Wall clock time and date at job start Tue Mar 31 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46658 * 2 1 4 4 C 1.52997 * 109.47050 * 120.00405 * 2 1 3 5 5 N 1.46903 * 109.47094 * 295.00035 * 4 2 1 6 6 C 1.46892 * 111.00245 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47334 * 180.02562 * 6 5 4 8 8 O 1.21294 * 119.99866 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99931 * 180.02562 * 7 6 5 10 10 C 1.37100 * 119.99793 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99976 * 359.97438 * 10 9 7 12 12 C 1.38952 * 119.99631 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00149 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47205 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47122 * 119.99894 * 14 12 10 17 17 H 1.48502 * 109.47238 * 240.00112 * 14 12 10 18 18 C 1.53000 * 109.47238 * 240.00242 * 2 1 3 19 19 N 1.46509 * 109.47144 * 64.99764 * 18 2 1 20 20 C 1.34768 * 119.99881 * 179.97438 * 19 18 2 21 21 O 1.21566 * 120.00477 * 0.02562 * 20 19 18 22 22 C 1.47731 * 119.99958 * 180.02562 * 20 19 18 23 23 C 1.40146 * 120.52976 * 180.02562 * 22 20 19 24 24 C 1.38162 * 118.32330 * 180.02562 * 23 22 20 25 25 C 1.38749 * 119.28061 * 0.02562 * 24 23 22 26 26 F 1.35104 * 119.49135 * 179.97438 * 25 24 23 27 27 N 1.32149 * 121.02065 * 0.24694 * 25 24 23 28 28 C 1.31702 * 121.83733 * 359.47573 * 27 25 24 29 29 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47178 * 299.99600 * 1 2 3 31 31 H 1.09004 * 109.47068 * 60.00078 * 1 2 3 32 32 H 1.08993 * 109.47175 * 54.99894 * 4 2 1 33 33 H 1.08994 * 109.47334 * 175.00461 * 4 2 1 34 34 H 1.00904 * 110.99991 * 56.04571 * 5 4 2 35 35 H 1.09000 * 109.47300 * 299.99968 * 6 5 4 36 36 H 1.09005 * 109.46989 * 59.99926 * 6 5 4 37 37 H 0.96994 * 120.00109 * 359.97438 * 9 7 6 38 38 H 0.97003 * 119.99451 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.46913 * 305.00209 * 18 2 1 40 40 H 1.08998 * 109.47289 * 184.99531 * 18 2 1 41 41 H 0.96997 * 119.99641 * 0.02562 * 19 18 2 42 42 H 1.07998 * 120.84120 * 0.02562 * 23 22 20 43 43 H 1.07994 * 120.35678 * 180.02562 * 24 23 22 44 44 H 1.07995 * 119.70312 * 180.26423 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1257 -0.6267 3.6671 7 6 1.7086 0.1784 4.8708 8 8 1.0778 1.2041 4.7255 9 7 2.0365 -0.2414 6.1089 10 6 1.6566 0.4907 7.2040 11 1 1.0949 1.4041 7.0745 12 6 1.9943 0.0576 8.4804 13 7 2.6773 -1.0539 8.6378 14 14 1.4772 1.0556 9.9725 15 1 0.7242 2.2560 9.5284 16 1 0.6129 0.2246 10.8485 17 1 2.6841 1.4799 10.7266 18 6 2.0401 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4425 20 6 1.9965 -0.4129 -3.6659 21 8 2.6280 -1.4454 -3.7796 22 6 1.6061 0.3504 -4.8690 23 6 1.9575 -0.1059 -6.1467 24 6 1.5694 0.6440 -7.2403 25 6 0.8513 1.8142 -7.0403 26 9 0.4700 2.5510 -8.1066 27 7 0.5390 2.2220 -5.8227 28 6 0.8829 1.5376 -4.7513 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 1.2950 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1792 2.4753 35 1 1.6920 -1.6247 3.7300 36 1 3.2127 -0.7038 3.6400 37 1 2.5407 -1.0618 6.2251 38 1 2.9126 -1.3563 9.5289 39 1 1.6054 -1.7197 -1.2952 40 1 3.1264 -0.7993 -1.2057 41 1 1.1489 0.8595 -2.3517 42 1 2.5175 -1.0206 -6.2733 43 1 1.8222 0.3227 -8.2398 44 1 0.6059 1.9007 -3.7727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753606762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:47 Heat of formation + Delta-G solvation = -107.719593 kcal Electronic energy + Delta-G solvation = -27065.577542 eV Core-core repulsion = 22738.255042 eV Total energy + Delta-G solvation = -4327.322501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.21190 -41.72396 -40.25537 -40.05911 -38.30637 -36.21892 -35.70319 -33.90261 -33.68173 -33.20614 -32.02140 -28.79258 -27.85655 -26.64944 -25.53134 -25.01544 -24.06953 -21.93168 -21.35312 -20.97766 -19.91181 -19.42400 -18.81876 -18.48722 -17.88158 -17.28416 -17.16674 -16.71540 -16.60633 -16.39387 -16.15731 -15.91420 -15.59228 -15.43411 -15.23188 -14.90418 -14.63935 -14.40949 -14.24169 -14.15472 -14.04687 -13.88693 -13.55012 -13.44264 -13.30765 -13.06864 -12.78726 -12.39966 -12.11593 -12.06447 -11.82565 -11.72458 -11.50475 -11.43239 -11.25877 -10.81311 -10.36538 -10.33184 -10.05864 -10.00691 -9.29695 -8.46236 -5.94902 -0.69766 -0.06452 1.37372 1.42864 1.56892 1.61191 1.96789 2.06244 2.30136 2.33500 2.54604 2.96374 3.21378 3.26236 3.50287 3.55577 3.63622 3.75872 3.93450 3.96996 4.01789 4.14060 4.34757 4.45695 4.49560 4.56092 4.59844 4.61556 4.70793 4.76545 4.83250 4.87286 4.98585 5.03753 5.22493 5.32972 5.36890 5.41924 5.44520 5.90423 6.12038 6.33299 6.39853 6.45549 6.60842 7.05658 7.13425 7.57299 8.12359 8.71336 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033428 B = 0.001422 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.421403 B =19681.345715 C =20341.389671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 H 0.088 0.912 4 C 0.065 3.935 5 N -0.682 5.682 6 C 0.064 3.936 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.993 3.007 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.132 3.868 19 N -0.708 5.708 20 C 0.568 3.432 21 O -0.570 6.570 22 C -0.204 4.204 23 C 0.011 3.989 24 C -0.184 4.184 25 C 0.314 3.686 26 F -0.113 7.113 27 N -0.541 5.541 28 C 0.178 3.822 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.413 0.587 42 H 0.170 0.830 43 H 0.185 0.815 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 -1.467 -30.693 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.064 4.064 5 N -0.315 5.315 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.097 0.903 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.198 1.198 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.008 3.992 19 N -0.360 5.360 20 C 0.354 3.646 21 O -0.450 6.450 22 C -0.209 4.209 23 C -0.015 4.015 24 C -0.205 4.205 25 C 0.161 3.839 26 F -0.092 7.092 27 N -0.256 5.256 28 C 0.020 3.980 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.187 0.813 43 H 0.203 0.797 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.321 -0.389 -30.667 30.698 hybrid contribution -0.404 -0.860 0.864 1.284 sum -1.725 -1.249 -29.803 29.879 Atomic orbital electron populations 1.21910 0.94170 1.02372 1.02559 1.21231 0.96766 1.00816 0.92150 0.89358 1.21975 1.01333 0.94755 0.88354 1.60085 1.20848 1.50107 1.00480 1.21534 1.02244 0.95084 0.87993 1.20917 0.83907 0.87651 0.85055 1.90487 1.45778 1.28199 1.86490 1.41946 1.50017 1.24378 1.04764 1.19718 1.34308 1.07045 0.85314 0.90278 1.26030 0.96437 0.97560 1.01198 1.69677 1.38967 1.22507 1.24976 0.84871 0.78213 0.77993 0.77259 1.19770 1.19609 1.19689 1.21321 1.00255 0.95141 0.82494 1.45810 1.57001 1.28124 1.05059 1.18009 0.78908 0.84241 0.83401 1.90803 1.41593 1.25552 1.87026 1.20998 1.05873 0.99025 0.95049 1.21861 0.91707 0.98425 0.89524 1.22081 1.01009 0.94166 1.03264 1.18726 0.93525 0.88721 0.82895 1.91649 1.88939 1.76819 1.51826 1.67030 1.24137 1.35640 0.98770 1.23089 0.89577 0.88395 0.96975 0.92341 0.92933 0.90759 0.93997 0.90137 0.83492 0.91620 0.87807 0.76976 0.91324 0.91143 0.91238 0.74849 0.81303 0.79746 0.78776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.84 71.98 0.64 -1.51 16 2 C -0.09 -1.35 2.63 -10.79 -0.03 -1.37 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C 0.07 1.27 5.14 86.30 0.44 1.72 16 5 N -0.68 -19.62 6.12 -517.96 -3.17 -22.80 16 6 C 0.06 2.09 6.17 85.56 0.53 2.62 16 7 C 0.44 20.41 7.82 87.66 0.69 21.10 16 8 O -0.62 -33.94 15.78 -3.07 -0.05 -33.99 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 13 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 14 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.13 1.82 5.06 86.38 0.44 2.26 16 19 N -0.71 -8.19 5.24 -466.08 -2.44 -10.63 16 20 C 0.57 8.85 7.78 86.75 0.67 9.52 16 21 O -0.57 -13.14 16.42 -3.92 -0.06 -13.21 16 22 C -0.20 -2.45 5.89 -20.00 -0.12 -2.57 16 23 C 0.01 0.11 9.71 22.72 0.22 0.33 16 24 C -0.18 -1.58 10.07 22.37 0.23 -1.36 16 25 C 0.31 4.31 8.41 84.77 0.71 5.03 16 26 F -0.11 -1.72 17.29 44.97 0.78 -0.94 16 27 N -0.54 -8.32 10.36 -195.72 -2.03 -10.34 16 28 C 0.18 1.91 10.71 85.02 0.91 2.82 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.94 6.68 -2.39 -0.02 0.93 16 31 H 0.07 0.72 7.18 -2.38 -0.02 0.71 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.35 10.42 6.68 -89.69 -0.60 9.82 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 37 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 38 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 2.66 5.71 -92.71 -0.53 2.13 16 42 H 0.17 1.41 7.73 -2.91 -0.02 1.39 16 43 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.20 0.86 6.42 -2.91 -0.02 0.84 16 Total: -1.00 -74.45 380.78 -0.46 -74.91 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.79 Total: 31.82 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 6.61 Total: 20.32 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -8.98 Total: -123.57 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.11 Total: -47.20 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.78 Total: -0.94 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.45 -0.46 -74.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753606762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.808 kcal (2) G-P(sol) polarization free energy of solvation -74.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds