Wall clock time and date at job start Tue Mar 31 2020 20:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99705 * 2 1 4 4 C 1.38736 * 120.05853 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94699 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05468 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.94240 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47178 * 89.99906 * 7 6 5 9 9 C 1.46898 * 110.99995 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47206 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46427 * 65.00254 * 10 9 8 12 12 C 1.53001 * 109.47065 * 184.99822 * 10 9 8 13 13 N 1.46497 * 109.47036 * 304.99967 * 10 9 8 14 14 C 1.34777 * 119.99525 * 154.99621 * 13 10 9 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 10 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 10 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76196 * 100.00314 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00626 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99674 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00584 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46793 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47282 * 119.99523 * 22 20 18 25 25 H 1.48500 * 109.47237 * 240.00020 * 22 20 18 26 26 C 1.38265 * 120.11657 * 0.25111 * 6 5 4 27 27 C 1.38146 * 120.05180 * 359.45143 * 26 6 5 28 28 H 1.08996 * 109.47163 * 60.00299 * 1 2 3 29 29 H 1.09002 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47290 * 299.99676 * 1 2 3 31 31 H 1.08007 * 120.02229 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.96999 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47108 * 329.99866 * 7 6 5 34 34 H 1.08996 * 109.46976 * 209.99711 * 7 6 5 35 35 H 1.00901 * 111.00169 * 303.95605 * 8 7 6 36 36 H 1.08997 * 109.47306 * 59.99947 * 9 8 7 37 37 H 1.08994 * 109.46899 * 299.99961 * 9 8 7 38 38 H 1.09003 * 109.47371 * 300.00160 * 12 10 9 39 39 H 1.09002 * 109.46839 * 60.00194 * 12 10 9 40 40 H 1.08998 * 109.46617 * 180.02562 * 12 10 9 41 41 H 0.97000 * 120.00580 * 335.00367 * 13 10 9 42 42 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 43 43 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 44 44 H 0.97003 * 120.00297 * 179.97438 * 21 20 18 45 45 H 1.07996 * 119.97286 * 179.70808 * 26 6 5 46 46 H 1.08000 * 120.03283 * 180.24993 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0187 0.0028 8 7 4.2087 5.4559 -1.3818 9 6 4.8759 6.7641 -1.4198 10 6 5.0910 7.1848 -2.8751 11 1 4.1246 7.3399 -3.3550 12 6 5.8955 8.4856 -2.9164 13 7 5.8253 6.1338 -3.5839 14 6 5.7065 6.0134 -4.9210 15 8 4.9922 6.7753 -5.5375 16 6 6.4667 4.9361 -5.6509 17 16 6.1070 5.0381 -7.4218 18 6 7.0970 3.7056 -8.0124 19 1 7.6816 3.1187 -7.3194 20 6 7.1249 3.4095 -9.3682 21 7 6.4112 4.1238 -10.2127 22 14 8.1739 1.9964 -9.9943 23 1 8.8740 1.3557 -8.8520 24 1 7.3067 0.9966 -10.6677 25 1 9.1756 2.5139 -10.9608 26 6 1.9209 3.6048 0.0068 27 6 1.2914 2.3752 0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3800 0.0005 32 1 5.1344 2.5752 0.0011 33 1 4.9437 4.9380 0.5169 34 1 3.3577 5.7460 0.5168 35 1 4.7346 4.7670 -1.8984 36 1 5.8398 6.6952 -0.9157 37 1 4.2542 7.5038 -0.9155 38 1 5.3491 9.2676 -2.3890 39 1 6.8617 8.3305 -2.4364 40 1 6.0482 8.7855 -3.9531 41 1 6.3968 5.5245 -3.0909 42 1 7.5360 5.0725 -5.4889 43 1 6.1640 3.9590 -5.2744 44 1 6.4310 3.9172 -11.1602 45 1 1.3341 4.5114 0.0120 46 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754218898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:03 Heat of formation + Delta-G solvation = -53.709492 kcal Electronic energy + Delta-G solvation = -25698.101199 eV Core-core repulsion = 21907.041177 eV Total energy + Delta-G solvation = -3791.060022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41423 -39.44302 -38.19247 -36.72055 -34.37797 -32.40480 -31.69662 -31.34999 -30.45536 -28.50621 -27.92168 -26.19004 -25.45761 -23.84191 -22.93503 -21.62738 -21.17587 -20.24817 -18.45090 -17.87527 -16.78256 -16.52834 -16.31744 -16.03444 -15.74223 -15.29442 -15.20679 -14.78534 -14.67409 -14.51045 -14.16246 -14.01124 -13.78825 -13.33320 -13.20486 -12.95037 -12.78956 -12.60286 -12.49017 -12.34557 -12.11893 -11.94444 -11.82638 -11.48755 -11.28051 -11.05483 -11.04896 -10.99474 -10.93874 -10.72819 -9.77846 -9.32730 -9.25278 -9.05493 -8.87873 -8.71825 -8.35103 -8.19704 -6.46646 -6.19454 -3.89369 1.08238 1.14424 2.97880 3.06827 3.15935 3.23209 3.29913 3.34578 3.41871 3.74872 4.06077 4.22704 4.47198 4.56678 4.60706 4.69905 4.76453 4.82205 4.96273 5.03140 5.07671 5.13404 5.15698 5.18304 5.20591 5.27024 5.40507 5.42740 5.44807 5.45585 5.62229 5.70661 5.77305 5.92518 5.98480 6.08494 6.09751 6.16742 6.19261 6.35921 6.47959 6.68007 6.74443 7.09754 7.10492 7.62121 7.74166 8.37736 8.67956 9.26036 10.88031 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.002571 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.832638 B =10890.180204 C =13488.674823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.127 3.873 4 C -0.151 4.151 5 C -0.073 4.073 6 C -0.122 4.122 7 C 0.104 3.896 8 N -0.683 5.683 9 C 0.053 3.947 10 C 0.145 3.855 11 H 0.096 0.904 12 C -0.163 4.163 13 N -0.734 5.734 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.534 4.534 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.056 4.056 27 C -0.209 4.209 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.346 0.654 36 H 0.034 0.966 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.392 0.608 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.267 0.733 45 H 0.126 0.874 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 -1.283 27.289 28.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.170 4.170 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.025 4.025 8 N -0.316 5.316 9 C -0.077 4.077 10 C 0.040 3.960 11 H 0.114 0.886 12 C -0.222 4.222 13 N -0.389 5.389 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.074 4.074 27 C -0.228 4.228 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.144 0.856 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.991 0.111 26.001 27.512 hybrid contribution 2.396 -2.244 0.758 3.369 sum -6.595 -2.133 26.759 27.642 Atomic orbital electron populations 1.23064 0.78309 1.03985 1.01434 1.86071 1.21477 1.27023 1.88652 1.19073 0.92420 0.84177 0.96178 1.20402 0.91421 0.98675 1.06506 1.20854 0.99673 0.91160 0.97513 1.19650 0.93789 0.94495 1.04319 1.20803 0.98476 0.93247 0.89938 1.60441 1.53872 1.04573 1.12681 1.22293 0.97161 0.92127 0.96079 1.20928 0.96884 0.87227 0.91006 0.88614 1.22165 0.99948 0.96835 1.03245 1.46044 1.49959 1.35170 1.07708 1.20246 0.81329 0.84864 0.81412 1.90698 1.38298 1.43563 1.66343 1.23534 1.02381 0.99488 1.05032 1.85399 1.62143 1.44218 0.91571 1.22908 1.31864 1.18038 0.95408 0.90936 1.24994 0.95818 0.97098 0.95734 1.70032 1.38544 1.38513 1.03222 0.86122 0.79631 0.81004 0.78766 1.19629 1.20566 1.20600 1.20806 0.93894 0.96978 0.95754 1.21248 1.00068 0.92369 1.09067 0.92443 0.88229 0.92702 0.85184 0.85568 0.94457 0.90225 0.83486 0.94762 0.89611 0.91834 0.92724 0.91376 0.77455 0.89398 0.89305 0.92267 0.85618 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.23 10.50 -19.41 -0.20 -3.44 16 3 C 0.13 1.33 6.69 -39.21 -0.26 1.07 16 4 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 5 C -0.07 -0.67 9.69 -39.61 -0.38 -1.05 16 6 C -0.12 -1.12 5.39 -104.60 -0.56 -1.68 16 7 C 0.10 0.82 5.81 -4.97 -0.03 0.79 16 8 N -0.68 -6.46 6.48 -115.06 -0.75 -7.20 16 9 C 0.05 0.45 5.30 -3.82 -0.02 0.43 16 10 C 0.14 1.67 2.88 -67.93 -0.20 1.47 16 11 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 12 C -0.16 -1.74 9.48 37.16 0.35 -1.38 16 13 N -0.73 -9.57 4.36 -53.80 -0.23 -9.80 16 14 C 0.54 9.95 7.81 -10.98 -0.09 9.86 16 15 O -0.52 -11.72 15.53 5.55 0.09 -11.64 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.06 -0.52 9.69 -39.61 -0.38 -0.90 16 27 C -0.21 -1.96 9.04 -39.43 -0.36 -2.32 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 34 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.35 3.46 7.57 -39.29 -0.30 3.16 16 36 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.39 3.99 8.15 -40.82 -0.33 3.66 16 42 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -35.62 400.78 -9.66 -45.27 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.18 Total: 4.10 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.91 Total: -10.40 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.25 Total: -42.65 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.12 Total: -15.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.62 -9.66 -45.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754218898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.436 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds