Wall clock time and date at job start Tue Mar 31 2020 20:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00402 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47243 * 90.00488 * 14 12 10 16 16 H 1.48502 * 109.46981 * 210.00344 * 14 12 10 17 17 H 1.48501 * 109.47148 * 329.99875 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 18 23 23 C 1.38221 * 119.59147 * 124.72523 * 22 21 19 24 24 C 1.38592 * 119.19222 * 179.77455 * 23 22 21 25 25 C 1.38888 * 118.39390 * 0.49161 * 24 23 22 26 26 F 1.35097 * 120.44171 * 179.77626 * 25 24 23 27 27 C 1.38417 * 119.11576 * 359.75140 * 25 24 23 28 28 N 1.31842 * 119.58445 * 305.00048 * 22 21 19 29 29 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 30 30 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 32 32 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 33 33 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 34 34 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 35 35 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 36 36 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 37 37 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 38 38 H 0.97003 * 120.00174 * 179.97438 * 13 12 10 39 39 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 40 40 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 41 41 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 42 42 H 1.08006 * 120.40941 * 0.02562 * 23 22 21 43 43 H 1.08004 * 120.80771 * 180.22055 * 24 23 22 44 44 H 1.07992 * 119.64180 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 7.7035 -3.4015 -5.2304 14 14 10.1877 -3.0061 -4.0711 15 1 10.5663 -4.2624 -3.3759 16 1 10.7716 -3.0005 -5.4365 17 1 10.7045 -1.8423 -3.3071 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8633 1.1597 2.4104 21 6 2.6489 -0.7287 3.5877 22 6 2.6992 0.2395 4.7415 23 6 2.0278 -0.0585 5.9124 24 6 2.0834 0.8356 6.9698 25 6 2.8086 2.0086 6.8054 26 9 2.8867 2.9112 7.8076 27 6 3.4507 2.2403 5.6013 28 7 3.3785 1.3628 4.6195 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7197 -1.2951 33 1 1.7516 -0.1582 -2.1369 34 1 3.7996 -1.2883 -0.3433 35 1 3.6094 -2.5199 -2.4295 36 1 3.7557 -0.9587 -3.2719 37 1 5.7754 -2.5730 -4.0320 38 1 8.2100 -3.8308 -5.9375 39 1 2.2491 -1.6317 1.1526 40 1 1.9760 -1.5506 3.8326 41 1 3.6481 -1.1213 3.3986 42 1 1.4699 -0.9788 6.0036 43 1 1.5716 0.6273 7.8978 44 1 4.0166 3.1498 5.4641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754232026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:48 Heat of formation + Delta-G solvation = -81.262076 kcal Electronic energy + Delta-G solvation = -27842.386837 eV Core-core repulsion = 23516.211620 eV Total energy + Delta-G solvation = -4326.175217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.27174 -40.71429 -39.55409 -38.29906 -36.70345 -34.25790 -33.63342 -33.12603 -32.79575 -31.27697 -31.06517 -28.11339 -27.60905 -25.04208 -24.30519 -23.41885 -23.00921 -21.33625 -20.47787 -19.26701 -18.02219 -17.91198 -17.74525 -17.16582 -16.82062 -16.14415 -16.05721 -15.86904 -15.46254 -15.20034 -14.58498 -14.49833 -14.41405 -14.22540 -14.03347 -13.82996 -13.56606 -13.38600 -13.24164 -13.08090 -12.66213 -12.62522 -12.47102 -12.13295 -11.91837 -11.70284 -11.61446 -11.46791 -11.07251 -10.97452 -10.39671 -10.26316 -10.22440 -9.96823 -9.74207 -9.51675 -9.17233 -9.10174 -8.47594 -8.09119 -7.96838 -6.42540 -3.83293 0.56023 0.79724 2.63205 2.97588 3.17348 3.26239 3.32601 3.40921 3.65967 3.89503 3.95347 4.04555 4.21392 4.27933 4.40567 4.49606 4.68511 4.85916 4.98468 4.99306 5.03202 5.17803 5.19847 5.22420 5.27302 5.41277 5.43283 5.49627 5.55231 5.58099 5.62599 5.75474 5.92685 5.96423 6.07774 6.24996 6.27341 6.44448 7.14594 7.40619 7.54637 7.60060 7.61520 8.05523 8.20805 8.60410 9.17241 9.53328 10.04838 10.75129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.002046 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.461385 B =13680.307820 C =15358.523803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.725 5.725 19 C 0.524 3.476 20 O -0.522 6.522 21 C -0.095 4.095 22 C 0.136 3.864 23 C -0.139 4.139 24 C -0.110 4.110 25 C 0.041 3.959 26 F -0.132 7.132 27 C 0.084 3.916 28 N -0.424 5.424 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.397 0.603 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 1.933 18.268 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.378 5.378 19 C 0.309 3.691 20 O -0.396 6.396 21 C -0.136 4.136 22 C -0.003 4.003 23 C -0.159 4.159 24 C -0.137 4.137 25 C 0.019 3.981 26 F -0.111 7.111 27 C -0.075 4.075 28 N -0.132 5.132 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.168 0.832 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.660 3.855 17.760 24.655 hybrid contribution 0.070 -1.766 0.555 1.853 sum -16.590 2.089 18.315 24.800 Atomic orbital electron populations 1.22143 0.95179 1.01946 1.02672 1.21009 0.93236 0.98577 0.83086 0.88422 1.22299 0.88841 0.98910 0.97865 1.60006 1.07473 1.57533 1.04933 1.21690 0.95151 0.96902 0.94507 1.19809 0.88083 0.84282 0.85345 1.90538 1.71094 1.51370 1.33546 1.41864 1.07412 1.50853 1.19915 1.19702 0.81515 1.34987 1.06619 0.87923 1.25265 1.00707 0.96804 0.95213 1.69612 1.36704 1.38571 1.09451 0.85855 0.82163 0.78845 0.77424 1.20439 1.20923 1.19379 1.45970 1.68147 1.13844 1.09791 1.20099 0.77597 0.87310 0.84055 1.90733 1.48776 1.15356 1.84765 1.20640 1.05151 0.96934 0.90842 1.20658 0.93503 0.92515 0.93578 1.21852 1.00283 1.00776 0.92947 1.21592 0.98582 0.92803 1.00686 1.18880 1.02082 0.89516 0.87582 1.91519 1.94818 1.65783 1.58982 1.22958 0.97699 0.99623 0.87255 1.67557 1.15576 1.01244 1.28783 0.91454 0.92598 0.92032 0.95042 0.89538 0.83247 0.93886 0.89488 0.77476 0.91885 0.76931 0.87153 0.86238 0.83724 0.83543 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.15 1.59 2.88 -67.94 -0.20 1.40 16 3 H 0.10 1.37 7.57 -51.93 -0.39 0.98 16 4 C 0.05 0.57 5.30 -3.83 -0.02 0.55 16 5 N -0.67 -10.31 6.12 -115.06 -0.70 -11.01 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.25 7.82 -10.99 -0.09 10.17 16 8 O -0.58 -15.75 15.78 5.54 0.09 -15.66 16 9 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 18 N -0.72 -7.26 4.36 -53.81 -0.23 -7.50 16 19 C 0.52 6.19 7.73 -10.98 -0.08 6.10 16 20 O -0.52 -8.36 14.99 5.56 0.08 -8.28 16 21 C -0.10 -0.80 6.10 -29.03 -0.18 -0.98 16 22 C 0.14 1.41 5.77 -82.59 -0.48 0.93 16 23 C -0.14 -1.05 9.71 -39.46 -0.38 -1.43 16 24 C -0.11 -0.85 10.16 -39.21 -0.40 -1.25 16 25 C 0.04 0.39 7.35 -39.28 -0.29 0.11 16 26 F -0.13 -1.30 17.28 2.25 0.04 -1.26 16 27 C 0.08 0.92 11.17 -17.47 -0.20 0.73 16 28 N -0.42 -5.49 9.21 -9.42 -0.09 -5.58 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.35 5.43 7.28 -39.29 -0.29 5.15 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.40 3.03 8.15 -40.82 -0.33 2.70 16 40 H 0.11 0.49 7.87 -51.93 -0.41 0.08 16 41 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.15 0.60 7.95 -52.48 -0.42 0.18 16 43 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -35.98 385.20 -7.49 -43.47 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.90 Total: 13.78 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.22 Total: 8.10 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.36 Total: -61.94 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.17 Total: -23.94 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.98 -7.49 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754232026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.789 kcal (2) G-P(sol) polarization free energy of solvation -35.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds