Wall clock time and date at job start Tue Mar 31 2020 20:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 6 6 N 1.46905 * 109.47123 * 180.02562 * 5 2 1 7 7 C 1.46902 * 110.99871 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.47140 * 35.00275 * 7 6 5 9 9 C 1.53002 * 109.46947 * 155.00153 * 7 6 5 10 10 N 1.46501 * 109.47124 * 305.00261 * 9 7 6 11 11 C 1.34772 * 119.99879 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00342 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99897 * 179.97438 * 11 10 9 14 14 S 1.80993 * 109.47126 * 180.02562 * 13 11 10 15 15 C 1.76207 * 100.00154 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00135 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47228 * 59.99733 * 19 17 15 21 21 H 1.48504 * 109.47121 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47032 * 299.99771 * 19 17 15 23 23 C 1.50692 * 109.46812 * 274.99984 * 7 6 5 24 24 C 1.38238 * 120.00414 * 319.72593 * 23 7 6 25 25 C 1.38235 * 119.99961 * 179.78736 * 24 23 7 26 26 C 1.38232 * 119.99979 * 0.44737 * 25 24 23 27 27 C 1.38238 * 120.00199 * 359.80806 * 26 25 24 28 28 C 1.38233 * 119.99828 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00234 * 59.99815 * 4 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 5 2 1 34 34 H 1.09004 * 109.46724 * 60.00652 * 5 2 1 35 35 H 1.00906 * 110.99517 * 303.95857 * 6 5 2 36 36 H 1.08999 * 109.46793 * 64.99574 * 9 7 6 37 37 H 1.08992 * 109.46902 * 184.99868 * 9 7 6 38 38 H 0.97002 * 119.99857 * 359.97438 * 10 9 7 39 39 H 1.09006 * 109.47067 * 299.99802 * 13 11 10 40 40 H 1.08997 * 109.47398 * 59.99553 * 13 11 10 41 41 H 0.97001 * 119.99915 * 180.02562 * 18 17 15 42 42 H 1.08002 * 119.99832 * 0.02562 * 24 23 7 43 43 H 1.08001 * 119.99595 * 180.27688 * 25 24 23 44 44 H 1.08004 * 119.99904 * 179.83266 * 26 25 24 45 45 H 1.08000 * 120.00158 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99635 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7213 -1.2492 6 7 3.5091 -0.7218 -1.2489 7 6 4.0355 -1.4071 -2.4368 8 1 3.3801 -1.2164 -3.2866 9 6 5.4391 -0.8833 -2.7476 10 7 5.3970 0.5746 -2.8849 11 6 6.5250 1.2583 -3.1613 12 8 7.5751 0.6667 -3.2960 13 6 6.4815 2.7581 -3.3031 14 16 8.1416 3.3776 -3.6721 15 6 7.8066 5.1040 -3.7818 16 1 6.8014 5.4695 -3.6325 17 6 8.8346 5.9941 -4.0601 18 7 10.0598 5.5486 -4.2416 19 14 8.4793 7.8242 -4.1772 20 1 7.9284 8.3052 -2.8848 21 1 9.7362 8.5540 -4.4823 22 1 7.4909 8.0685 -5.2581 23 6 4.0993 -2.8897 -2.1744 24 6 4.5148 -3.3561 -0.9412 25 6 4.5691 -4.7161 -0.6991 26 6 4.2168 -5.6096 -1.6932 27 6 3.8063 -5.1433 -2.9281 28 6 3.7478 -3.7833 -3.1688 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7210 -1.5953 1.2329 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.8710 0.2178 -1.1837 36 1 6.1152 -1.1524 -1.9361 37 1 5.7942 -1.3258 -3.6782 38 1 4.5570 1.0478 -2.7775 39 1 5.8052 3.0269 -4.1146 40 1 6.1265 3.2009 -2.3726 41 1 10.7783 6.1706 -4.4358 42 1 4.7933 -2.6580 -0.1656 43 1 4.8894 -5.0803 0.2658 44 1 4.2618 -6.6722 -1.5049 45 1 3.5307 -5.8414 -3.7047 46 1 3.4275 -3.4190 -4.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753296225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:56 Heat of formation + Delta-G solvation = -64.735812 kcal Electronic energy + Delta-G solvation = -26219.762609 eV Core-core repulsion = 22428.224450 eV Total energy + Delta-G solvation = -3791.538159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.09207 -39.02101 -38.24651 -36.49478 -33.84088 -32.43518 -32.29438 -31.09704 -30.68805 -29.82337 -27.64779 -25.52473 -25.09563 -23.47520 -22.68729 -21.93690 -20.64116 -20.45506 -17.98675 -17.10647 -17.08291 -16.51006 -16.24662 -16.09917 -15.78474 -15.30495 -15.11108 -14.81039 -14.71415 -14.48174 -14.14723 -13.97999 -13.51473 -13.38202 -13.11245 -13.07009 -12.90943 -12.81032 -12.55604 -12.39046 -12.28622 -11.85485 -11.67758 -11.31984 -11.17249 -11.12768 -11.05347 -11.04398 -10.77612 -10.29113 -9.83838 -9.47835 -9.10151 -9.07041 -8.96844 -8.92298 -8.82345 -8.25088 -6.50871 -6.22054 -3.92928 1.12072 1.25074 2.97850 3.05712 3.22992 3.26502 3.29381 3.50280 3.63261 3.70640 4.17005 4.19786 4.34736 4.56747 4.65488 4.69082 4.71493 4.82128 4.86335 4.93598 4.98506 5.07282 5.12876 5.12979 5.19968 5.31835 5.32949 5.42128 5.52963 5.59927 5.64413 5.73816 5.76001 5.85481 5.87811 5.89435 6.10523 6.25883 6.32457 6.35562 6.49201 6.68294 6.81780 6.97631 7.41662 7.57357 7.59304 8.34261 8.55563 9.23009 10.85313 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.002373 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.444780 B =11797.849038 C =13429.850656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.097 0.903 4 O -0.549 6.549 5 C 0.027 3.973 6 N -0.672 5.672 7 C 0.118 3.882 8 H 0.058 0.942 9 C 0.124 3.876 10 N -0.742 5.742 11 C 0.534 3.466 12 O -0.512 6.512 13 C -0.154 4.154 14 S -0.058 6.058 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C -0.077 4.077 24 C -0.080 4.080 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.115 4.115 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.372 0.628 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.348 0.652 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.392 0.608 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 -19.298 6.379 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.045 3.955 3 H 0.115 0.885 4 O -0.353 6.353 5 C -0.103 4.103 6 N -0.306 5.306 7 C 0.008 3.992 8 H 0.076 0.924 9 C 0.000 4.000 10 N -0.398 5.398 11 C 0.320 3.680 12 O -0.386 6.386 13 C -0.304 4.304 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.078 4.078 24 C -0.098 4.098 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.218 0.782 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.226 0.774 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.157 -20.195 6.617 28.612 hybrid contribution -2.396 2.131 -0.828 3.312 sum -21.553 -18.064 5.789 28.711 Atomic orbital electron populations 1.22481 0.96275 1.02593 1.02966 1.21879 0.92417 0.96703 0.84530 0.88518 1.86628 1.77174 1.28688 1.42835 1.22787 0.88386 1.01464 0.97660 1.60312 1.06838 1.23677 1.39797 1.20625 0.95459 0.91414 0.91658 0.92387 1.21447 0.95450 0.80410 1.02711 1.46039 1.11155 1.07123 1.75496 1.20298 0.83038 0.89367 0.75333 1.90716 1.29669 1.70398 1.47767 1.23535 1.08506 0.93466 1.04930 1.85423 1.00955 1.04614 1.92180 1.22820 0.97520 0.91724 1.56404 0.90996 1.24993 0.94434 0.99580 0.94571 1.70008 0.99958 1.35465 1.44827 0.86223 0.77800 0.82729 0.78739 1.19919 1.20798 1.19969 1.19603 1.00143 0.93604 0.94448 1.21096 0.96818 0.95143 0.96775 1.21217 1.00487 0.93517 0.99269 1.21164 0.99444 0.99567 0.93705 1.21059 1.00759 0.95326 0.97225 1.21034 1.00350 0.93288 0.98664 0.91475 0.91607 0.92284 0.78159 0.90558 0.94254 0.83096 0.90354 0.90738 0.77375 0.89304 0.89153 0.92104 0.84898 0.86179 0.86412 0.86298 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.99 9.53 37.16 0.35 -0.63 16 2 C 0.10 0.71 3.79 -26.73 -0.10 0.61 16 3 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 4 O -0.55 -4.69 13.20 -35.23 -0.47 -5.15 16 5 C 0.03 0.18 5.14 -3.82 -0.02 0.16 16 6 N -0.67 -5.52 5.42 -107.95 -0.59 -6.10 16 7 C 0.12 1.04 2.40 -68.87 -0.17 0.88 16 8 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 9 C 0.12 1.46 5.29 -4.04 -0.02 1.44 16 10 N -0.74 -9.47 4.99 -60.29 -0.30 -9.77 16 11 C 0.53 9.78 7.85 -10.98 -0.09 9.70 16 12 O -0.51 -11.61 15.86 5.56 0.09 -11.53 16 13 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 14 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 15 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 16 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 19 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.08 -0.71 4.71 -104.63 -0.49 -1.20 16 24 C -0.08 -0.76 9.32 -39.58 -0.37 -1.13 16 25 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.11 -0.99 9.67 -39.58 -0.38 -1.38 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.37 2.11 9.05 45.56 0.41 2.52 16 33 H 0.08 0.52 8.00 -51.93 -0.42 0.11 16 34 H 0.04 0.24 8.06 -51.93 -0.42 -0.18 16 35 H 0.35 3.03 6.71 -39.29 -0.26 2.77 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.39 3.83 7.37 -40.82 -0.30 3.53 16 39 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 40 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 1.33 7.73 -52.49 -0.41 0.93 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.87 8.04 -52.49 -0.42 0.45 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.95 401.17 -10.18 -45.13 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.41 Total: 5.85 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -2.06 Total: -11.59 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.15 Total: -41.31 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.38 Total: -16.68 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.95 -10.18 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.601 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds