Wall clock time and date at job start Tue Mar 31 2020 20:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47338 * 2 1 4 4 O 1.42904 * 109.46996 * 240.00123 * 2 1 3 5 5 C 1.53001 * 109.47053 * 120.00269 * 2 1 3 6 6 N 1.46904 * 109.46850 * 184.99851 * 5 2 1 7 7 C 1.46901 * 110.99885 * 179.97438 * 6 5 2 8 8 H 1.09003 * 109.46917 * 34.99555 * 7 6 5 9 9 C 1.53000 * 109.47114 * 155.00130 * 7 6 5 10 10 N 1.46504 * 109.47074 * 304.99613 * 9 7 6 11 11 C 1.34774 * 119.99896 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99597 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.46765 * 180.02562 * 13 11 10 15 15 C 1.76197 * 99.99986 * 180.02562 * 14 13 11 16 16 H 1.07992 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99912 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47107 * 89.99975 * 19 17 15 21 21 H 1.48496 * 109.46906 * 209.99933 * 19 17 15 22 22 H 1.48497 * 109.46993 * 329.99941 * 19 17 15 23 23 C 1.50703 * 109.47187 * 275.00428 * 7 6 5 24 24 C 1.38235 * 120.00292 * 139.99945 * 23 7 6 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 7 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 319.97237 * 23 7 6 29 29 H 1.08996 * 109.47378 * 59.99745 * 1 2 3 30 30 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46785 * 299.99913 * 1 2 3 32 32 H 0.96699 * 113.99627 * 60.00199 * 4 2 1 33 33 H 1.09003 * 109.47257 * 64.99766 * 5 2 1 34 34 H 1.08998 * 109.47268 * 304.99982 * 5 2 1 35 35 H 1.00896 * 111.00043 * 56.04554 * 6 5 2 36 36 H 1.08993 * 109.47174 * 65.00226 * 9 7 6 37 37 H 1.08998 * 109.47066 * 185.00061 * 9 7 6 38 38 H 0.96995 * 119.99593 * 0.02562 * 10 9 7 39 39 H 1.08993 * 109.47016 * 300.00046 * 13 11 10 40 40 H 1.08998 * 109.47193 * 60.00255 * 13 11 10 41 41 H 0.97003 * 120.00019 * 180.02562 * 18 17 15 42 42 H 1.08001 * 119.99730 * 359.97438 * 24 23 7 43 43 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 45 45 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00455 * 0.02562 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5041 -0.6177 1.3110 7 6 4.0304 -1.3000 2.5008 8 1 3.4260 -2.1825 2.7106 9 6 5.4790 -1.7222 2.2476 10 7 5.5451 -2.5354 1.0307 11 6 6.7291 -3.0215 0.6086 12 8 7.7397 -2.7862 1.2363 13 6 6.7971 -3.8576 -0.6434 14 16 8.5108 -4.3571 -0.9429 15 6 8.3028 -5.2927 -2.4214 16 1 7.3204 -5.4051 -2.8555 17 6 9.4015 -5.8859 -3.0276 18 7 10.5989 -5.7492 -2.4981 19 14 9.1812 -6.8771 -4.5955 20 1 9.3282 -5.9824 -5.7715 21 1 10.2109 -7.9454 -4.6546 22 1 7.8293 -7.4915 -4.6068 23 6 3.9788 -0.3639 3.6807 24 6 3.6073 -0.8393 4.9244 25 6 3.5606 0.0193 6.0068 26 6 3.8861 1.3531 5.8456 27 6 4.2590 1.8281 4.6022 28 6 4.3036 0.9700 3.5193 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7210 -0.2700 -1.9979 33 1 1.7516 -1.7716 1.2055 34 1 1.6054 -0.2619 2.1370 35 1 3.7996 0.3468 1.2873 36 1 6.1000 -0.8348 2.1258 37 1 5.8408 -2.3054 3.0943 38 1 4.7368 -2.7232 0.5286 39 1 6.1762 -4.7451 -0.5217 40 1 6.4351 -3.2742 -1.4900 41 1 11.3668 -6.1636 -2.9220 42 1 3.3536 -1.8815 5.0505 43 1 3.2699 -0.3519 6.9784 44 1 3.8453 2.0248 6.6903 45 1 4.5130 2.8703 4.4762 46 1 4.5938 1.3414 2.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753296224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:54 Heat of formation + Delta-G solvation = -64.939370 kcal Electronic energy + Delta-G solvation = -26205.565379 eV Core-core repulsion = 22414.018393 eV Total energy + Delta-G solvation = -3791.546986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19387 -38.82218 -38.10324 -36.41458 -33.82841 -32.34878 -32.28949 -31.30859 -30.57344 -29.68022 -27.56132 -25.45592 -25.13444 -23.52504 -22.80186 -21.55332 -20.77008 -20.07758 -17.87070 -17.72628 -17.37843 -16.32000 -16.10881 -16.01391 -15.38483 -15.21529 -14.93656 -14.84081 -14.72825 -14.27184 -14.07690 -13.80986 -13.71674 -13.40073 -13.19444 -12.96692 -12.83315 -12.72285 -12.60321 -12.44181 -12.20238 -11.82022 -11.56786 -11.51320 -11.20944 -10.99635 -10.97003 -10.93642 -10.68902 -10.28247 -9.72752 -9.30152 -9.27051 -9.06291 -8.98789 -8.78032 -8.60411 -8.11992 -6.39364 -6.13440 -3.82590 0.95922 1.04757 3.16602 3.27891 3.30975 3.33581 3.37000 3.46626 3.68850 3.90477 3.93088 4.28948 4.42857 4.49593 4.56914 4.65199 4.71518 4.77953 4.80430 4.88393 4.99289 5.11940 5.17022 5.21435 5.23591 5.24024 5.36965 5.46844 5.53488 5.60856 5.65368 5.67248 5.74166 5.78284 5.97977 6.06946 6.10436 6.12984 6.16965 6.31620 6.62879 6.64657 6.85015 7.04564 7.45124 7.68196 8.01316 8.44061 8.84445 9.31865 10.94033 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.002445 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.417726 B =11450.974546 C =13281.460981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.104 3.896 3 H 0.051 0.949 4 O -0.549 6.549 5 C 0.065 3.935 6 N -0.667 5.667 7 C 0.116 3.884 8 H 0.093 0.907 9 C 0.141 3.859 10 N -0.723 5.723 11 C 0.531 3.469 12 O -0.526 6.526 13 C -0.150 4.150 14 S -0.063 6.063 15 C -0.532 4.532 16 H 0.072 0.928 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.111 4.111 24 C -0.108 4.108 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.116 4.116 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.373 0.627 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.343 0.657 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.405 0.595 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.267 0.733 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.744 16.174 13.089 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.045 3.955 3 H 0.069 0.931 4 O -0.354 6.354 5 C -0.064 4.064 6 N -0.299 5.299 7 C 0.005 3.995 8 H 0.111 0.889 9 C 0.016 3.984 10 N -0.377 5.377 11 C 0.317 3.683 12 O -0.401 6.401 13 C -0.301 4.301 14 S 0.164 5.836 15 C -0.681 4.681 16 H 0.090 0.910 17 C -0.137 4.137 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.134 4.134 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.220 0.780 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.164 0.836 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.241 0.759 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.488 15.590 14.142 30.079 hybrid contribution -2.269 0.151 -1.563 2.759 sum -23.757 15.741 12.578 31.151 Atomic orbital electron populations 1.22502 0.96444 1.03049 1.02463 1.21725 0.92176 0.95030 0.86594 0.93137 1.86678 1.76743 1.56746 1.15242 1.22037 0.87893 1.01783 0.94734 1.60577 1.09577 1.21019 1.38707 1.20843 0.96836 0.95791 0.86007 0.88909 1.21133 0.93698 0.95410 0.88143 1.45773 1.10315 1.54012 1.27643 1.20268 0.82786 0.79382 0.85910 1.90686 1.34402 1.58226 1.56831 1.23498 1.07824 1.01418 0.97332 1.85353 0.99006 1.66119 1.33164 1.22884 0.96800 1.37177 1.11206 0.90955 1.24990 0.94483 0.96196 0.98008 1.70030 0.98686 1.42565 1.39161 0.86176 0.78039 0.79323 0.81999 1.20318 1.20838 1.19714 1.20539 0.99995 0.94899 0.95862 1.21089 0.99543 0.99830 0.92207 1.21175 0.99884 0.93769 0.98765 1.21191 0.99477 0.95826 0.97405 1.21138 0.99598 0.99781 0.92856 1.20968 0.99897 0.93205 0.99207 0.92092 0.91560 0.91798 0.78021 0.90012 0.93800 0.83629 0.91769 0.91382 0.75941 0.89441 0.89189 0.92296 0.85862 0.85980 0.86102 0.85951 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.00 9.53 37.16 0.35 -0.65 16 2 C 0.10 0.73 3.76 -26.73 -0.10 0.63 16 3 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 4 O -0.55 -4.95 13.27 -35.23 -0.47 -5.41 16 5 C 0.06 0.49 5.14 -3.82 -0.02 0.47 16 6 N -0.67 -5.86 5.62 -107.94 -0.61 -6.47 16 7 C 0.12 1.06 2.38 -68.86 -0.16 0.89 16 8 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 9 C 0.14 1.80 5.35 -4.04 -0.02 1.78 16 10 N -0.72 -10.78 5.39 -60.29 -0.32 -11.11 16 11 C 0.53 10.66 7.85 -10.99 -0.09 10.58 16 12 O -0.53 -12.65 15.86 5.56 0.09 -12.56 16 13 C -0.15 -3.24 6.16 36.01 0.22 -3.02 16 14 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 15 C -0.53 -15.64 9.50 30.94 0.29 -15.35 16 16 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 19 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.11 -0.95 4.71 -104.62 -0.49 -1.45 16 24 C -0.11 -0.88 9.67 -39.59 -0.38 -1.26 16 25 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.11 -0.94 9.12 -39.58 -0.36 -1.31 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.37 2.01 9.08 45.56 0.41 2.43 16 33 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 34 H 0.04 0.30 8.00 -51.93 -0.42 -0.12 16 35 H 0.34 2.87 6.35 -39.29 -0.25 2.62 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 5.38 8.14 -40.82 -0.33 5.05 16 39 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 40 H 0.09 1.84 8.14 -51.92 -0.42 1.41 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.12 0.85 8.04 -52.49 -0.42 0.42 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.91 6.51 -52.49 -0.34 0.57 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -36.55 400.86 -10.18 -46.72 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.36 Total: 6.44 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -2.05 Total: -10.50 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.20 Total: -43.66 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.38 Total: -17.97 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.55 -10.18 -46.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.216 kcal (2) G-P(sol) polarization free energy of solvation -36.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds