Wall clock time and date at job start Tue Mar 31 2020 20:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47334 * 240.00135 * 2 1 3 5 5 C 1.36938 * 119.99919 * 74.70777 * 4 2 1 6 6 H 1.07999 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99916 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00090 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99867 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47170 * 59.99820 * 9 7 5 11 11 H 1.48501 * 109.46823 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47327 * 299.99475 * 9 7 5 13 13 C 1.53001 * 109.47399 * 119.99906 * 2 1 3 14 14 H 1.08998 * 109.70050 * 73.59248 * 13 2 1 15 15 C 1.53193 * 109.58504 * 313.24153 * 13 2 1 16 16 C 1.53041 * 109.31174 * 185.57755 * 15 13 2 17 17 C 1.53040 * 109.53862 * 61.36120 * 16 15 13 18 18 C 1.53186 * 109.31378 * 298.63476 * 17 16 15 19 19 N 1.46920 * 109.58772 * 193.95071 * 13 2 1 20 20 C 1.34773 * 120.63163 * 353.41303 * 19 13 2 21 21 O 1.21285 * 120.00174 * 354.41676 * 20 19 13 22 22 C 1.50699 * 120.00333 * 174.41107 * 20 19 13 23 23 O 1.42900 * 109.47486 * 180.02562 * 22 20 19 24 24 C 1.36229 * 116.99908 * 179.97438 * 23 22 20 25 25 C 1.38669 * 122.58849 * 179.97438 * 24 23 22 26 26 C 1.33431 * 114.89037 * 179.97438 * 25 24 23 27 27 S 1.75865 * 109.65476 * 0.02562 * 26 25 24 28 28 C 1.33627 * 122.58791 * 359.71013 * 24 23 22 29 29 H 1.09000 * 109.47225 * 300.00020 * 1 2 3 30 30 H 1.08998 * 109.47333 * 59.99958 * 1 2 3 31 31 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 32 32 H 0.96994 * 119.99962 * 254.71590 * 4 2 1 33 33 H 0.97001 * 119.99927 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.50165 * 65.62372 * 15 13 2 35 35 H 1.09004 * 109.49787 * 305.52316 * 15 13 2 36 36 H 1.08998 * 109.45610 * 301.33984 * 16 15 13 37 37 H 1.08998 * 109.45888 * 181.38501 * 16 15 13 38 38 H 1.08998 * 109.49688 * 58.58615 * 17 16 15 39 39 H 1.08997 * 109.49715 * 178.65462 * 17 16 15 40 40 H 1.09005 * 109.59031 * 174.42408 * 18 17 16 41 41 H 1.08996 * 109.58890 * 294.84789 * 18 17 16 42 42 H 1.09004 * 109.47375 * 300.00590 * 22 20 19 43 43 H 1.08997 * 109.47014 * 60.00108 * 22 20 19 44 44 H 1.08003 * 122.55274 * 0.02562 * 25 24 23 45 45 H 1.07994 * 125.17267 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.19824 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.9517 -0.0747 -2.4174 6 1 1.5395 0.9202 -2.4988 7 6 2.4140 -0.7293 -3.5509 8 7 2.9168 -1.9416 -3.4518 9 14 2.3237 0.1111 -5.2168 10 1 3.1141 1.3678 -5.1808 11 1 2.8778 -0.7920 -6.2573 12 1 0.9082 0.4256 -5.5365 13 6 2.0401 -0.7212 1.2492 14 1 1.8893 -1.7953 1.1408 15 6 1.2790 -0.2175 2.4797 16 6 1.8867 -0.8382 3.7397 17 6 3.3500 -0.4084 3.8673 18 6 4.1344 -0.9143 2.6527 19 7 3.4708 -0.4405 1.4304 20 6 4.1612 0.2390 0.4934 21 8 3.6292 0.5368 -0.5550 22 6 5.5944 0.6289 0.7484 23 8 6.1045 1.3358 -0.3839 24 6 7.3963 1.7630 -0.3158 25 6 8.0083 2.4587 -1.3475 26 6 9.2767 2.8032 -1.1176 27 16 9.7639 2.2377 0.4748 28 6 8.1699 1.5484 0.7524 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.3888 -1.5840 -1.1231 33 1 3.2402 -2.3988 -4.2438 34 1 0.2306 -0.5050 2.4019 35 1 1.3559 0.8683 2.5357 36 1 1.8319 -1.9247 3.6720 37 1 1.3314 -0.5006 4.6148 38 1 3.4073 0.6792 3.9102 39 1 3.7753 -0.8313 4.7774 40 1 5.1530 -0.5279 2.6886 41 1 4.1545 -2.0040 2.6586 42 1 5.6456 1.2691 1.6292 43 1 6.1906 -0.2680 0.9161 44 1 7.4969 2.7037 -2.2667 45 1 9.9080 3.3466 -1.8049 46 1 7.8635 1.0298 1.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752156395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:15 Heat of formation + Delta-G solvation = 24.058359 kcal Electronic energy + Delta-G solvation = -28558.751871 eV Core-core repulsion = 24771.064116 eV Total energy + Delta-G solvation = -3787.687755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.37612 -39.45958 -36.98641 -35.82648 -35.09581 -32.68097 -32.18276 -29.87148 -29.10613 -28.58922 -27.71100 -24.89161 -24.25327 -23.44925 -22.61217 -20.75301 -20.05005 -19.56230 -18.99790 -18.13463 -16.87931 -16.73429 -16.26587 -16.05812 -15.43919 -14.81744 -14.50539 -14.33031 -14.13007 -14.00284 -13.68670 -13.52752 -13.20509 -13.12856 -12.91634 -12.70729 -12.50837 -12.22451 -12.13619 -11.92151 -11.66737 -11.38799 -11.12258 -10.98705 -10.94403 -10.87074 -10.79409 -10.59682 -10.56264 -10.39362 -10.10628 -9.67235 -9.36582 -8.88302 -8.60486 -8.32471 -8.01647 -7.98531 -6.45409 -5.42905 -2.63496 0.93849 1.57105 1.91709 2.74694 2.87668 3.28925 3.63058 3.66562 3.68861 3.76956 4.67476 4.73577 4.82639 4.86830 4.90105 4.98937 5.08113 5.17912 5.21556 5.25743 5.36401 5.38277 5.42930 5.58935 5.74535 5.80955 5.85790 5.87630 5.91071 5.94898 5.99554 6.07058 6.09898 6.15304 6.18432 6.35180 6.46752 6.48574 6.82927 6.90201 7.06846 7.32880 7.40664 7.88972 8.00592 8.74056 8.94252 9.86324 10.42827 10.78158 11.81737 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.004889 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.618936 B = 5725.473137 C = 8766.244210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.057 0.943 4 N -0.693 5.693 5 C -0.183 4.183 6 H 0.062 0.938 7 C -0.025 4.025 8 N -0.945 5.945 9 Si 0.898 3.102 10 H -0.290 1.290 11 H -0.296 1.296 12 H -0.292 1.292 13 C 0.151 3.849 14 H 0.067 0.933 15 C -0.129 4.129 16 C -0.119 4.119 17 C -0.134 4.134 18 C 0.110 3.890 19 N -0.613 5.613 20 C 0.473 3.527 21 O -0.405 6.405 22 C 0.049 3.951 23 O -0.268 6.268 24 C 0.127 3.873 25 C -0.136 4.136 26 C -0.187 4.187 27 S 0.098 5.902 28 C -0.332 4.332 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.377 0.623 33 H 0.248 0.752 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.153 0.847 45 H 0.171 0.829 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 5.497 17.956 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.075 0.925 4 N -0.333 5.333 5 C -0.315 4.315 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.597 5.597 9 Si 0.731 3.269 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.219 1.219 13 C 0.047 3.953 14 H 0.085 0.915 15 C -0.167 4.167 16 C -0.157 4.157 17 C -0.173 4.173 18 C -0.014 4.014 19 N -0.353 5.353 20 C 0.255 3.745 21 O -0.270 6.270 22 C -0.030 4.030 23 O -0.181 6.181 24 C 0.070 3.930 25 C -0.168 4.168 26 C -0.322 4.322 27 S 0.358 5.642 28 C -0.467 4.467 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.210 0.790 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.171 0.829 45 H 0.189 0.811 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.807 5.908 17.823 21.183 hybrid contribution -0.907 -0.179 -1.370 1.653 sum 8.899 5.729 16.453 19.563 Atomic orbital electron populations 1.22581 0.99668 1.00677 0.99982 1.20407 0.90604 0.96710 0.85245 0.92496 1.42231 1.72399 1.16840 1.01814 1.18952 1.30458 0.97754 0.84340 0.92050 1.24531 1.03097 0.96921 0.97245 1.69630 1.49394 1.12959 1.27720 0.86370 0.77150 0.78359 0.85041 1.21767 1.22203 1.21919 1.21518 0.78536 0.99617 0.95580 0.91503 1.22042 0.99812 1.00922 0.93962 1.21520 0.95373 1.00774 0.97992 1.21921 0.96320 1.01479 0.97549 1.21623 0.95876 0.99352 0.84551 1.47769 1.09824 1.57990 1.19743 1.19887 0.87063 0.82479 0.85068 1.91320 1.66786 1.47381 1.21472 1.22549 0.95566 0.96618 0.88306 1.86314 1.22543 1.69556 1.39656 1.17982 0.85203 0.96285 0.93547 1.19596 0.94616 1.01887 1.00653 1.25466 0.99021 1.07130 1.00590 1.83978 1.12321 1.55073 1.12864 1.25242 0.98840 1.17805 1.04839 0.94412 0.92660 0.93655 0.78965 0.94256 0.90419 0.91647 0.91862 0.92045 0.91646 0.91224 0.90784 0.91597 0.90422 0.90363 0.82900 0.81122 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.61 37.16 0.32 -2.82 16 2 C 0.18 3.73 1.84 -67.93 -0.12 3.61 16 3 H 0.06 1.31 6.31 -51.93 -0.33 0.99 16 4 N -0.69 -18.10 3.29 -53.42 -0.18 -18.27 16 5 C -0.18 -5.40 8.27 -15.06 -0.12 -5.53 16 6 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 8 N -0.95 -30.39 13.06 55.49 0.72 -29.67 16 9 Si 0.90 24.38 29.55 -169.99 -5.02 19.35 16 10 H -0.29 -7.90 7.11 56.52 0.40 -7.49 16 11 H -0.30 -8.07 7.11 56.52 0.40 -7.66 16 12 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 13 C 0.15 2.46 2.64 -67.60 -0.18 2.28 16 14 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 15 C -0.13 -1.60 4.37 -26.61 -0.12 -1.71 16 16 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 17 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 18 C 0.11 1.18 6.35 -3.71 -0.02 1.16 16 19 N -0.61 -9.47 2.97 -165.23 -0.49 -9.96 16 20 C 0.47 8.88 7.50 -10.99 -0.08 8.79 16 21 O -0.40 -9.90 9.52 -14.36 -0.14 -10.04 16 22 C 0.05 0.74 3.70 36.00 0.13 0.87 16 23 O -0.27 -4.96 9.74 -40.38 -0.39 -5.35 16 24 C 0.13 1.94 6.64 -41.04 -0.27 1.67 16 25 C -0.14 -1.89 10.17 -41.10 -0.42 -2.31 16 26 C -0.19 -2.05 11.22 29.05 0.33 -1.72 16 27 S 0.10 1.03 23.34 -107.50 -2.51 -1.48 16 28 C -0.33 -4.13 10.09 29.12 0.29 -3.84 16 29 H 0.04 0.57 6.45 -51.93 -0.33 0.24 16 30 H 0.05 1.13 8.02 -51.93 -0.42 0.72 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.38 10.64 7.68 -40.82 -0.31 10.32 16 33 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 34 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.93 7.62 -51.93 -0.40 0.54 16 43 H 0.08 1.04 7.44 -51.93 -0.39 0.65 16 44 H 0.15 2.12 8.06 -52.48 -0.42 1.69 16 45 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.16 1.69 7.02 -52.49 -0.37 1.32 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -35.76 372.16 -10.05 -45.81 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.97 Total: 7.08 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.68 Total: -3.08 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.06 Total: -57.90 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.53 Total: -15.39 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.02 Total: 19.35 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.76 -10.05 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.871 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds