Wall clock time and date at job start Tue Mar 31 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47384 * 2 1 4 4 N 1.46504 * 109.47079 * 120.00013 * 2 1 3 5 5 C 1.36937 * 119.99816 * 285.87482 * 4 2 1 6 6 H 1.07998 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99604 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00408 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99743 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47346 * 89.99782 * 9 7 5 11 11 H 1.48501 * 109.47191 * 210.00252 * 9 7 5 12 12 H 1.48501 * 109.47061 * 329.99866 * 9 7 5 13 13 C 1.53007 * 109.47024 * 239.99712 * 2 1 3 14 14 H 1.08992 * 109.70274 * 292.94679 * 13 2 1 15 15 C 1.53185 * 109.58533 * 53.30617 * 13 2 1 16 16 C 1.53039 * 109.31430 * 174.42273 * 15 13 2 17 17 C 1.53043 * 109.53355 * 298.63126 * 16 15 13 18 18 C 1.52760 * 109.38291 * 61.24278 * 17 16 15 19 19 N 1.46924 * 109.00828 * 305.58528 * 18 17 16 20 20 C 1.34774 * 120.63248 * 233.58987 * 19 18 17 21 21 O 1.21279 * 120.00415 * 174.03979 * 20 19 18 22 22 C 1.50703 * 120.00068 * 354.03351 * 20 19 18 23 23 O 1.42898 * 109.47487 * 180.02562 * 22 20 19 24 24 C 1.36231 * 116.99978 * 179.97438 * 23 22 20 25 25 C 1.38662 * 122.58240 * 179.97438 * 24 23 22 26 26 C 1.33433 * 114.88306 * 179.97438 * 25 24 23 27 27 S 1.75869 * 109.65761 * 0.02562 * 26 25 24 28 28 C 1.33624 * 122.58665 * 359.97438 * 24 23 22 29 29 H 1.09002 * 109.46909 * 300.00428 * 1 2 3 30 30 H 1.09002 * 109.47081 * 60.00063 * 1 2 3 31 31 H 1.08997 * 109.47384 * 179.97438 * 1 2 3 32 32 H 0.96999 * 119.99839 * 105.86752 * 4 2 1 33 33 H 0.97000 * 119.99940 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.49637 * 294.37482 * 15 13 2 35 35 H 1.09005 * 109.50407 * 54.46753 * 15 13 2 36 36 H 1.08998 * 109.46043 * 58.65342 * 16 15 13 37 37 H 1.09001 * 109.46064 * 178.61484 * 16 15 13 38 38 H 1.09004 * 109.49503 * 181.31487 * 17 16 15 39 39 H 1.08996 * 109.49844 * 301.37972 * 17 16 15 40 40 H 1.08997 * 109.50933 * 185.70484 * 18 17 16 41 41 H 1.08998 * 109.43455 * 65.42156 * 18 17 16 42 42 H 1.09001 * 109.46919 * 59.99949 * 22 20 19 43 43 H 1.09004 * 109.46648 * 300.00753 * 22 20 19 44 44 H 1.07997 * 122.56188 * 0.02562 * 25 24 23 45 45 H 1.08003 * 125.17382 * 179.97438 * 26 25 24 46 46 H 1.07997 * 125.19680 * 359.75193 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.9407 -0.0796 2.4192 6 1 1.5198 0.9116 2.5019 7 6 2.4039 -0.7338 3.5525 8 7 2.9172 -1.9415 3.4517 9 14 2.2986 0.1001 5.2208 10 1 1.0012 -0.2350 5.8607 11 1 3.4122 -0.3731 6.0818 12 1 2.3990 1.5714 5.0460 13 6 2.0400 -0.7213 -1.2493 14 1 1.7853 -1.7796 -1.1923 15 6 1.3981 -0.1050 -2.4961 16 6 2.0149 -0.7350 -3.7470 17 6 3.5163 -0.4405 -3.7810 18 6 4.1816 -1.0556 -2.5511 19 7 3.4984 -0.5702 -1.3444 20 6 4.1954 0.0078 -0.3461 21 8 3.6109 0.5012 0.5951 22 6 5.7011 0.0411 -0.3994 23 8 6.2044 0.7011 0.7638 24 6 7.5575 0.8164 0.8726 25 6 8.1697 1.4354 1.9519 26 6 9.5029 1.4618 1.9018 27 16 10.0553 0.6745 0.4294 28 6 8.3969 0.3418 -0.0524 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 2.3965 -1.5808 1.1219 33 1 3.2412 -2.3984 4.2436 34 1 0.3248 -0.2951 -2.4845 35 1 1.5774 0.9702 -2.5041 36 1 1.8567 -1.8132 -3.7262 37 1 1.5425 -0.3159 -4.6354 38 1 3.9509 -0.8695 -4.6839 39 1 3.6757 0.6378 -3.7774 40 1 5.2309 -0.7622 -2.5199 41 1 4.1051 -2.1417 -2.6025 42 1 6.0213 0.5804 -1.2908 43 1 6.0859 -0.9782 -0.4336 44 1 7.6104 1.8627 2.7709 45 1 10.1450 1.9008 2.6510 46 1 8.1022 -0.1717 -0.9556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752156399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:20 Heat of formation + Delta-G solvation = 3.490137 kcal Electronic energy + Delta-G solvation = -28689.415099 eV Core-core repulsion = 24900.835439 eV Total energy + Delta-G solvation = -3788.579660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65098 -40.59189 -38.18778 -37.13263 -36.58051 -34.24135 -33.67403 -31.53056 -30.09431 -29.83333 -29.28051 -26.27860 -25.77607 -24.51904 -24.01167 -21.91751 -21.43824 -20.65752 -20.31348 -19.24545 -18.71652 -17.90749 -17.46488 -17.25090 -16.70205 -16.68164 -15.72564 -15.52713 -15.47641 -15.24346 -14.94933 -14.85024 -14.62337 -14.27600 -14.11462 -13.93387 -13.64283 -13.57634 -13.52194 -13.36545 -13.00044 -12.80680 -12.74530 -12.55310 -12.40527 -12.15533 -11.98681 -11.88879 -11.85065 -11.69354 -11.61329 -11.36608 -11.17508 -10.77278 -9.80460 -9.78181 -9.42010 -8.92631 -8.51319 -7.77941 -4.94560 -0.00329 0.68663 0.97323 1.40256 1.43437 1.50810 1.70218 1.75168 1.97573 2.64560 2.69042 3.55861 3.57146 3.83653 3.85264 3.96002 4.02113 4.03139 4.13110 4.20321 4.33113 4.34728 4.37941 4.40079 4.44061 4.65006 4.73231 4.76916 4.88432 4.90296 4.94710 4.95749 5.06526 5.10631 5.16062 5.21467 5.22748 5.29304 5.42898 5.49234 5.57647 5.62852 5.91581 6.29454 6.43840 6.66076 7.49306 7.61144 8.27708 8.50113 9.47359 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007992 B = 0.005127 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.732311 B = 5459.992162 C = 8522.231870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.177 3.823 3 H 0.034 0.966 4 N -0.696 5.696 5 C -0.165 4.165 6 H 0.051 0.949 7 C -0.090 4.090 8 N -0.978 5.978 9 Si 0.953 3.047 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.284 1.284 13 C 0.153 3.847 14 H 0.060 0.940 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.100 3.900 19 N -0.611 5.611 20 C 0.464 3.536 21 O -0.476 6.476 22 C 0.057 3.943 23 O -0.314 6.314 24 C 0.091 3.909 25 C -0.177 4.177 26 C -0.175 4.175 27 S 0.159 5.841 28 C -0.331 4.331 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.363 0.637 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.202 0.798 46 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 3.292 -19.955 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 H 0.052 0.948 4 N -0.334 5.334 5 C -0.298 4.298 6 H 0.069 0.931 7 C -0.279 4.279 8 N -0.633 5.633 9 Si 0.786 3.214 10 H -0.216 1.216 11 H -0.228 1.228 12 H -0.210 1.210 13 C 0.050 3.950 14 H 0.078 0.922 15 C -0.160 4.160 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.021 4.021 19 N -0.350 5.350 20 C 0.248 3.752 21 O -0.345 6.345 22 C -0.021 4.021 23 O -0.228 6.228 24 C 0.035 3.965 25 C -0.208 4.208 26 C -0.310 4.310 27 S 0.419 5.581 28 C -0.467 4.467 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.194 0.806 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.154 0.846 45 H 0.219 0.781 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.875 3.522 -19.797 23.352 hybrid contribution -1.380 0.133 2.123 2.536 sum 10.494 3.655 -17.673 20.877 Atomic orbital electron populations 1.22416 0.97972 1.00858 1.00630 1.20553 0.91503 0.95681 0.85346 0.94822 1.42372 1.71841 1.16630 1.02578 1.19137 1.27736 0.97184 0.85748 0.93055 1.25152 1.04514 0.97968 1.00295 1.69776 1.51263 1.14555 1.27663 0.85379 0.76512 0.77631 0.81920 1.21627 1.22825 1.21014 1.21393 0.79265 0.98860 0.95478 0.92170 1.21967 1.00620 1.00092 0.93292 1.21515 0.95506 1.01196 0.96985 1.21833 0.95920 1.01306 0.97547 1.21910 0.97111 0.99551 0.83563 1.47822 1.06967 1.61535 1.18643 1.20488 0.89173 0.82382 0.83115 1.91178 1.69105 1.41581 1.32685 1.22549 0.92636 0.98834 0.88111 1.86244 1.18409 1.74613 1.43535 1.18288 0.83005 0.99323 0.95875 1.19674 0.95101 1.06014 1.00016 1.25866 0.97047 1.05060 1.03045 1.83742 1.03820 1.55380 1.15117 1.25595 0.97426 1.16499 1.07134 0.95262 0.90490 0.93617 0.80591 0.95169 0.89563 0.92250 0.91280 0.89800 0.87966 0.92009 0.88749 0.90730 0.86996 0.89061 0.84641 0.78133 0.79825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.96 8.82 71.98 0.63 -5.32 16 2 C 0.18 7.56 1.78 44.99 0.08 7.64 16 3 H 0.03 1.64 6.47 -2.39 -0.02 1.63 16 4 N -0.70 -37.86 3.05 -322.93 -0.99 -38.85 16 5 C -0.16 -10.17 8.18 84.03 0.69 -9.48 16 6 H 0.05 3.21 7.83 -2.91 -0.02 3.19 16 7 C -0.09 -5.71 5.50 84.86 0.47 -5.25 16 8 N -0.98 -65.22 13.06 21.65 0.28 -64.94 16 9 Si 0.95 52.29 29.55 68.60 2.03 54.32 16 10 H -0.29 -15.25 7.11 99.48 0.71 -14.55 16 11 H -0.30 -16.61 7.11 99.48 0.71 -15.90 16 12 H -0.28 -15.28 7.11 99.48 0.71 -14.57 16 13 C 0.15 4.95 2.57 44.97 0.12 5.06 16 14 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.12 -2.76 4.62 30.67 0.14 -2.62 16 16 C -0.11 -1.80 5.89 30.62 0.18 -1.62 16 17 C -0.13 -1.83 6.06 30.53 0.19 -1.65 16 18 C 0.10 1.91 6.30 86.22 0.54 2.45 16 19 N -0.61 -18.73 2.98 -795.87 -2.37 -21.10 16 20 C 0.46 18.27 7.43 87.66 0.65 18.92 16 21 O -0.48 -24.70 9.33 16.01 0.15 -24.55 16 22 C 0.06 1.82 3.77 71.24 0.27 2.09 16 23 O -0.31 -12.73 9.74 -77.15 -0.75 -13.49 16 24 C 0.09 2.99 6.64 21.32 0.14 3.13 16 25 C -0.18 -5.35 10.17 21.28 0.22 -5.14 16 26 C -0.17 -3.82 11.22 66.73 0.75 -3.07 16 27 S 0.16 3.08 23.34 -56.49 -1.32 1.76 16 28 C -0.33 -8.18 10.09 66.77 0.67 -7.51 16 29 H 0.03 1.21 8.01 -2.39 -0.02 1.20 16 30 H 0.08 2.25 6.47 -2.39 -0.02 2.23 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.36 21.33 7.70 -92.71 -0.71 20.61 16 33 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.09 1.79 6.70 -2.39 -0.02 1.78 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.41 5.96 -2.39 -0.01 1.40 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 2.60 7.16 -2.39 -0.02 2.59 16 43 H 0.09 2.60 7.84 -2.38 -0.02 2.58 16 44 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 46 H 0.18 3.55 7.02 -2.91 -0.02 3.53 16 Total: -1.00 -84.09 372.11 3.04 -81.05 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.28 Total: 28.14 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.73 Total: -2.35 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -3.07 Total: -124.88 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -0.60 Total: -38.03 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 2.03 Total: 54.32 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.32 Total: 1.76 kcal Total: -84.09 3.04 -81.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752156399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.537 kcal (2) G-P(sol) polarization free energy of solvation -84.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds