Wall clock time and date at job start Tue Mar 31 2020 20:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.52997 * 109.47209 * 239.99819 * 2 1 3 5 5 C 1.52999 * 109.47080 * 175.00208 * 4 2 1 6 6 H 1.09004 * 109.47434 * 54.99895 * 5 4 2 7 7 C 1.52997 * 109.47114 * 174.99701 * 5 4 2 8 8 N 1.46498 * 109.46963 * 294.99494 * 5 4 2 9 9 C 1.34777 * 119.99828 * 154.72290 * 8 5 4 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 5 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 5 12 12 S 1.81000 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.76198 * 99.99715 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00516 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99710 * 179.97438 * 13 12 11 16 16 N 1.31634 * 120.00163 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00011 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46661 * 60.00586 * 17 15 13 19 19 H 1.48501 * 109.47391 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47355 * 300.00441 * 17 15 13 21 21 N 1.46495 * 109.46926 * 119.99527 * 2 1 3 22 22 C 1.34775 * 120.00457 * 275.00188 * 21 2 1 23 23 O 1.21618 * 119.99637 * 359.97438 * 22 21 2 24 24 C 1.43206 * 120.00659 * 180.02562 * 22 21 2 25 25 C 4.88634 * 107.69927 * 105.53087 * 2 1 3 26 26 C 6.32557 * 108.20513 * 108.83896 * 2 1 3 27 27 C 1.52997 * 117.49585 * 199.94599 * 26 25 24 28 28 C 1.53003 * 117.49556 * 131.32177 * 26 25 24 29 29 H 1.09002 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46920 * 300.00659 * 1 2 3 31 31 H 1.08997 * 109.46639 * 60.00527 * 1 2 3 32 32 H 1.08997 * 109.47302 * 54.99671 * 4 2 1 33 33 H 1.09007 * 109.46917 * 295.00206 * 4 2 1 34 34 H 1.09003 * 109.47189 * 300.00067 * 7 5 4 35 35 H 1.09009 * 109.47238 * 59.99946 * 7 5 4 36 36 H 1.08997 * 109.47293 * 179.97438 * 7 5 4 37 37 H 0.97001 * 120.00384 * 335.00737 * 8 5 4 38 38 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 39 39 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 40 40 H 0.96991 * 119.99795 * 179.97438 * 16 15 13 41 41 H 0.97009 * 120.00171 * 95.00238 * 21 2 1 42 42 H 1.09000 * 115.55014 * 345.65707 * 26 25 24 43 43 H 1.08996 * 117.50207 * 359.97438 * 27 26 25 44 44 H 1.08998 * 117.50128 * 145.02356 * 27 26 25 45 45 H 1.08993 * 117.49815 * 214.98083 * 28 26 25 46 46 H 1.09002 * 117.49387 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9923 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9480 0.7893 -1.4925 9 6 5.1591 1.2147 -1.0816 10 8 5.9337 0.4352 -0.5685 11 6 5.5509 2.6590 -1.2599 12 16 7.2225 2.9148 -0.6148 13 6 7.4172 4.6349 -0.9429 14 1 6.6178 5.1890 -1.4123 15 6 8.5975 5.2782 -0.5971 16 7 9.5717 4.6030 -0.0245 17 14 8.8042 7.1017 -0.9456 18 1 7.7548 7.8655 -0.2240 19 1 10.1446 7.5449 -0.4849 20 1 8.6777 7.3442 -2.4051 21 7 2.0183 -0.6905 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8582 1.1620 2.4116 24 6 2.6249 -0.6930 3.5264 25 6 3.0156 -1.2464 4.4851 26 6 3.5063 -1.9403 5.6870 27 6 4.5651 -1.2281 6.5311 28 6 4.9540 -2.4355 5.6753 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.6055 -0.2619 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.8002 -2.4821 -2.3592 35 1 3.6547 -1.0595 -3.4193 36 1 5.1715 -1.3612 -2.5384 37 1 3.3285 1.4128 -1.9028 38 1 5.5278 2.9135 -2.3195 39 1 4.8507 3.2949 -0.7182 40 1 10.3966 5.0524 0.2168 41 1 2.2491 -1.6317 1.1527 42 1 2.7703 -2.5496 6.2115 43 1 4.8987 -0.2460 6.1962 44 1 4.5258 -1.3686 7.6113 45 1 5.1704 -3.3702 6.1925 46 1 5.5430 -2.2469 4.7778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739215666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:04 Heat of formation + Delta-G solvation = -37.045994 kcal Electronic energy + Delta-G solvation = -26129.165717 eV Core-core repulsion = 22338.828278 eV Total energy + Delta-G solvation = -3790.337438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25178 -40.57525 -38.55738 -38.02103 -35.82605 -34.61134 -34.05844 -32.92594 -31.76178 -30.00062 -27.77468 -27.67826 -26.13878 -23.58584 -23.34892 -22.78788 -21.98586 -21.43421 -20.07397 -19.76874 -17.98065 -17.69134 -17.60914 -17.17414 -16.90408 -16.43036 -16.25119 -16.02592 -15.89816 -15.40304 -15.14956 -14.82340 -14.54986 -14.47748 -13.78557 -13.65990 -13.57734 -13.42252 -13.20515 -13.18256 -13.05057 -12.95969 -12.88915 -12.64384 -12.49343 -12.48266 -12.31823 -11.97894 -11.78022 -11.73505 -11.59138 -11.15463 -11.14849 -10.92582 -10.76760 -10.32474 -10.26029 -10.10120 -8.69619 -8.37024 -6.15494 0.38496 1.02859 1.24510 1.41697 1.44095 1.54701 1.61417 1.92025 2.24651 2.31179 2.36175 2.92999 2.96723 3.12294 3.29662 3.53038 3.78129 3.80143 3.95189 3.98932 3.99326 4.12307 4.24549 4.33531 4.42184 4.43635 4.45603 4.48940 4.71071 4.72713 4.75324 4.82158 4.91090 4.92428 5.04751 5.06427 5.13483 5.16603 5.29022 5.34468 5.36919 5.38433 5.58273 6.07676 6.16890 6.30269 6.51029 6.98022 7.03722 7.25898 8.72192 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007897 B = 0.003032 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.824335 B = 9231.458678 C =11253.624502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.118 4.118 5 C 0.135 3.865 6 H 0.061 0.939 7 C -0.157 4.157 8 N -0.709 5.709 9 C 0.534 3.466 10 O -0.564 6.564 11 C -0.132 4.132 12 S -0.150 6.150 13 C -0.550 4.550 14 H 0.081 0.919 15 C 0.014 3.986 16 N -0.911 5.911 17 Si 0.999 3.001 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.260 1.260 21 N -0.694 5.694 22 C 0.631 3.369 23 O -0.569 6.569 24 C -0.271 4.271 25 C -0.031 4.031 26 C -0.078 4.078 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.414 0.586 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.272 0.728 41 H 0.415 0.585 42 H 0.170 0.830 43 H 0.078 0.922 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.061 -18.368 2.150 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 H 0.084 0.916 4 C -0.156 4.156 5 C 0.031 3.969 6 H 0.079 0.921 7 C -0.215 4.215 8 N -0.363 5.363 9 C 0.320 3.680 10 O -0.443 6.443 11 C -0.283 4.283 12 S 0.078 5.922 13 C -0.697 4.697 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.547 5.547 17 Si 0.820 3.180 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.184 1.184 21 N -0.346 5.346 22 C 0.418 3.582 23 O -0.450 6.450 24 C -0.273 4.273 25 C -0.034 4.034 26 C -0.096 4.096 27 C -0.200 4.200 28 C -0.188 4.188 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.251 0.749 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.187 0.813 43 H 0.097 0.903 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.848 -18.851 3.033 27.541 hybrid contribution -0.362 2.109 -0.717 2.257 sum -20.210 -16.742 2.316 26.345 Atomic orbital electron populations 1.22128 0.93081 1.03516 1.02663 1.21250 0.95345 0.97023 0.83412 0.91590 1.22241 0.91735 1.04248 0.97394 1.21140 0.96046 0.80476 0.99226 0.92108 1.22130 1.00206 1.00990 0.98213 1.45887 1.15675 1.12078 1.62625 1.19984 0.82278 0.88788 0.76994 1.90670 1.52202 1.57011 1.44397 1.23390 1.02169 0.96731 1.06027 1.85497 1.13440 1.12710 1.80601 1.23174 1.05049 0.94487 1.47030 0.90125 1.26143 0.94217 1.04793 0.93939 1.70176 1.05978 1.38808 1.39734 0.85003 0.77807 0.75891 0.79287 1.18896 1.20095 1.18438 1.45842 1.65749 1.14556 1.08418 1.14877 0.76804 0.84747 0.81771 1.90832 1.51934 1.16717 1.85527 1.20818 1.05895 1.02536 0.98090 1.22256 0.92184 0.95085 0.93864 1.19349 0.94455 1.03741 0.92016 1.23237 0.99719 0.97150 0.99910 1.23229 0.92996 1.00236 1.02371 0.90207 0.94604 0.89127 0.86285 0.86261 0.89146 0.90483 0.95436 0.74948 0.87107 0.88329 0.91928 0.74757 0.81292 0.90301 0.84432 0.84184 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.39 16 2 C 0.13 2.29 2.52 44.99 0.11 2.40 16 3 H 0.07 1.58 7.05 -2.39 -0.02 1.56 16 4 C -0.12 -1.24 4.29 30.59 0.13 -1.10 16 5 C 0.14 2.70 2.52 44.99 0.11 2.81 16 6 H 0.06 1.59 7.05 -2.39 -0.02 1.57 16 7 C -0.16 -2.80 9.49 71.98 0.68 -2.12 16 8 N -0.71 -18.09 4.45 -442.53 -1.97 -20.06 16 9 C 0.53 20.76 7.82 87.66 0.69 21.45 16 10 O -0.56 -27.09 15.52 -3.04 -0.05 -27.14 16 11 C -0.13 -5.63 6.16 71.24 0.44 -5.19 16 12 S -0.15 -8.71 20.57 -56.49 -1.16 -9.87 16 13 C -0.55 -32.75 9.50 67.96 0.65 -32.10 16 14 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 15 C 0.01 0.82 5.49 84.86 0.47 1.28 16 16 N -0.91 -57.46 13.22 21.65 0.29 -57.17 16 17 Si 1.00 45.04 29.55 68.60 2.03 47.06 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 N -0.69 -14.49 4.44 -450.11 -2.00 -16.49 16 22 C 0.63 19.34 7.62 85.49 0.65 19.99 16 23 O -0.57 -22.30 16.75 -4.09 -0.07 -22.36 16 24 C -0.27 -7.84 13.61 30.02 0.41 -7.44 16 25 C -0.03 -0.77 13.47 31.13 0.42 -0.35 16 26 C -0.08 -1.21 6.22 -12.60 -0.08 -1.29 16 27 C -0.16 -2.45 10.21 30.60 0.31 -2.14 16 28 C -0.15 -2.10 10.21 30.60 0.31 -1.79 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.12 0.57 8.14 -2.38 -0.02 0.56 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.41 7.81 8.60 -92.71 -0.80 7.01 16 38 H 0.11 4.20 8.14 -2.40 -0.02 4.18 16 39 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 40 H 0.27 15.89 8.31 -92.72 -0.77 15.12 16 41 H 0.42 6.27 8.57 -92.70 -0.79 5.48 16 42 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -91.45 413.95 2.46 -88.98 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.59 Total: 24.01 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.98 Total: -6.96 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -3.68 Total: -93.72 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -0.12 Total: -49.50 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -91.45 2.46 -88.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739215666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.935 kcal (2) G-P(sol) polarization free energy of solvation -91.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds