Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47338 * 2 1 4 4 O 1.42904 * 109.46996 * 240.00123 * 2 1 3 5 5 C 1.53001 * 109.47053 * 120.00269 * 2 1 3 6 6 N 1.46904 * 109.46850 * 184.99851 * 5 2 1 7 7 C 1.46901 * 110.99885 * 179.97438 * 6 5 2 8 8 H 1.09003 * 109.46917 * 34.99555 * 7 6 5 9 9 C 1.53000 * 109.47114 * 155.00130 * 7 6 5 10 10 N 1.46504 * 109.47074 * 304.99613 * 9 7 6 11 11 C 1.34774 * 119.99896 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99597 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.46765 * 180.02562 * 13 11 10 15 15 C 1.76197 * 99.99986 * 180.02562 * 14 13 11 16 16 H 1.07992 * 119.99896 * 359.97438 * 15 14 13 17 17 C 1.38800 * 119.99912 * 180.02562 * 15 14 13 18 18 N 1.31632 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99874 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47107 * 89.99975 * 19 17 15 21 21 H 1.48496 * 109.46906 * 209.99933 * 19 17 15 22 22 H 1.48497 * 109.46993 * 329.99941 * 19 17 15 23 23 C 1.50703 * 109.47187 * 275.00428 * 7 6 5 24 24 C 1.38235 * 120.00292 * 139.99945 * 23 7 6 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 7 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 319.97237 * 23 7 6 29 29 H 1.08996 * 109.47378 * 59.99745 * 1 2 3 30 30 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46785 * 299.99913 * 1 2 3 32 32 H 0.96699 * 113.99627 * 60.00199 * 4 2 1 33 33 H 1.09003 * 109.47257 * 64.99766 * 5 2 1 34 34 H 1.08998 * 109.47268 * 304.99982 * 5 2 1 35 35 H 1.00896 * 111.00043 * 56.04554 * 6 5 2 36 36 H 1.08993 * 109.47174 * 65.00226 * 9 7 6 37 37 H 1.08998 * 109.47066 * 185.00061 * 9 7 6 38 38 H 0.96995 * 119.99593 * 0.02562 * 10 9 7 39 39 H 1.08993 * 109.47016 * 300.00046 * 13 11 10 40 40 H 1.08998 * 109.47193 * 60.00255 * 13 11 10 41 41 H 0.97003 * 120.00019 * 180.02562 * 18 17 15 42 42 H 1.08001 * 119.99730 * 359.97438 * 24 23 7 43 43 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 45 45 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.00455 * 0.02562 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5041 -0.6177 1.3110 7 6 4.0304 -1.3000 2.5008 8 1 3.4260 -2.1825 2.7106 9 6 5.4790 -1.7222 2.2476 10 7 5.5451 -2.5354 1.0307 11 6 6.7291 -3.0215 0.6086 12 8 7.7397 -2.7862 1.2363 13 6 6.7971 -3.8576 -0.6434 14 16 8.5108 -4.3571 -0.9429 15 6 8.3028 -5.2927 -2.4214 16 1 7.3204 -5.4051 -2.8555 17 6 9.4015 -5.8859 -3.0276 18 7 10.5989 -5.7492 -2.4981 19 14 9.1812 -6.8771 -4.5955 20 1 9.3282 -5.9824 -5.7715 21 1 10.2109 -7.9454 -4.6546 22 1 7.8293 -7.4915 -4.6068 23 6 3.9788 -0.3639 3.6807 24 6 3.6073 -0.8393 4.9244 25 6 3.5606 0.0193 6.0068 26 6 3.8861 1.3531 5.8456 27 6 4.2590 1.8281 4.6022 28 6 4.3036 0.9700 3.5193 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7210 -0.2700 -1.9979 33 1 1.7516 -1.7716 1.2055 34 1 1.6054 -0.2619 2.1370 35 1 3.7996 0.3468 1.2873 36 1 6.1000 -0.8348 2.1258 37 1 5.8408 -2.3054 3.0943 38 1 4.7368 -2.7232 0.5286 39 1 6.1762 -4.7451 -0.5217 40 1 6.4351 -3.2742 -1.4900 41 1 11.3668 -6.1636 -2.9220 42 1 3.3536 -1.8815 5.0505 43 1 3.2699 -0.3519 6.9784 44 1 3.8453 2.0248 6.6903 45 1 4.5130 2.8703 4.4762 46 1 4.5938 1.3414 2.5476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753296224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -92.639489 kcal Electronic energy + Delta-G solvation = -26206.766546 eV Core-core repulsion = 22414.018393 eV Total energy + Delta-G solvation = -3792.748153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99361 -40.20297 -38.70769 -37.23628 -35.04877 -34.56393 -33.04076 -31.87265 -31.17391 -31.12190 -28.61463 -27.61824 -25.88926 -24.31076 -23.40223 -22.11967 -21.69909 -21.41011 -19.79164 -18.47643 -18.03651 -17.68176 -17.25365 -16.97400 -16.86210 -16.36273 -16.22381 -15.86689 -15.67983 -15.42144 -14.94563 -14.91271 -14.65223 -14.46299 -14.26318 -14.04986 -13.86584 -13.57397 -13.49885 -13.24829 -13.14486 -13.12822 -12.87471 -12.68692 -12.59960 -12.48559 -12.13338 -11.84853 -11.70930 -11.54053 -11.12528 -10.92828 -10.83974 -10.25577 -10.02391 -9.85445 -9.74656 -9.42656 -8.64335 -8.32703 -6.10543 0.35599 0.47001 1.29330 1.43774 1.48759 1.59998 1.68313 2.28630 2.37088 2.84644 3.00865 3.01165 3.35533 3.42752 3.69872 3.88685 3.99829 4.05900 4.11165 4.14812 4.20961 4.23352 4.28178 4.32988 4.34736 4.55042 4.57851 4.59671 4.64664 4.69393 4.79181 4.85381 5.01192 5.03765 5.04947 5.11820 5.28212 5.43689 5.48717 5.53603 5.55132 5.60547 5.98894 6.07221 6.22007 6.35482 6.62202 7.00890 7.08256 7.32826 8.76669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012417 B = 0.002445 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.417726 B =11450.974546 C =13281.460981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 H 0.056 0.944 4 O -0.575 6.575 5 C 0.067 3.933 6 N -0.676 5.676 7 C 0.132 3.868 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.696 5.696 11 C 0.531 3.469 12 O -0.572 6.572 13 C -0.126 4.126 14 S -0.150 6.150 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.258 1.258 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.124 4.124 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.386 0.614 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.345 0.655 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.271 0.729 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.282 16.541 12.809 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.044 3.956 3 H 0.074 0.926 4 O -0.382 6.382 5 C -0.061 4.061 6 N -0.308 5.308 7 C 0.021 3.979 8 H 0.120 0.880 9 C 0.017 3.983 10 N -0.349 5.349 11 C 0.317 3.683 12 O -0.451 6.451 13 C -0.277 4.277 14 S 0.077 5.923 15 C -0.693 4.693 16 H 0.099 0.901 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 C -0.123 4.123 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.143 4.143 28 C -0.143 4.143 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.166 0.834 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.096 15.982 13.863 32.066 hybrid contribution -1.561 0.141 -1.379 2.087 sum -25.657 16.123 12.484 32.773 Atomic orbital electron populations 1.22436 0.95160 1.02858 1.03377 1.21796 0.93132 0.94942 0.85721 0.92587 1.86623 1.77383 1.57739 1.16483 1.22041 0.86957 1.01576 0.95570 1.60544 1.10618 1.21238 1.38428 1.20592 0.94244 0.96433 0.86614 0.88049 1.21265 0.96309 0.94248 0.86508 1.45543 1.08978 1.52499 1.27879 1.20041 0.83560 0.79390 0.85299 1.90674 1.36231 1.60120 1.58057 1.23332 1.02971 1.02623 0.98801 1.85521 1.05715 1.66964 1.34085 1.23202 0.97478 1.37408 1.11256 0.90064 1.26148 0.93899 0.97233 1.01956 1.70191 0.99779 1.43727 1.41137 0.84937 0.78620 0.77527 0.76786 1.19252 1.20186 1.18240 1.20472 1.01107 0.94926 0.95779 1.21301 0.99571 1.00586 0.92224 1.21459 0.99557 0.93893 0.99410 1.21508 0.98687 0.96200 0.97946 1.21402 0.99419 1.00580 0.92853 1.21111 1.00081 0.93341 0.99756 0.91176 0.92256 0.90910 0.76499 0.90716 0.92800 0.83384 0.93025 0.92105 0.74569 0.87552 0.87684 0.91997 0.84910 0.84211 0.84171 0.84431 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.53 71.98 0.69 -0.92 16 2 C 0.10 1.27 3.76 30.60 0.11 1.39 16 3 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 4 O -0.58 -9.58 13.27 -148.98 -1.98 -11.56 16 5 C 0.07 0.91 5.14 86.30 0.44 1.35 16 6 N -0.68 -11.04 5.62 -495.43 -2.79 -13.82 16 7 C 0.13 2.26 2.38 44.17 0.11 2.37 16 8 H 0.10 1.58 7.66 -2.39 -0.02 1.57 16 9 C 0.14 3.56 5.35 86.38 0.46 4.02 16 10 N -0.70 -20.22 5.39 -463.07 -2.50 -22.72 16 11 C 0.53 21.40 7.85 87.66 0.69 22.09 16 12 O -0.57 -28.21 15.86 -3.02 -0.05 -28.25 16 13 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 14 S -0.15 -8.68 20.57 -56.49 -1.16 -9.85 16 15 C -0.55 -32.21 9.50 67.95 0.65 -31.56 16 16 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 17 C 0.01 0.71 5.49 84.86 0.47 1.18 16 18 N -0.91 -57.26 13.22 21.65 0.29 -56.97 16 19 Si 1.00 44.68 29.55 68.60 2.03 46.71 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 C -0.12 -1.95 4.71 -19.87 -0.09 -2.04 16 24 C -0.12 -1.76 9.67 22.27 0.22 -1.54 16 25 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 26 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 27 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 28 C -0.12 -1.93 9.12 22.27 0.20 -1.73 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.39 3.69 9.08 -74.06 -0.67 3.01 16 33 H 0.07 1.12 8.06 -2.39 -0.02 1.10 16 34 H 0.05 0.63 8.00 -2.39 -0.02 0.61 16 35 H 0.35 5.40 6.35 -89.70 -0.57 4.83 16 36 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.42 10.40 8.14 -92.71 -0.75 9.64 16 39 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 40 H 0.10 4.18 8.14 -2.40 -0.02 4.16 16 41 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 42 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 43 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 44 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.13 1.78 6.51 -2.91 -0.02 1.76 16 Total: -1.00 -80.33 400.86 -2.10 -82.43 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.99 Total: 28.69 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 5.05 Total: -14.65 kcal Atomic # 7 Polarization: -88.52 SS G_CDS: -5.00 Total: -93.51 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -2.02 Total: -39.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.85 kcal Total: -80.33 -2.10 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.210 kcal (2) G-P(sol) polarization free energy of solvation -80.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds