Wall clock time and date at job start Tue Mar 31 2020 20:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00402 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47243 * 90.00488 * 14 12 10 16 16 H 1.48502 * 109.46981 * 210.00344 * 14 12 10 17 17 H 1.48501 * 109.47148 * 329.99875 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 18 23 23 C 1.38221 * 119.59147 * 124.72523 * 22 21 19 24 24 C 1.38592 * 119.19222 * 179.77455 * 23 22 21 25 25 C 1.38888 * 118.39390 * 0.49161 * 24 23 22 26 26 F 1.35097 * 120.44171 * 179.77626 * 25 24 23 27 27 C 1.38417 * 119.11576 * 359.75140 * 25 24 23 28 28 N 1.31842 * 119.58445 * 305.00048 * 22 21 19 29 29 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 30 30 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 32 32 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 33 33 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 34 34 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 35 35 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 36 36 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 37 37 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 38 38 H 0.97003 * 120.00174 * 179.97438 * 13 12 10 39 39 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 40 40 H 1.09005 * 109.47403 * 300.00056 * 21 19 18 41 41 H 1.09002 * 109.47422 * 60.00295 * 21 19 18 42 42 H 1.08006 * 120.40941 * 0.02562 * 23 22 21 43 43 H 1.08004 * 120.80771 * 180.22055 * 24 23 22 44 44 H 1.07992 * 119.64180 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 7.7035 -3.4015 -5.2304 14 14 10.1877 -3.0061 -4.0711 15 1 10.5663 -4.2624 -3.3759 16 1 10.7716 -3.0005 -5.4365 17 1 10.7045 -1.8423 -3.3071 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8633 1.1597 2.4104 21 6 2.6489 -0.7287 3.5877 22 6 2.6992 0.2395 4.7415 23 6 2.0278 -0.0585 5.9124 24 6 2.0834 0.8356 6.9698 25 6 2.8086 2.0086 6.8054 26 9 2.8867 2.9112 7.8076 27 6 3.4507 2.2403 5.6013 28 7 3.3785 1.3628 4.6195 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7197 -1.2951 33 1 1.7516 -0.1582 -2.1369 34 1 3.7996 -1.2883 -0.3433 35 1 3.6094 -2.5199 -2.4295 36 1 3.7557 -0.9587 -3.2719 37 1 5.7754 -2.5730 -4.0320 38 1 8.2100 -3.8308 -5.9375 39 1 2.2491 -1.6317 1.1526 40 1 1.9760 -1.5506 3.8326 41 1 3.6481 -1.1213 3.3986 42 1 1.4699 -0.9788 6.0036 43 1 1.5716 0.6273 7.8978 44 1 4.0166 3.1498 5.4641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754232026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:47 Heat of formation + Delta-G solvation = -109.738168 kcal Electronic energy + Delta-G solvation = -27843.621653 eV Core-core repulsion = 23516.211620 eV Total energy + Delta-G solvation = -4327.410033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.01487 -41.47004 -40.45976 -40.05115 -37.80408 -36.01436 -35.02246 -33.88000 -33.47509 -33.24477 -31.98346 -28.97789 -28.80429 -26.68769 -25.00581 -24.67387 -23.84980 -22.17112 -21.36287 -21.05462 -19.90405 -18.73993 -18.53550 -18.10875 -17.76604 -17.42969 -16.93789 -16.76706 -16.71412 -16.33288 -16.17011 -15.92547 -15.41488 -15.15344 -15.09621 -14.93476 -14.76378 -14.33569 -14.14752 -14.00257 -13.91889 -13.55767 -13.39890 -13.18248 -13.07663 -13.00819 -12.83010 -12.77761 -12.57680 -12.40911 -12.12691 -11.90734 -11.50090 -10.94889 -10.85896 -10.49447 -10.35220 -10.02066 -10.00495 -9.84334 -9.28749 -8.46240 -5.94603 -0.14318 0.14776 1.38026 1.42138 1.54656 1.76296 2.06563 2.20433 2.29597 2.68265 2.92028 2.97299 3.21270 3.28760 3.52564 3.62031 3.77669 3.85476 3.90506 4.04162 4.23430 4.29508 4.34400 4.41500 4.48831 4.52498 4.61834 4.64081 4.70607 4.77126 4.78969 4.84575 4.87415 4.96227 5.13328 5.30142 5.41601 5.60901 5.61289 5.88954 6.10938 6.42264 6.61230 6.62500 6.90511 7.13735 7.38102 7.57599 8.13412 8.70957 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.002046 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.461385 B =13680.307820 C =15358.523803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.058 0.942 4 C 0.057 3.943 5 N -0.689 5.689 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.276 1.276 18 N -0.716 5.716 19 C 0.517 3.483 20 O -0.573 6.573 21 C -0.090 4.090 22 C 0.113 3.887 23 C -0.125 4.125 24 C -0.105 4.105 25 C 0.031 3.969 26 F -0.137 7.137 27 C 0.059 3.941 28 N -0.470 5.470 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.344 0.656 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.411 0.589 40 H 0.159 0.841 41 H 0.123 0.877 42 H 0.189 0.811 43 H 0.179 0.821 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 -0.467 18.519 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.072 4.072 5 N -0.322 5.322 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.511 6.511 9 N -0.210 5.210 10 C -0.462 4.462 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.201 1.201 18 N -0.369 5.369 19 C 0.304 3.696 20 O -0.451 6.451 21 C -0.130 4.130 22 C -0.026 4.026 23 C -0.144 4.144 24 C -0.131 4.131 25 C 0.010 3.990 26 F -0.115 7.115 27 C -0.099 4.099 28 N -0.179 5.179 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.247 0.753 40 H 0.176 0.824 41 H 0.141 0.859 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.375 1.417 17.986 25.751 hybrid contribution 0.548 -1.000 0.488 1.240 sum -17.827 0.417 18.473 25.676 Atomic orbital electron populations 1.22037 0.93166 1.03237 1.02382 1.20899 0.94657 0.96634 0.83555 0.92395 1.22344 0.86122 1.00623 0.98075 1.59967 1.10352 1.57710 1.04213 1.21542 0.90076 0.99210 0.95802 1.20974 0.90813 0.82102 0.83811 1.90508 1.72887 1.52671 1.35064 1.41927 1.06800 1.51601 1.20686 1.19632 0.83157 1.36737 1.06722 0.90540 1.26011 1.04786 0.95899 0.94561 1.69664 1.38208 1.38415 1.09687 0.84954 0.77005 0.78706 0.77836 1.19432 1.19574 1.20084 1.45916 1.67389 1.14427 1.09138 1.20758 0.76724 0.86890 0.85261 1.90712 1.51125 1.17636 1.85634 1.20772 1.06280 0.97327 0.88622 1.21145 0.93856 0.92238 0.95313 1.22278 0.98901 1.01890 0.91361 1.22015 0.97516 0.91596 1.02018 1.18989 1.02607 0.90366 0.87050 1.91503 1.94925 1.66158 1.58955 1.23024 0.98912 0.99940 0.88040 1.67490 1.17488 1.02841 1.30037 0.90444 0.90374 0.93679 0.91930 0.88763 0.83608 0.90713 0.87840 0.76886 0.91304 0.75271 0.82377 0.85902 0.79401 0.80335 0.81654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.48 71.98 0.68 -1.71 16 2 C 0.15 3.10 2.88 44.99 0.13 3.23 16 3 H 0.06 1.70 7.57 -2.38 -0.02 1.68 16 4 C 0.06 1.14 5.30 86.30 0.46 1.59 16 5 N -0.69 -20.40 6.12 -517.95 -3.17 -23.57 16 6 C 0.07 2.11 6.17 85.56 0.53 2.64 16 7 C 0.44 20.36 7.82 87.66 0.69 21.04 16 8 O -0.62 -34.65 15.78 -3.08 -0.05 -34.70 16 9 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 14 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 N -0.72 -13.51 4.36 -442.54 -1.93 -15.44 16 19 C 0.52 12.07 7.73 87.65 0.68 12.75 16 20 O -0.57 -19.15 14.99 -3.01 -0.05 -19.20 16 21 C -0.09 -1.37 6.10 29.10 0.18 -1.20 16 22 C 0.11 2.25 5.77 42.56 0.25 2.50 16 23 C -0.13 -1.56 9.71 22.35 0.22 -1.34 16 24 C -0.11 -1.42 10.16 22.51 0.23 -1.19 16 25 C 0.03 0.61 7.35 22.47 0.17 0.77 16 26 F -0.14 -2.71 17.28 44.97 0.78 -1.94 16 27 C 0.06 1.41 11.17 84.73 0.95 2.35 16 28 N -0.47 -12.81 9.21 -183.72 -1.69 -14.50 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.34 10.45 7.28 -89.69 -0.65 9.79 16 35 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 38 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.41 5.36 8.15 -92.71 -0.76 4.60 16 40 H 0.16 0.76 7.87 -2.38 -0.02 0.74 16 41 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.19 0.61 7.95 -2.91 -0.02 0.59 16 43 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -82.72 385.20 -0.07 -82.79 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -1.07 Total: 37.81 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 6.42 Total: 23.20 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -8.13 Total: -132.86 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.09 Total: -53.90 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -82.72 -0.07 -82.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754232026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.948 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds