Wall clock time and date at job start Tue Mar 31 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47334 * 240.00135 * 2 1 3 5 5 C 1.36938 * 119.99919 * 74.70777 * 4 2 1 6 6 H 1.07999 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99916 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00090 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99867 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47170 * 59.99820 * 9 7 5 11 11 H 1.48501 * 109.46823 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47327 * 299.99475 * 9 7 5 13 13 C 1.53001 * 109.47399 * 119.99906 * 2 1 3 14 14 H 1.08998 * 109.70050 * 73.59248 * 13 2 1 15 15 C 1.53193 * 109.58504 * 313.24153 * 13 2 1 16 16 C 1.53041 * 109.31174 * 185.57755 * 15 13 2 17 17 C 1.53040 * 109.53862 * 61.36120 * 16 15 13 18 18 C 1.53186 * 109.31378 * 298.63476 * 17 16 15 19 19 N 1.46920 * 109.58772 * 193.95071 * 13 2 1 20 20 C 1.34773 * 120.63163 * 353.41303 * 19 13 2 21 21 O 1.21285 * 120.00174 * 354.41676 * 20 19 13 22 22 C 1.50699 * 120.00333 * 174.41107 * 20 19 13 23 23 O 1.42900 * 109.47486 * 180.02562 * 22 20 19 24 24 C 1.36229 * 116.99908 * 179.97438 * 23 22 20 25 25 C 1.38669 * 122.58849 * 179.97438 * 24 23 22 26 26 C 1.33431 * 114.89037 * 179.97438 * 25 24 23 27 27 S 1.75865 * 109.65476 * 0.02562 * 26 25 24 28 28 C 1.33627 * 122.58791 * 359.71013 * 24 23 22 29 29 H 1.09000 * 109.47225 * 300.00020 * 1 2 3 30 30 H 1.08998 * 109.47333 * 59.99958 * 1 2 3 31 31 H 1.08998 * 109.47357 * 180.02562 * 1 2 3 32 32 H 0.96994 * 119.99962 * 254.71590 * 4 2 1 33 33 H 0.97001 * 119.99927 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.50165 * 65.62372 * 15 13 2 35 35 H 1.09004 * 109.49787 * 305.52316 * 15 13 2 36 36 H 1.08998 * 109.45610 * 301.33984 * 16 15 13 37 37 H 1.08998 * 109.45888 * 181.38501 * 16 15 13 38 38 H 1.08998 * 109.49688 * 58.58615 * 17 16 15 39 39 H 1.08997 * 109.49715 * 178.65462 * 17 16 15 40 40 H 1.09005 * 109.59031 * 174.42408 * 18 17 16 41 41 H 1.08996 * 109.58890 * 294.84789 * 18 17 16 42 42 H 1.09004 * 109.47375 * 300.00590 * 22 20 19 43 43 H 1.08997 * 109.47014 * 60.00108 * 22 20 19 44 44 H 1.08003 * 122.55274 * 0.02562 * 25 24 23 45 45 H 1.07994 * 125.17267 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.19824 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.9517 -0.0747 -2.4174 6 1 1.5395 0.9202 -2.4988 7 6 2.4140 -0.7293 -3.5509 8 7 2.9168 -1.9416 -3.4518 9 14 2.3237 0.1111 -5.2168 10 1 3.1141 1.3678 -5.1808 11 1 2.8778 -0.7920 -6.2573 12 1 0.9082 0.4256 -5.5365 13 6 2.0401 -0.7212 1.2492 14 1 1.8893 -1.7953 1.1408 15 6 1.2790 -0.2175 2.4797 16 6 1.8867 -0.8382 3.7397 17 6 3.3500 -0.4084 3.8673 18 6 4.1344 -0.9143 2.6527 19 7 3.4708 -0.4405 1.4304 20 6 4.1612 0.2390 0.4934 21 8 3.6292 0.5368 -0.5550 22 6 5.5944 0.6289 0.7484 23 8 6.1045 1.3358 -0.3839 24 6 7.3963 1.7630 -0.3158 25 6 8.0083 2.4587 -1.3475 26 6 9.2767 2.8032 -1.1176 27 16 9.7639 2.2377 0.4748 28 6 8.1699 1.5484 0.7524 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.3888 -1.5840 -1.1231 33 1 3.2402 -2.3988 -4.2438 34 1 0.2306 -0.5050 2.4019 35 1 1.3559 0.8683 2.5357 36 1 1.8319 -1.9247 3.6720 37 1 1.3314 -0.5006 4.6148 38 1 3.4073 0.6792 3.9102 39 1 3.7753 -0.8313 4.7774 40 1 5.1530 -0.5279 2.6886 41 1 4.1545 -2.0040 2.6586 42 1 5.6456 1.2691 1.6292 43 1 6.1906 -0.2680 0.9161 44 1 7.4969 2.7037 -2.2667 45 1 9.9080 3.3466 -1.8049 46 1 7.8635 1.0298 1.6488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:14 Heat of formation + Delta-G solvation = 0.735392 kcal Electronic energy + Delta-G solvation = -28559.763231 eV Core-core repulsion = 24771.064116 eV Total energy + Delta-G solvation = -3788.699115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66044 -40.60126 -38.22286 -37.11581 -36.61458 -34.25798 -33.67243 -31.52191 -30.10422 -29.85479 -29.24253 -26.31166 -25.76459 -24.53319 -24.05098 -21.87968 -21.43198 -20.66869 -20.30346 -19.25421 -18.71614 -17.93060 -17.50117 -17.27483 -16.72588 -16.67438 -15.76426 -15.51064 -15.36619 -15.25827 -14.98577 -14.82978 -14.63386 -14.25924 -14.12842 -14.00928 -13.64494 -13.57779 -13.49076 -13.40148 -12.97033 -12.78731 -12.75598 -12.56006 -12.39751 -12.15709 -11.94100 -11.93256 -11.87491 -11.67971 -11.59090 -11.39579 -11.17043 -10.76446 -9.86469 -9.80765 -9.38106 -8.93583 -8.58159 -7.77246 -4.94150 -0.00558 0.68260 0.97269 1.40224 1.45664 1.50034 1.69843 1.72808 1.90606 2.65357 2.66761 3.53186 3.56401 3.83737 3.86391 3.95363 4.01746 4.03175 4.11803 4.16396 4.32938 4.34392 4.36994 4.39247 4.43748 4.64426 4.72895 4.76420 4.87166 4.90264 4.94511 4.96129 5.07039 5.09746 5.16080 5.20491 5.22256 5.29358 5.42694 5.48666 5.55946 5.61789 5.90299 6.27659 6.44609 6.62901 7.49287 7.58261 8.29898 8.52133 9.48247 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.004889 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.618936 B = 5725.473137 C = 8766.244210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.178 3.822 3 H 0.032 0.968 4 N -0.697 5.697 5 C -0.166 4.166 6 H 0.051 0.949 7 C -0.091 4.091 8 N -0.980 5.980 9 Si 0.954 3.046 10 H -0.295 1.295 11 H -0.297 1.297 12 H -0.280 1.280 13 C 0.153 3.847 14 H 0.057 0.943 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.099 3.901 19 N -0.609 5.609 20 C 0.464 3.536 21 O -0.481 6.481 22 C 0.056 3.944 23 O -0.316 6.316 24 C 0.090 3.910 25 C -0.177 4.177 26 C -0.175 4.175 27 S 0.159 5.841 28 C -0.329 4.329 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.045 0.955 32 H 0.362 0.638 33 H 0.240 0.760 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.136 0.864 45 H 0.201 0.799 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.309 5.954 21.635 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.049 0.951 4 N -0.335 5.335 5 C -0.299 4.299 6 H 0.069 0.931 7 C -0.281 4.281 8 N -0.635 5.635 9 Si 0.786 3.214 10 H -0.223 1.223 11 H -0.223 1.223 12 H -0.206 1.206 13 C 0.050 3.950 14 H 0.075 0.925 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.022 4.022 19 N -0.347 5.347 20 C 0.249 3.751 21 O -0.352 6.352 22 C -0.023 4.023 23 O -0.230 6.230 24 C 0.034 3.966 25 C -0.208 4.208 26 C -0.310 4.310 27 S 0.419 5.581 28 C -0.465 4.465 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.194 0.806 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.116 0.884 44 H 0.154 0.846 45 H 0.218 0.782 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.156 6.383 21.601 25.136 hybrid contribution -1.223 -0.249 -2.334 2.647 sum 9.933 6.134 19.267 22.528 Atomic orbital electron populations 1.22430 0.97902 1.00898 1.00604 1.20518 0.91576 0.95476 0.85490 0.95071 1.42300 1.72396 1.16198 1.02576 1.19136 1.27977 0.96870 0.85921 0.93074 1.25173 1.04629 0.97902 1.00397 1.69781 1.51627 1.14290 1.27817 0.85445 0.77459 0.77000 0.81467 1.22268 1.22320 1.20626 1.21391 0.79890 0.98400 0.95345 0.92546 1.21983 0.99816 1.00804 0.93298 1.21527 0.96036 1.00811 0.96945 1.21906 0.95484 1.01616 0.97529 1.22028 0.97137 0.99946 0.83129 1.47906 1.09516 1.56654 1.20619 1.20676 0.88524 0.81374 0.84537 1.91272 1.68596 1.50872 1.24414 1.22577 0.93080 0.97948 0.88666 1.86240 1.24595 1.70661 1.41491 1.18269 0.84659 0.98349 0.95276 1.19678 0.96139 1.04304 1.00685 1.25863 0.98035 1.05540 1.01603 1.83788 1.09933 1.53111 1.11230 1.25612 0.99682 1.16688 1.04504 0.90419 0.95340 0.93537 0.80629 0.95124 0.89623 0.91910 0.91512 0.89708 0.91623 0.88016 0.88498 0.90898 0.86927 0.88398 0.84612 0.78197 0.79683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.61 71.98 0.62 -5.34 16 2 C 0.18 7.62 1.84 44.99 0.08 7.70 16 3 H 0.03 1.53 6.31 -2.38 -0.02 1.51 16 4 N -0.70 -38.32 3.29 -322.94 -1.06 -39.38 16 5 C -0.17 -10.30 8.27 84.03 0.70 -9.60 16 6 H 0.05 3.21 7.83 -2.91 -0.02 3.19 16 7 C -0.09 -5.87 5.50 84.86 0.47 -5.40 16 8 N -0.98 -65.94 13.06 21.65 0.28 -65.65 16 9 Si 0.95 52.42 29.55 68.60 2.03 54.45 16 10 H -0.29 -16.21 7.11 99.48 0.71 -15.51 16 11 H -0.30 -16.20 7.11 99.48 0.71 -15.50 16 12 H -0.28 -14.60 7.11 99.48 0.71 -13.90 16 13 C 0.15 4.97 2.64 44.98 0.12 5.08 16 14 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 15 C -0.12 -2.72 4.37 30.67 0.13 -2.58 16 16 C -0.12 -1.80 5.88 30.62 0.18 -1.62 16 17 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 18 C 0.10 1.85 6.35 86.36 0.55 2.40 16 19 N -0.61 -18.43 2.97 -795.04 -2.36 -20.79 16 20 C 0.46 17.89 7.50 87.66 0.66 18.55 16 21 O -0.48 -24.99 9.52 15.99 0.15 -24.84 16 22 C 0.06 1.67 3.70 71.24 0.26 1.93 16 23 O -0.32 -12.20 9.74 -77.13 -0.75 -12.95 16 24 C 0.09 2.80 6.64 21.33 0.14 2.94 16 25 C -0.18 -5.07 10.17 21.28 0.22 -4.85 16 26 C -0.17 -3.59 11.22 66.73 0.75 -2.84 16 27 S 0.16 2.86 23.34 -56.49 -1.32 1.54 16 28 C -0.33 -7.55 10.09 66.77 0.67 -6.88 16 29 H 0.08 2.27 6.45 -2.39 -0.02 2.25 16 30 H 0.03 1.19 8.02 -2.39 -0.02 1.17 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.36 21.60 7.68 -92.71 -0.71 20.88 16 33 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.09 1.80 6.71 -2.39 -0.02 1.78 16 35 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 1.37 5.93 -2.38 -0.01 1.35 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 2.47 7.62 -2.38 -0.02 2.46 16 43 H 0.10 2.47 7.44 -2.39 -0.02 2.45 16 44 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 45 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 46 H 0.19 3.21 7.02 -2.91 -0.02 3.19 16 Total: -1.00 -85.33 372.16 2.98 -82.35 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.28 Total: 27.33 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.73 Total: -2.04 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -3.14 Total: -125.83 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.60 Total: -37.79 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 2.03 Total: 54.45 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.32 Total: 1.54 kcal Total: -85.33 2.98 -82.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.082 kcal (2) G-P(sol) polarization free energy of solvation -85.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds