Wall clock time and date at job start Tue Mar 31 2020 20:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46999 * 2 1 4 4 C 1.50701 * 109.47566 * 239.99722 * 2 1 3 5 5 O 1.21281 * 119.99627 * 334.22779 * 4 2 1 6 6 N 1.34773 * 119.99949 * 154.22130 * 4 2 1 7 7 C 1.46924 * 120.63363 * 5.04077 * 6 4 2 8 8 C 1.53623 * 108.54524 * 126.36222 * 7 6 4 9 9 C 1.53044 * 109.24070 * 54.85803 * 8 7 6 10 10 O 1.42896 * 109.45893 * 58.53153 * 9 8 7 11 11 C 1.53003 * 109.46162 * 178.48935 * 9 8 7 12 12 N 1.46500 * 109.47352 * 305.06882 * 11 9 8 13 13 C 1.36934 * 120.00174 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99773 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99817 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00050 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 90.00208 * 17 15 13 19 19 H 1.48501 * 109.46724 * 209.99850 * 17 15 13 20 20 H 1.48500 * 109.47076 * 329.99605 * 17 15 13 21 21 C 1.53038 * 109.53867 * 298.51116 * 9 8 7 22 22 C 1.46923 * 120.63069 * 185.31375 * 6 4 2 23 23 C 1.50705 * 109.47084 * 119.99546 * 2 1 3 24 24 C 1.38420 * 122.54145 * 240.00351 * 23 2 1 25 25 C 1.33389 * 114.92291 * 179.72885 * 24 23 2 26 26 S 1.75892 * 109.58962 * 0.27045 * 25 24 23 27 27 C 1.33390 * 122.53439 * 60.25549 * 23 2 1 28 28 H 1.09002 * 109.46751 * 55.12130 * 1 2 3 29 29 H 1.08998 * 109.46713 * 175.11575 * 1 2 3 30 30 H 1.08991 * 109.47468 * 295.12428 * 1 2 3 31 31 H 1.09001 * 109.58988 * 246.19860 * 7 6 4 32 32 H 1.09001 * 109.58509 * 6.62397 * 7 6 4 33 33 H 1.08999 * 109.63617 * 294.86980 * 8 7 6 34 34 H 1.09004 * 109.43472 * 174.72651 * 8 7 6 35 35 H 0.96701 * 114.00682 * 59.93380 * 10 9 8 36 36 H 1.08999 * 109.47066 * 65.06666 * 11 9 8 37 37 H 1.08993 * 109.47324 * 185.06580 * 11 9 8 38 38 H 0.97009 * 119.99674 * 0.02562 * 12 11 9 39 39 H 0.96996 * 120.00221 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.49662 * 301.41686 * 21 9 8 41 41 H 1.08999 * 109.50009 * 181.31847 * 21 9 8 42 42 H 1.09003 * 109.58899 * 353.37839 * 22 6 4 43 43 H 1.09000 * 109.58955 * 113.80250 * 22 6 4 44 44 H 1.08002 * 122.53788 * 359.97438 * 24 23 2 45 45 H 1.07997 * 125.20643 * 180.24850 * 25 24 23 46 46 H 1.07999 * 125.20434 * 359.97438 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3428 -1.5495 -1.7702 6 7 3.2480 -0.4133 -1.7309 7 6 4.1397 0.5190 -1.0278 8 6 5.4960 -0.1698 -0.8137 9 6 6.0329 -0.6565 -2.1617 10 8 6.1629 0.4541 -3.0514 11 6 7.4014 -1.3101 -1.9595 12 7 8.2954 -0.3707 -1.2779 13 6 9.5822 -0.7380 -0.9877 14 1 9.9380 -1.7204 -1.2609 15 6 10.4293 0.1524 -0.3423 16 7 11.6664 -0.2004 -0.0638 17 14 9.8136 1.8514 0.1308 18 1 9.2296 1.8040 1.4953 19 1 10.9462 2.8117 0.1102 20 1 8.7758 2.2891 -0.8370 21 6 5.0633 -1.6783 -2.7600 22 6 3.7043 -1.0109 -2.9932 23 6 2.0323 -0.7103 1.2306 24 6 2.8305 -0.0888 2.1753 25 6 3.1832 -0.8577 3.2067 26 16 2.4954 -2.4642 3.0070 27 6 1.7454 -1.9871 1.4893 28 1 -0.3633 0.5877 -0.8431 29 1 -0.3633 -1.0239 -0.0875 30 1 -0.3634 0.4363 0.9303 31 1 4.2744 1.4188 -1.6281 32 1 3.7057 0.7823 -0.0632 33 1 5.3732 -1.0200 -0.1427 34 1 6.1985 0.5403 -0.3773 35 1 6.7638 1.1428 -2.7358 36 1 7.2887 -2.2091 -1.3535 37 1 7.8240 -1.5758 -2.9284 38 1 7.9754 0.5114 -1.0315 39 1 12.2583 0.4216 0.3874 40 1 4.9446 -2.5142 -2.0706 41 1 5.4577 -2.0419 -3.7089 42 1 2.9830 -1.7574 -3.3259 43 1 3.8042 -0.2334 -3.7505 44 1 3.1408 0.9418 2.0863 45 1 3.7974 -0.5423 4.0371 46 1 1.1412 -2.6283 0.8647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755152859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:04 Heat of formation + Delta-G solvation = -35.102659 kcal Electronic energy + Delta-G solvation = -28437.650329 eV Core-core repulsion = 24647.397160 eV Total energy + Delta-G solvation = -3790.253169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79281 -39.05769 -37.92098 -35.65625 -34.21808 -33.30509 -31.99156 -31.26659 -30.62907 -29.02158 -27.22819 -25.60116 -24.11946 -23.48187 -22.78642 -21.43184 -20.36932 -19.47724 -18.46325 -18.12515 -17.94369 -17.38446 -16.08495 -15.98178 -15.49162 -15.01671 -14.70910 -14.64096 -14.35122 -14.11744 -13.98112 -13.54903 -13.27647 -13.20991 -13.10864 -12.87333 -12.63000 -12.58170 -12.49237 -12.32703 -11.98051 -11.87386 -11.76268 -11.50032 -11.41207 -11.17925 -11.15525 -10.96499 -10.88741 -10.34999 -10.26560 -9.90391 -9.66507 -9.56056 -9.01233 -8.98820 -8.64553 -8.55716 -7.35236 -5.85171 -3.22241 0.80851 1.45968 1.78837 2.33603 2.61639 2.93759 3.23478 3.27625 3.36191 4.32290 4.39513 4.48565 4.52670 4.67390 4.72461 4.83050 4.88077 4.99241 5.03884 5.07405 5.13959 5.29722 5.40395 5.41387 5.44436 5.49373 5.54092 5.57499 5.58199 5.70120 5.82883 5.84363 5.88547 5.94352 5.99460 6.13188 6.17413 6.21536 6.24096 6.47707 6.53581 6.58297 7.33438 7.83870 7.91997 8.07257 8.32475 9.09529 9.81369 9.99380 11.33209 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.003877 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.035308 B = 7220.024582 C = 8481.939598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 H 0.099 0.901 4 C 0.525 3.475 5 O -0.544 6.544 6 N -0.603 5.603 7 C 0.109 3.891 8 C -0.155 4.155 9 C 0.126 3.874 10 O -0.559 6.559 11 C 0.133 3.867 12 N -0.753 5.753 13 C -0.246 4.246 14 H 0.091 0.909 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.115 4.115 22 C 0.117 3.883 23 C -0.098 4.098 24 C -0.130 4.130 25 C -0.206 4.206 26 S 0.103 5.897 27 C -0.197 4.197 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.378 0.622 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.357 0.643 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.166 0.834 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.068 1.453 2.959 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 H 0.117 0.883 4 C 0.313 3.687 5 O -0.422 6.422 6 N -0.336 5.336 7 C -0.014 4.014 8 C -0.194 4.194 9 C 0.085 3.915 10 O -0.365 6.365 11 C 0.006 3.994 12 N -0.400 5.400 13 C -0.376 4.376 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.579 5.579 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.154 4.154 22 C -0.005 4.005 23 C -0.110 4.110 24 C -0.161 4.161 25 C -0.342 4.342 26 S 0.367 5.633 27 C -0.332 4.332 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.226 0.774 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.191 0.809 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.159 0.841 45 H 0.184 0.816 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.576 -0.846 3.202 23.808 hybrid contribution 0.470 2.901 0.066 2.939 sum -23.106 2.055 3.268 23.427 Atomic orbital electron populations 1.21661 0.91614 1.03514 1.01983 1.20033 0.98015 0.99463 0.89946 0.88304 1.20437 0.80897 0.82523 0.84887 1.90656 1.56675 1.33333 1.61515 1.48087 1.15702 1.45673 1.24088 1.21885 0.90180 0.92257 0.97079 1.22588 0.96026 1.02217 0.98573 1.21375 0.94874 0.87067 0.88166 1.86410 1.69246 1.32407 1.48457 1.21301 0.88331 0.93234 0.96555 1.42683 1.11432 1.14191 1.71680 1.19040 0.86018 1.00805 1.31701 0.89162 1.24680 0.95684 0.97891 1.00733 1.69695 1.05581 1.35918 1.46745 0.86575 0.77888 0.85737 0.78363 1.21036 1.21561 1.20542 1.21828 0.93983 0.97121 1.02455 1.21537 0.95428 0.98362 0.85142 1.18458 1.01418 0.94021 0.97150 1.20044 1.00266 1.01516 0.94238 1.25615 1.07526 0.96748 1.04279 1.84360 1.47287 1.13031 1.18617 1.25534 1.07206 0.99359 1.01133 0.92056 0.91195 0.91708 0.90761 0.89809 0.90298 0.90043 0.77393 0.94776 0.94432 0.80949 0.92952 0.90317 0.89813 0.89281 0.90623 0.84063 0.81611 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.61 37.16 0.32 -0.84 16 2 C -0.05 -0.50 2.15 -92.92 -0.20 -0.70 16 3 H 0.10 0.80 6.60 -51.93 -0.34 0.46 16 4 C 0.52 6.63 6.49 -10.99 -0.07 6.56 16 5 O -0.54 -8.38 15.42 5.56 0.09 -8.29 16 6 N -0.60 -7.37 2.97 -172.51 -0.51 -7.88 16 7 C 0.11 1.22 5.92 -3.49 -0.02 1.20 16 8 C -0.16 -2.10 4.89 -26.39 -0.13 -2.23 16 9 C 0.13 1.85 0.71 -90.58 -0.06 1.79 16 10 O -0.56 -8.30 11.70 -35.23 -0.41 -8.72 16 11 C 0.13 2.47 5.43 -4.04 -0.02 2.45 16 12 N -0.75 -16.68 4.87 -59.91 -0.29 -16.97 16 13 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 16 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 17 Si 0.88 20.93 27.74 -169.99 -4.71 16.22 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.28 -5.97 6.52 56.52 0.37 -5.60 16 21 C -0.12 -1.51 5.11 -26.61 -0.14 -1.65 16 22 C 0.12 1.48 6.20 -3.71 -0.02 1.45 16 23 C -0.10 -0.99 4.35 -106.25 -0.46 -1.45 16 24 C -0.13 -1.23 8.94 -41.21 -0.37 -1.60 16 25 C -0.21 -1.95 11.23 29.04 0.33 -1.63 16 26 S 0.10 1.01 23.34 -107.50 -2.51 -1.50 16 27 C -0.20 -2.09 10.21 29.04 0.30 -1.79 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 32 H 0.08 0.80 4.20 -51.93 -0.22 0.58 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.17 6.53 -51.93 -0.34 0.84 16 35 H 0.38 5.42 8.19 45.56 0.37 5.79 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.36 7.44 3.41 -40.82 -0.14 7.30 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 43 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 44 H 0.14 1.08 7.76 -52.49 -0.41 0.68 16 45 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.17 1.77 8.05 -52.49 -0.42 1.35 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -32.23 373.23 -8.80 -41.03 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.03 Total: 13.63 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.81 Total: -5.25 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.03 Total: -52.74 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.33 Total: -17.01 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.23 -8.80 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755152859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.928 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds