Wall clock time and date at job start Tue Mar 31 2020 20:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46658 * 2 1 4 4 C 1.52997 * 109.47050 * 120.00405 * 2 1 3 5 5 N 1.46903 * 109.47094 * 295.00035 * 4 2 1 6 6 C 1.46892 * 111.00245 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47334 * 180.02562 * 6 5 4 8 8 O 1.21294 * 119.99866 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99931 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99793 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99631 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00149 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47205 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47122 * 119.99894 * 14 12 10 17 17 H 1.48502 * 109.47238 * 240.00112 * 14 12 10 18 18 C 1.53000 * 109.47238 * 240.00242 * 2 1 3 19 19 N 1.46509 * 109.47144 * 64.99764 * 18 2 1 20 20 C 1.34768 * 119.99881 * 179.97438 * 19 18 2 21 21 O 1.21566 * 120.00477 * 0.02562 * 20 19 18 22 22 C 1.47731 * 119.99958 * 180.02562 * 20 19 18 23 23 C 1.40146 * 120.52976 * 180.02562 * 22 20 19 24 24 C 1.38162 * 118.32330 * 180.02562 * 23 22 20 25 25 C 1.38749 * 119.28061 * 0.02562 * 24 23 22 26 26 F 1.35104 * 119.49135 * 179.97438 * 25 24 23 27 27 N 1.32149 * 121.02065 * 0.24694 * 25 24 23 28 28 C 1.31702 * 121.83733 * 359.47573 * 27 25 24 29 29 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47178 * 299.99600 * 1 2 3 31 31 H 1.09004 * 109.47068 * 60.00078 * 1 2 3 32 32 H 1.08993 * 109.47175 * 54.99894 * 4 2 1 33 33 H 1.08994 * 109.47334 * 175.00461 * 4 2 1 34 34 H 1.00904 * 110.99991 * 56.04571 * 5 4 2 35 35 H 1.09000 * 109.47300 * 299.99968 * 6 5 4 36 36 H 1.09005 * 109.46989 * 59.99926 * 6 5 4 37 37 H 0.96994 * 120.00109 * 359.97438 * 9 7 6 38 38 H 0.97003 * 119.99451 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.46913 * 305.00209 * 18 2 1 40 40 H 1.08998 * 109.47289 * 184.99531 * 18 2 1 41 41 H 0.96997 * 119.99641 * 0.02562 * 19 18 2 42 42 H 1.07998 * 120.84120 * 0.02562 * 23 22 20 43 43 H 1.07994 * 120.35678 * 180.02562 * 24 23 22 44 44 H 1.07995 * 119.70312 * 180.26423 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1257 -0.6267 3.6671 7 6 1.7086 0.1784 4.8708 8 8 1.0778 1.2041 4.7255 9 7 2.0365 -0.2414 6.1089 10 6 1.6566 0.4907 7.2040 11 1 1.0949 1.4041 7.0745 12 6 1.9943 0.0576 8.4804 13 7 2.6773 -1.0539 8.6378 14 14 1.4772 1.0556 9.9725 15 1 0.7242 2.2560 9.5284 16 1 0.6129 0.2246 10.8485 17 1 2.6841 1.4799 10.7266 18 6 2.0401 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4425 20 6 1.9965 -0.4129 -3.6659 21 8 2.6280 -1.4454 -3.7796 22 6 1.6061 0.3504 -4.8690 23 6 1.9575 -0.1059 -6.1467 24 6 1.5694 0.6440 -7.2403 25 6 0.8513 1.8142 -7.0403 26 9 0.4700 2.5510 -8.1066 27 7 0.5390 2.2220 -5.8227 28 6 0.8829 1.5376 -4.7513 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2950 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1792 2.4753 35 1 1.6920 -1.6247 3.7300 36 1 3.2127 -0.7038 3.6400 37 1 2.5407 -1.0618 6.2251 38 1 2.9126 -1.3563 9.5289 39 1 1.6054 -1.7197 -1.2952 40 1 3.1264 -0.7993 -1.2057 41 1 1.1489 0.8595 -2.3517 42 1 2.5175 -1.0206 -6.2733 43 1 1.8222 0.3227 -8.2398 44 1 0.6059 1.9007 -3.7727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753606762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:48 Heat of formation + Delta-G solvation = -81.215194 kcal Electronic energy + Delta-G solvation = -27064.428225 eV Core-core repulsion = 22738.255042 eV Total energy + Delta-G solvation = -4326.173184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.66613 -41.17379 -39.54716 -38.41692 -37.33526 -35.10153 -33.91631 -33.39956 -32.79365 -31.47295 -31.17598 -27.46406 -27.18590 -25.31476 -24.75979 -24.22650 -23.04906 -21.30427 -20.52959 -19.30530 -18.89390 -18.24230 -17.97509 -17.86229 -16.73992 -16.60566 -15.95890 -15.86173 -15.61956 -15.53730 -15.03684 -14.70702 -14.47538 -14.39990 -14.16668 -13.83412 -13.77915 -13.64887 -13.56898 -13.41909 -13.04442 -12.84188 -12.69417 -12.10060 -11.62389 -11.56636 -11.29845 -11.12079 -11.03903 -10.96674 -10.78832 -10.77539 -10.35472 -10.24629 -10.22946 -9.80459 -9.53530 -9.47842 -8.48997 -8.09762 -7.97601 -6.43269 -3.84124 -0.18483 0.37306 2.20652 2.57452 2.80570 3.06758 3.15350 3.26103 3.33238 3.70426 3.89027 3.97761 4.03863 4.07401 4.22439 4.26519 4.60372 4.63077 4.67463 4.77288 4.85728 5.10144 5.15510 5.23641 5.25557 5.27717 5.34952 5.46169 5.53668 5.64672 5.75557 5.76823 5.79319 5.90013 5.96065 6.03810 6.11450 6.24986 6.82149 6.95408 7.16442 7.54020 7.61980 7.65832 8.05013 8.59569 9.16435 9.52791 10.03959 10.74490 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.001422 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.421403 B =19681.345715 C =20341.389671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.125 3.875 19 N -0.719 5.719 20 C 0.565 3.435 21 O -0.531 6.531 22 C -0.199 4.199 23 C 0.012 3.988 24 C -0.199 4.199 25 C 0.330 3.670 26 F -0.106 7.106 27 N -0.515 5.515 28 C 0.175 3.825 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.349 0.651 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.401 0.599 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -1.059 -29.940 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.001 3.999 19 N -0.371 5.371 20 C 0.351 3.649 21 O -0.408 6.408 22 C -0.204 4.204 23 C -0.014 4.014 24 C -0.220 4.220 25 C 0.177 3.823 26 F -0.085 7.085 27 N -0.229 5.229 28 C 0.016 3.984 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.170 0.830 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.237 0.763 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.432 0.020 -29.902 29.936 hybrid contribution -0.367 -0.988 0.693 1.261 sum -1.799 -0.968 -29.209 29.281 Atomic orbital electron populations 1.21920 0.94646 1.02174 1.02379 1.21386 0.96521 1.01284 0.93017 0.89109 1.21872 1.00832 0.94420 0.89285 1.60083 1.21046 1.49043 1.00018 1.21671 1.01199 0.95381 0.89987 1.19811 0.85638 0.87937 0.84042 1.90519 1.44354 1.26244 1.85714 1.41872 1.49442 1.24258 1.04442 1.19761 1.32778 1.06795 0.83597 0.87847 1.25265 0.96895 0.96648 0.99126 1.69620 1.38876 1.21784 1.23981 0.85799 0.78295 0.79566 0.80674 1.19212 1.20775 1.20737 1.21472 1.00612 0.95255 0.82548 1.45917 1.57519 1.27915 1.05735 1.17819 0.79611 0.84738 0.82760 1.90819 1.39676 1.23827 1.86491 1.21066 1.05202 0.98789 0.95356 1.21666 0.91950 0.98129 0.89636 1.21885 1.02481 0.95488 1.02135 1.18441 0.92756 0.87962 0.83104 1.91671 1.88742 1.76508 1.51537 1.67037 1.23132 1.34665 0.98046 1.22769 0.90270 0.88896 0.96461 0.92532 0.91245 0.92797 0.95113 0.90697 0.83034 0.93842 0.89536 0.77449 0.91914 0.90924 0.90736 0.76325 0.82164 0.82472 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.10 -0.86 2.63 -90.62 -0.24 -1.10 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.07 0.71 5.14 -3.82 -0.02 0.69 16 5 N -0.67 -10.00 6.12 -115.07 -0.70 -10.71 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.22 7.82 -10.98 -0.09 10.13 16 8 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 14 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 C 0.12 0.97 5.06 -4.04 -0.02 0.95 16 19 N -0.72 -4.82 5.24 -61.28 -0.32 -5.14 16 20 C 0.57 4.78 7.78 -12.39 -0.10 4.69 16 21 O -0.53 -6.35 16.42 5.31 0.09 -6.26 16 22 C -0.20 -1.33 5.89 -104.83 -0.62 -1.95 16 23 C 0.01 0.07 9.71 -38.89 -0.38 -0.31 16 24 C -0.20 -1.02 10.07 -39.42 -0.40 -1.42 16 25 C 0.33 2.44 8.41 -17.23 -0.14 2.29 16 26 F -0.11 -0.83 17.29 2.25 0.04 -0.79 16 27 N -0.51 -4.21 10.36 -13.21 -0.14 -4.35 16 28 C 0.17 1.07 10.71 -17.13 -0.18 0.89 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.66 6.68 -51.93 -0.35 0.31 16 31 H 0.05 0.33 7.18 -51.93 -0.37 -0.05 16 32 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.35 5.37 6.68 -39.29 -0.26 5.11 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 1.75 5.71 -40.82 -0.23 1.52 16 42 H 0.16 0.78 7.73 -52.49 -0.41 0.38 16 43 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 44 H 0.17 0.56 6.42 -52.49 -0.34 0.22 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -34.15 380.78 -7.29 -41.44 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.60 Total: 10.68 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.12 Total: 6.85 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.50 Total: -58.00 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.77 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.04 Total: -0.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.15 -7.29 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753606762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.773 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds