Wall clock time and date at job start Tue Mar 31 2020 20:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.42903 * 109.46923 * 120.00164 * 2 1 3 5 5 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 6 6 N 1.46905 * 109.47123 * 180.02562 * 5 2 1 7 7 C 1.46902 * 110.99871 * 180.02562 * 6 5 2 8 8 H 1.08998 * 109.47140 * 35.00275 * 7 6 5 9 9 C 1.53002 * 109.46947 * 155.00153 * 7 6 5 10 10 N 1.46501 * 109.47124 * 305.00261 * 9 7 6 11 11 C 1.34772 * 119.99879 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00342 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99897 * 179.97438 * 11 10 9 14 14 S 1.80993 * 109.47126 * 180.02562 * 13 11 10 15 15 C 1.76207 * 100.00154 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.38797 * 120.00135 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99776 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47228 * 59.99733 * 19 17 15 21 21 H 1.48504 * 109.47121 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47032 * 299.99771 * 19 17 15 23 23 C 1.50692 * 109.46812 * 274.99984 * 7 6 5 24 24 C 1.38238 * 120.00414 * 319.72593 * 23 7 6 25 25 C 1.38235 * 119.99961 * 179.78736 * 24 23 7 26 26 C 1.38232 * 119.99979 * 0.44737 * 25 24 23 27 27 C 1.38238 * 120.00199 * 359.80806 * 26 25 24 28 28 C 1.38233 * 119.99828 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00234 * 59.99815 * 4 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 5 2 1 34 34 H 1.09004 * 109.46724 * 60.00652 * 5 2 1 35 35 H 1.00906 * 110.99517 * 303.95857 * 6 5 2 36 36 H 1.08999 * 109.46793 * 64.99574 * 9 7 6 37 37 H 1.08992 * 109.46902 * 184.99868 * 9 7 6 38 38 H 0.97002 * 119.99857 * 359.97438 * 10 9 7 39 39 H 1.09006 * 109.47067 * 299.99802 * 13 11 10 40 40 H 1.08997 * 109.47398 * 59.99553 * 13 11 10 41 41 H 0.97001 * 119.99915 * 180.02562 * 18 17 15 42 42 H 1.08002 * 119.99832 * 0.02562 * 24 23 7 43 43 H 1.08001 * 119.99595 * 180.27688 * 25 24 23 44 44 H 1.08004 * 119.99904 * 179.83266 * 26 25 24 45 45 H 1.08000 * 120.00158 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99635 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0401 -0.7213 -1.2492 6 7 3.5091 -0.7218 -1.2489 7 6 4.0355 -1.4071 -2.4368 8 1 3.3801 -1.2164 -3.2866 9 6 5.4391 -0.8833 -2.7476 10 7 5.3970 0.5746 -2.8849 11 6 6.5250 1.2583 -3.1613 12 8 7.5751 0.6667 -3.2960 13 6 6.4815 2.7581 -3.3031 14 16 8.1416 3.3776 -3.6721 15 6 7.8066 5.1040 -3.7818 16 1 6.8014 5.4695 -3.6325 17 6 8.8346 5.9941 -4.0601 18 7 10.0598 5.5486 -4.2416 19 14 8.4793 7.8242 -4.1772 20 1 7.9284 8.3052 -2.8848 21 1 9.7362 8.5540 -4.4823 22 1 7.4909 8.0685 -5.2581 23 6 4.0993 -2.8897 -2.1744 24 6 4.5148 -3.3561 -0.9412 25 6 4.5691 -4.7161 -0.6991 26 6 4.2168 -5.6096 -1.6932 27 6 3.8063 -5.1433 -2.9281 28 6 3.7478 -3.7833 -3.1688 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7210 -1.5953 1.2329 33 1 1.6768 -1.7489 -1.2492 34 1 1.6768 -0.2074 -2.1392 35 1 3.8710 0.2178 -1.1837 36 1 6.1152 -1.1524 -1.9361 37 1 5.7942 -1.3258 -3.6782 38 1 4.5570 1.0478 -2.7775 39 1 5.8052 3.0269 -4.1146 40 1 6.1265 3.2009 -2.3726 41 1 10.7783 6.1706 -4.4358 42 1 4.7933 -2.6580 -0.1656 43 1 4.8894 -5.0803 0.2658 44 1 4.2618 -6.6722 -1.5049 45 1 3.5307 -5.8414 -3.7047 46 1 3.4275 -3.4190 -4.1337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753296225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:56 Heat of formation + Delta-G solvation = -90.752115 kcal Electronic energy + Delta-G solvation = -26220.890760 eV Core-core repulsion = 22428.224450 eV Total energy + Delta-G solvation = -3792.666311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04005 -40.15334 -38.85825 -37.35098 -34.94633 -34.57902 -33.01256 -31.72707 -31.27239 -31.19556 -28.63653 -27.63405 -25.79040 -24.28107 -23.33866 -22.48809 -21.84442 -21.34809 -19.88463 -18.17227 -17.82647 -17.40582 -17.23534 -17.08905 -16.87498 -16.64285 -16.18817 -16.10094 -15.76250 -15.48260 -15.14937 -14.85526 -14.68366 -14.48143 -14.17408 -14.07318 -13.76377 -13.67578 -13.38718 -13.35910 -13.17007 -12.88081 -12.83760 -12.81114 -12.63522 -12.49266 -11.96802 -11.80332 -11.73834 -11.66846 -11.12701 -11.02940 -10.85569 -10.27884 -10.23010 -9.73582 -9.60329 -9.44828 -8.66769 -8.34287 -6.12554 0.45843 0.59683 1.26279 1.44103 1.46573 1.56091 1.57581 2.19656 2.27976 2.88431 2.97149 2.99822 3.31056 3.64378 3.70016 3.88703 3.96520 3.97863 4.03141 4.17839 4.23412 4.25186 4.29900 4.36788 4.39287 4.49693 4.52939 4.58280 4.70441 4.72263 4.80399 4.87702 4.89815 5.12305 5.19094 5.25319 5.27997 5.31034 5.41825 5.63353 5.68348 5.71408 6.03129 6.17633 6.19826 6.30406 6.38332 6.95211 7.06858 7.17497 8.74685 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.002373 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.444780 B =11797.849038 C =13429.850656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 H 0.089 0.911 4 O -0.571 6.571 5 C 0.033 3.967 6 N -0.679 5.679 7 C 0.134 3.866 8 H 0.074 0.926 9 C 0.128 3.872 10 N -0.713 5.713 11 C 0.536 3.464 12 O -0.562 6.562 13 C -0.129 4.129 14 S -0.152 6.152 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.998 3.002 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.261 1.261 23 C -0.087 4.087 24 C -0.093 4.093 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.122 4.122 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.382 0.618 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.344 0.656 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.412 0.588 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.122 0.878 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.377 -19.226 6.203 31.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.045 3.955 3 H 0.107 0.893 4 O -0.378 6.378 5 C -0.096 4.096 6 N -0.313 5.313 7 C 0.024 3.976 8 H 0.091 0.909 9 C 0.004 3.996 10 N -0.368 5.368 11 C 0.322 3.678 12 O -0.440 6.440 13 C -0.280 4.280 14 S 0.075 5.925 15 C -0.694 4.694 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.141 4.141 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.165 0.835 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.249 0.751 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.152 -20.146 6.457 30.631 hybrid contribution -1.573 1.951 -0.721 2.607 sum -23.725 -18.195 5.736 30.444 Atomic orbital electron populations 1.22412 0.94991 1.03182 1.03108 1.21912 0.93360 0.96163 0.84071 0.89276 1.86590 1.77721 1.29706 1.43733 1.22761 0.87126 1.01660 0.98056 1.60303 1.08035 1.23360 1.39574 1.20458 0.93499 0.91263 0.92416 0.90868 1.21469 0.97326 0.79177 1.01644 1.45698 1.10371 1.07661 1.73056 1.20071 0.83608 0.88855 0.75257 1.90707 1.31811 1.71011 1.50473 1.23368 1.03608 0.94404 1.06642 1.85621 1.08067 1.05975 1.92812 1.23169 0.98185 0.91801 1.56217 0.89808 1.26139 0.94046 1.05199 0.93847 1.70181 1.01200 1.37385 1.46050 0.85003 0.77890 0.75696 0.79409 1.18644 1.20491 1.18593 1.19660 1.00784 0.93770 0.94626 1.21097 0.97621 0.95528 0.96866 1.21424 1.00495 0.93335 1.00146 1.21455 0.98764 1.00571 0.93529 1.21367 1.00198 0.95566 0.97771 1.21258 1.00223 0.93585 0.99021 0.92067 0.90695 0.91487 0.76971 0.90482 0.92929 0.83483 0.92210 0.91553 0.75110 0.87033 0.87027 0.92006 0.86036 0.85076 0.84483 0.84376 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.53 71.98 0.69 -0.88 16 2 C 0.10 1.26 3.79 30.60 0.12 1.38 16 3 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 4 O -0.57 -9.26 13.20 -148.98 -1.97 -11.23 16 5 C 0.03 0.37 5.14 86.30 0.44 0.81 16 6 N -0.68 -10.15 5.42 -495.45 -2.69 -12.84 16 7 C 0.13 2.15 2.40 44.17 0.11 2.25 16 8 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 9 C 0.13 2.93 5.29 86.38 0.46 3.39 16 10 N -0.71 -17.23 4.99 -463.07 -2.31 -19.54 16 11 C 0.54 19.47 7.85 87.66 0.69 20.16 16 12 O -0.56 -26.17 15.86 -3.01 -0.05 -26.22 16 13 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 14 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 15 C -0.55 -30.99 9.50 67.95 0.65 -30.34 16 16 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 17 C 0.01 0.71 5.49 84.86 0.47 1.17 16 18 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 19 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 23 C -0.09 -1.51 4.71 -19.87 -0.09 -1.60 16 24 C -0.09 -1.72 9.32 22.27 0.21 -1.51 16 25 C -0.14 -2.22 10.05 22.27 0.22 -1.99 16 26 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 27 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 28 C -0.12 -1.90 9.67 22.27 0.22 -1.68 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.38 4.02 9.05 -74.06 -0.67 3.35 16 33 H 0.08 0.88 8.00 -2.39 -0.02 0.87 16 34 H 0.05 0.47 8.06 -2.39 -0.02 0.45 16 35 H 0.34 5.44 6.71 -89.69 -0.60 4.84 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.41 6.99 7.37 -92.71 -0.68 6.30 16 39 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 40 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.12 2.48 7.73 -2.91 -0.02 2.45 16 43 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -77.97 401.17 -1.77 -79.74 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.96 Total: 26.72 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.05 Total: -16.64 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -4.71 Total: -88.24 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -2.01 Total: -37.45 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -77.97 -1.77 -79.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753296225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.014 kcal (2) G-P(sol) polarization free energy of solvation -77.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds