Wall clock time and date at job start Tue Mar 31 2020 20:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 116.99705 * 2 1 4 4 C 1.38736 * 120.05853 * 179.97438 * 3 2 1 5 5 C 1.38140 * 119.94699 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05468 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.94240 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47178 * 89.99906 * 7 6 5 9 9 C 1.46898 * 110.99995 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47206 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.46427 * 65.00254 * 10 9 8 12 12 C 1.53001 * 109.47065 * 184.99822 * 10 9 8 13 13 N 1.46497 * 109.47036 * 304.99967 * 10 9 8 14 14 C 1.34777 * 119.99525 * 154.99621 * 13 10 9 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 10 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 10 17 17 S 1.80997 * 109.47151 * 180.27780 * 16 14 13 18 18 C 1.76196 * 100.00314 * 179.97438 * 17 16 14 19 19 H 1.08005 * 120.00018 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.00626 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99674 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00584 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46793 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47282 * 119.99523 * 22 20 18 25 25 H 1.48500 * 109.47237 * 240.00020 * 22 20 18 26 26 C 1.38265 * 120.11657 * 0.25111 * 6 5 4 27 27 C 1.38146 * 120.05180 * 359.45143 * 26 6 5 28 28 H 1.08996 * 109.47163 * 60.00299 * 1 2 3 29 29 H 1.09002 * 109.46866 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47290 * 299.99676 * 1 2 3 31 31 H 1.08007 * 120.02229 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.96999 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.47108 * 329.99866 * 7 6 5 34 34 H 1.08996 * 109.46976 * 209.99711 * 7 6 5 35 35 H 1.00901 * 111.00169 * 303.95605 * 8 7 6 36 36 H 1.08997 * 109.47306 * 59.99947 * 9 8 7 37 37 H 1.08994 * 109.46899 * 299.99961 * 9 8 7 38 38 H 1.09003 * 109.47371 * 300.00160 * 12 10 9 39 39 H 1.09002 * 109.46839 * 60.00194 * 12 10 9 40 40 H 1.08998 * 109.46617 * 180.02562 * 12 10 9 41 41 H 0.97000 * 120.00580 * 335.00367 * 13 10 9 42 42 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 43 43 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 44 44 H 0.97003 * 120.00297 * 179.97438 * 21 20 18 45 45 H 1.07996 * 119.97286 * 179.70808 * 26 6 5 46 46 H 1.08000 * 120.03283 * 180.24993 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5170 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0187 0.0028 8 7 4.2087 5.4559 -1.3818 9 6 4.8759 6.7641 -1.4198 10 6 5.0910 7.1848 -2.8751 11 1 4.1246 7.3399 -3.3550 12 6 5.8955 8.4856 -2.9164 13 7 5.8253 6.1338 -3.5839 14 6 5.7065 6.0134 -4.9210 15 8 4.9922 6.7753 -5.5375 16 6 6.4667 4.9361 -5.6509 17 16 6.1070 5.0381 -7.4218 18 6 7.0970 3.7056 -8.0124 19 1 7.6816 3.1187 -7.3194 20 6 7.1249 3.4095 -9.3682 21 7 6.4112 4.1238 -10.2127 22 14 8.1739 1.9964 -9.9943 23 1 8.8740 1.3557 -8.8520 24 1 7.3067 0.9966 -10.6677 25 1 9.1756 2.5139 -10.9608 26 6 1.9209 3.6048 0.0068 27 6 1.2914 2.3752 0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3800 0.0005 32 1 5.1344 2.5752 0.0011 33 1 4.9437 4.9380 0.5169 34 1 3.3577 5.7460 0.5168 35 1 4.7346 4.7670 -1.8984 36 1 5.8398 6.6952 -0.9157 37 1 4.2542 7.5038 -0.9155 38 1 5.3491 9.2676 -2.3890 39 1 6.8617 8.3305 -2.4364 40 1 6.0482 8.7855 -3.9531 41 1 6.3968 5.5245 -3.0909 42 1 7.5360 5.0725 -5.4889 43 1 6.1640 3.9590 -5.2744 44 1 6.4310 3.9172 -11.1602 45 1 1.3341 4.5114 0.0120 46 1 0.2128 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754218898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:02 Heat of formation + Delta-G solvation = -78.989628 kcal Electronic energy + Delta-G solvation = -25699.197428 eV Core-core repulsion = 21907.041177 eV Total energy + Delta-G solvation = -3792.156251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08973 -40.75727 -38.91525 -37.68557 -35.33448 -34.57847 -32.84219 -32.04384 -31.26267 -29.93819 -28.48479 -27.65478 -26.88246 -24.55452 -23.60400 -22.65204 -21.91179 -21.49122 -19.85872 -19.10810 -18.03047 -17.44705 -17.25832 -16.88036 -16.70848 -16.65997 -16.42961 -16.05211 -15.82419 -15.70000 -15.11724 -14.85586 -14.71173 -14.54117 -14.44017 -14.06420 -13.94504 -13.49721 -13.40487 -13.17794 -13.15161 -12.93737 -12.91212 -12.78154 -12.68112 -12.53812 -12.28265 -11.93807 -11.80051 -11.69270 -11.67937 -11.15420 -10.87871 -10.25663 -10.09089 -9.94355 -9.37600 -9.04238 -8.65420 -8.34279 -6.11842 0.39723 0.43583 1.28217 1.41452 1.48008 1.59090 1.67643 2.26712 2.33277 2.38662 2.72063 2.99850 3.31065 3.37647 3.82884 3.89078 3.93094 3.98403 4.06124 4.22754 4.25753 4.30433 4.36297 4.38833 4.43228 4.45608 4.51838 4.58355 4.68159 4.71493 4.76496 4.78913 4.80655 4.84150 5.10895 5.12064 5.29661 5.31891 5.40195 5.42473 5.58050 5.68003 5.83510 6.07718 6.20525 6.38767 6.44576 6.54363 7.07135 7.31074 8.75233 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008302 B = 0.002571 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.832638 B =10890.180204 C =13488.674823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.108 3.892 4 C -0.170 4.170 5 C -0.076 4.076 6 C -0.129 4.129 7 C 0.109 3.891 8 N -0.701 5.701 9 C 0.065 3.935 10 C 0.144 3.856 11 H 0.064 0.936 12 C -0.158 4.158 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.565 6.565 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.544 4.544 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.067 4.067 27 C -0.217 4.217 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.341 0.659 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.032 0.968 41 H 0.411 0.589 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.137 0.863 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -1.956 29.722 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.063 3.937 4 C -0.189 4.189 5 C -0.095 4.095 6 C -0.129 4.129 7 C -0.019 4.019 8 N -0.333 5.333 9 C -0.065 4.065 10 C 0.039 3.961 11 H 0.082 0.918 12 C -0.216 4.216 13 N -0.361 5.361 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.692 4.692 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.085 4.085 27 C -0.235 4.235 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.247 0.753 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.154 0.846 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.677 -0.566 28.508 29.529 hybrid contribution 1.927 -1.997 0.137 2.779 sum -5.750 -2.563 28.645 29.328 Atomic orbital electron populations 1.23304 0.76651 1.05438 1.02093 1.86037 1.23342 1.27209 1.88766 1.19326 0.92917 0.84655 0.96807 1.20652 0.91674 0.99432 1.07133 1.21102 1.00703 0.90780 0.96902 1.19882 0.93865 0.95257 1.03932 1.20806 0.99327 0.92577 0.89160 1.60429 1.54283 1.04815 1.13762 1.22220 0.98733 0.92036 0.93477 1.21064 0.95261 0.87251 0.92516 0.91810 1.22108 1.01173 0.96821 1.01528 1.45779 1.49205 1.35366 1.05743 1.19983 0.80738 0.83977 0.83011 1.90688 1.40536 1.45271 1.67802 1.23374 1.03884 1.01227 0.99574 1.85588 1.63258 1.45106 0.98586 1.23228 1.31839 1.18011 0.96097 0.89984 1.26138 0.97121 1.00093 0.95920 1.70195 1.40358 1.40615 1.03676 0.84902 0.77620 0.76995 0.78406 1.18001 1.19977 1.19893 1.21064 0.94424 0.97349 0.95703 1.21467 1.00943 0.92225 1.08885 0.92306 0.86481 0.91470 0.84871 0.83708 0.92742 0.89312 0.84042 0.92292 0.88041 0.89528 0.90747 0.94895 0.75253 0.87338 0.87484 0.92024 0.84554 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -6.86 10.50 -92.37 -0.97 -7.82 16 3 C 0.11 2.24 6.69 22.51 0.15 2.39 16 4 C -0.17 -3.34 9.99 22.37 0.22 -3.12 16 5 C -0.08 -1.27 9.69 22.25 0.22 -1.06 16 6 C -0.13 -2.12 5.39 -19.85 -0.11 -2.23 16 7 C 0.11 1.39 5.81 85.56 0.50 1.88 16 8 N -0.70 -11.33 6.48 -517.93 -3.36 -14.68 16 9 C 0.06 0.87 5.30 86.31 0.46 1.32 16 10 C 0.14 3.06 2.88 44.99 0.13 3.19 16 11 H 0.06 1.82 7.58 -2.38 -0.02 1.80 16 12 C -0.16 -3.05 9.48 71.98 0.68 -2.37 16 13 N -0.71 -17.17 4.36 -442.52 -1.93 -19.10 16 14 C 0.54 19.84 7.81 87.66 0.68 20.52 16 15 O -0.56 -26.53 15.53 -3.04 -0.05 -26.58 16 16 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.54 -31.37 9.50 67.95 0.65 -30.72 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 22 Si 1.00 44.05 29.55 68.60 2.03 46.07 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C -0.07 -1.16 9.69 22.25 0.22 -0.95 16 27 C -0.22 -3.94 9.04 22.37 0.20 -3.73 16 28 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.09 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.34 5.92 7.57 -89.69 -0.68 5.24 16 36 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.41 7.09 8.15 -92.71 -0.76 6.33 16 42 H 0.11 3.87 8.14 -2.39 -0.02 3.86 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.14 1.99 6.30 -2.91 -0.02 1.97 16 Total: -1.00 -80.85 400.78 0.42 -80.43 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.45 Total: 24.88 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 6.01 Total: -17.10 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -5.00 Total: -90.13 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.02 Total: -34.41 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -80.85 0.42 -80.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754218898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.445 kcal (2) G-P(sol) polarization free energy of solvation -80.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds