 C 6.32557 * 108.20513 * 108.83896 * 2 1 3 27 27 C 1.52997 * 117.49585 * 199.94599 * 26 25 24 28 28 C 1.53003 * 117.49556 * 131.32177 * 26 25 24 29 29 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46920 * 300.00659 * 1 2 3 31 31 H 1.08997 * 109.46639 * 60.00527 * 1 2 3 32 32 H 1.08997 * 109.47302 * 54.99671 * 4 2 1 33 33 H 1.09007 * 109.46917 * 295.00206 * 4 2 1 34 34 H 1.09003 * 109.47189 * 300.00067 * 7 5 4 35 35 H 1.09009 * 109.47238 * 59.99946 * 7 5 4 36 36 H 1.08997 * 109.47293 * 179.97438 * 7 5 4 37 37 H 0.97001 * 120.00384 * 335.00737 * 8 5 4 38 38 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 39 39 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 40 40 H 0.96991 * 119.99795 * 179.97438 * 16 15 13 41 41 H 0.97009 * 120.00171 * 95.00238 * 21 2 1 42 42 H 1.09000 * 115.55014 * 345.65707 * 26 25 24 43 43 H 1.08996 * 117.50207 * 359.97438 * 27 26 25 44 44 H 1.08998 * 117.50128 * 145.02356 * 27 26 25 45 45 H 1.08993 * 117.49815 * 214.98083 * 28 26 25 46 46 H 1.09002 * 117.49387 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9480 0.7893 -1.4925 9 6 5.1591 1.2147 -1.0816 10 8 5.9337 0.4352 -0.5685 11 6 5.5509 2.6590 -1.2599 12 16 7.2225 2.9148 -0.6148 13 6 7.4172 4.6349 -0.9429 14 1 6.6178 5.1890 -1.4123 15 6 8.5975 5.2782 -0.5971 16 7 9.5717 4.6030 -0.0245 17 14 8.8042 7.1017 -0.9456 18 1 7.7548 7.8655 -0.2240 19 1 10.1446 7.5449 -0.4849 20 1 8.6777 7.3442 -2.4051 21 7 2.0183 -0.6905 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8582 1.1620 2.4116 24 6 2.6249 -0.6930 3.5264 25 6 3.0156 -1.2464 4.4851 26 6 3.5063 -1.9403 5.6870 27 6 4.5651 -1.2281 6.5311 28 6 4.9540 -2.4355 5.6753 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.6055 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.8002 -2.4821 -2.3592 35 1 3.6547 -1.0595 -3.4193 36 1 5.1715 -1.3612 -2.5384 37 1 3.3285 1.4128 -1.9028 38 1 5.5278 2.9135 -2.3195 39 1 4.8507 3.2949 -0.7182 40 1 10.3966 5.0524 0.2168 41 1 2.2491 -1.6317 1.1527 42 1 2.7703 -2.5496 6.2115 43 1 4.8987 -0.2460 6.1962 44 1 4.5258 -1.3686 7.6113 45 1 5.1704 -3.3702 6.1925 46 1 5.5430 -2.2469 4.7778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739215666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:05 Heat of formation + Delta-G solvation = -10.196774 kcal Electronic energy + Delta-G solvation = -26128.001447 eV Core-core repulsion = 22338.828278 eV Total energy + Delta-G solvation = -3789.173169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18313 -39.22351 -37.86697 -36.93737 -34.69536 -33.07807 -32.38862 -31.73486 -30.81983 -28.50921 -27.07519 -25.44212 -25.26287 -22.76199 -22.73456 -21.75729 -21.00011 -20.23186 -19.04741 -17.79441 -16.93436 -16.73178 -16.30252 -16.00998 -15.34851 -15.21997 -14.84824 -14.76643 -14.45554 -14.31171 -13.97834 -13.65641 -13.16413 -12.95309 -12.88791 -12.73913 -12.59515 -12.45852 -12.33388 -12.25281 -11.92641 -11.85263 -11.61273 -11.45705 -11.16884 -11.00568 -11.00191 -10.94941 -10.72864 -10.50604 -10.32943 -9.93853 -9.78400 -9.34724 -9.33311 -9.02408 -8.86973 -8.19838 -6.45186 -6.17675 -3.87653 1.41885 1.96480 2.82199 3.07870 3.15053 3.26778 3.30341 3.34658 3.37687 3.64686 3.75724 3.92653 4.24538 4.28754 4.43777 4.53792 4.60289 4.70399 4.82967 5.07694 5.14571 5.17155 5.17592 5.23288 5.26029 5.31025 5.34834 5.43649 5.48629 5.50730 5.60685 5.69523 5.70301 5.77999 5.79687 5.93154 5.94514 6.01207 6.17622 6.20186 6.21654 6.70176 7.04665 7.21940 7.63328 7.74944 7.97189 8.39146 8.66641 9.27586 10.89780 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007897 B = 0.003032 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.824335 B = 9231.458678 C =11253.624502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.096 0.904 4 C -0.135 4.135 5 C 0.141 3.859 6 H 0.088 0.912 7 C -0.163 4.163 8 N -0.734 5.734 9 C 0.535 3.465 10 O -0.518 6.518 11 C -0.154 4.154 12 S -0.060 6.060 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 N -0.712 5.712 22 C 0.638 3.362 23 O -0.516 6.516 24 C -0.219 4.219 25 C -0.050 4.050 26 C -0.069 4.069 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.402 0.598 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.783 -17.339 3.217 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.114 0.886 4 C -0.174 4.174 5 C 0.036 3.964 6 H 0.106 0.894 7 C -0.222 4.222 8 N -0.388 5.388 9 C 0.321 3.679 10 O -0.392 6.392 11 C -0.305 4.305 12 S 0.167 5.833 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.504 5.504 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.200 1.200 21 N -0.364 5.364 22 C 0.424 3.576 23 O -0.393 6.393 24 C -0.222 4.222 25 C -0.052 4.052 26 C -0.086 4.086 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.237 0.763 42 H 0.153 0.847 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.511 -17.771 4.158 25.293 hybrid contribution -1.002 1.918 -1.057 2.409 sum -18.513 -15.853 3.100 24.569 Atomic orbital electron populations 1.22195 0.94849 1.02218 1.02946 1.21072 0.93985 0.98255 0.83081 0.88557 1.22255 0.95290 1.02082 0.97740 1.20881 0.93275 0.82453 0.99797 0.89429 1.22185 1.02717 0.99307 0.97980 1.46078 1.17719 1.10321 1.64717 1.20281 0.80835 0.89989 0.76807 1.90685 1.50313 1.56315 1.41893 1.23538 1.07007 0.94679 1.05259 1.85345 1.07169 1.11700 1.79111 1.22835 1.04342 0.94428 1.46723 0.91003 1.24984 0.94833 0.99140 0.94591 1.70009 1.05303 1.36425 1.38642 0.86233 0.77516 0.83034 0.78775 1.19909 1.20818 1.19960 1.45850 1.67374 1.14048 1.09112 1.14609 0.77201 0.85161 0.80595 1.90880 1.49170 1.14647 1.84570 1.20579 1.03905 1.00805 0.96921 1.21365 0.93855 0.96125 0.93883 1.18924 0.93290 1.03295 0.93131 1.23143 1.00153 0.98130 0.98276 1.23139 0.94279 0.99077 1.03074 0.92364 0.91851 0.91278 0.89355 0.89725 0.91998 0.92494 0.91589 0.76950 0.89297 0.89260 0.92180 0.76310 0.84702 0.87762 0.87369 0.87360 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.14 1.29 2.52 -67.93 -0.17 1.12 16 3 H 0.10 1.15 7.05 -51.93 -0.37 0.79 16 4 C -0.14 -0.95 4.29 -26.73 -0.11 -1.06 16 5 C 0.14 1.52 2.52 -67.93 -0.17 1.35 16 6 H 0.09 1.15 7.05 -51.93 -0.37 0.78 16 7 C -0.16 -1.64 9.49 37.16 0.35 -1.29 16 8 N -0.73 -9.68 4.45 -53.81 -0.24 -9.92 16 9 C 0.53 10.17 7.82 -10.98 -0.09 10.08 16 10 O -0.52 -11.84 15.52 5.55 0.09 -11.75 16 11 C -0.15 -3.24 6.16 36.01 0.22 -3.01 16 12 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 13 C -0.54 -15.64 9.50 30.94 0.29 -15.35 16 14 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 15 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 16 N -0.87 -26.66 13.22 55.49 0.73 -25.92 16 17 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 N -0.71 -7.40 4.44 -56.24 -0.25 -7.65 16 22 C 0.64 9.18 7.62 -14.33 -0.11 9.07 16 23 O -0.52 -9.39 16.75 5.26 0.09 -9.30 16 24 C -0.22 -2.99 13.61 -38.83 -0.53 -3.52 16 25 C -0.05 -0.59 13.47 -37.12 -0.50 -1.09 16 26 C -0.07 -0.57 6.22 -93.40 -0.58 -1.15 16 27 C -0.16 -1.26 10.21 -26.73 -0.27 -1.54 16 28 C -0.16 -1.19 10.21 -26.73 -0.27 -1.46 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.40 4.15 8.60 -40.82 -0.35 3.80 16 38 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 39 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.40 3.18 8.57 -40.82 -0.35 2.83 16 42 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 413.95 15.07 6.24 6.24 Total: -1.00 -38.28 413.95 -9.58 -47.86 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.32 Total: 4.18 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.68 Total: -6.71 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.24 Total: -43.50 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.17 Total: -21.05 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -38.28 -9.58 -47.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739215666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.667 kcal (2) G-P(sol) polarization free energy of solvation -38.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds