Wall clock time and date at job start Tue Mar 31 2020 20:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46999 * 2 1 4 4 C 1.50701 * 109.47566 * 239.99722 * 2 1 3 5 5 O 1.21281 * 119.99627 * 334.22779 * 4 2 1 6 6 N 1.34773 * 119.99949 * 154.22130 * 4 2 1 7 7 C 1.46924 * 120.63363 * 5.04077 * 6 4 2 8 8 C 1.53623 * 108.54524 * 126.36222 * 7 6 4 9 9 C 1.53044 * 109.24070 * 54.85803 * 8 7 6 10 10 O 1.42896 * 109.45893 * 58.53153 * 9 8 7 11 11 C 1.53003 * 109.46162 * 178.48935 * 9 8 7 12 12 N 1.46500 * 109.47352 * 305.06882 * 11 9 8 13 13 C 1.36934 * 120.00174 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99889 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99773 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99817 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00050 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47273 * 90.00208 * 17 15 13 19 19 H 1.48501 * 109.46724 * 209.99850 * 17 15 13 20 20 H 1.48500 * 109.47076 * 329.99605 * 17 15 13 21 21 C 1.53038 * 109.53867 * 298.51116 * 9 8 7 22 22 C 1.46923 * 120.63069 * 185.31375 * 6 4 2 23 23 C 1.50705 * 109.47084 * 119.99546 * 2 1 3 24 24 C 1.38420 * 122.54145 * 240.00351 * 23 2 1 25 25 C 1.33389 * 114.92291 * 179.72885 * 24 23 2 26 26 S 1.75892 * 109.58962 * 0.27045 * 25 24 23 27 27 C 1.33390 * 122.53439 * 60.25549 * 23 2 1 28 28 H 1.09002 * 109.46751 * 55.12130 * 1 2 3 29 29 H 1.08998 * 109.46713 * 175.11575 * 1 2 3 30 30 H 1.08991 * 109.47468 * 295.12428 * 1 2 3 31 31 H 1.09001 * 109.58988 * 246.19860 * 7 6 4 32 32 H 1.09001 * 109.58509 * 6.62397 * 7 6 4 33 33 H 1.08999 * 109.63617 * 294.86980 * 8 7 6 34 34 H 1.09004 * 109.43472 * 174.72651 * 8 7 6 35 35 H 0.96701 * 114.00682 * 59.93380 * 10 9 8 36 36 H 1.08999 * 109.47066 * 65.06666 * 11 9 8 37 37 H 1.08993 * 109.47324 * 185.06580 * 11 9 8 38 38 H 0.97009 * 119.99674 * 0.02562 * 12 11 9 39 39 H 0.96996 * 120.00221 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.49662 * 301.41686 * 21 9 8 41 41 H 1.08999 * 109.50009 * 181.31847 * 21 9 8 42 42 H 1.09003 * 109.58899 * 353.37839 * 22 6 4 43 43 H 1.09000 * 109.58955 * 113.80250 * 22 6 4 44 44 H 1.08002 * 122.53788 * 359.97438 * 24 23 2 45 45 H 1.07997 * 125.20643 * 180.24850 * 25 24 23 46 46 H 1.07999 * 125.20434 * 359.97438 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3428 -1.5495 -1.7702 6 7 3.2480 -0.4133 -1.7309 7 6 4.1397 0.5190 -1.0278 8 6 5.4960 -0.1698 -0.8137 9 6 6.0329 -0.6565 -2.1617 10 8 6.1629 0.4541 -3.0514 11 6 7.4014 -1.3101 -1.9595 12 7 8.2954 -0.3707 -1.2779 13 6 9.5822 -0.7380 -0.9877 14 1 9.9380 -1.7204 -1.2609 15 6 10.4293 0.1524 -0.3423 16 7 11.6664 -0.2004 -0.0638 17 14 9.8136 1.8514 0.1308 18 1 9.2296 1.8040 1.4953 19 1 10.9462 2.8117 0.1102 20 1 8.7758 2.2891 -0.8370 21 6 5.0633 -1.6783 -2.7600 22 6 3.7043 -1.0109 -2.9932 23 6 2.0323 -0.7103 1.2306 24 6 2.8305 -0.0888 2.1753 25 6 3.1832 -0.8577 3.2067 26 16 2.4954 -2.4642 3.0070 27 6 1.7454 -1.9871 1.4893 28 1 -0.3633 0.5877 -0.8431 29 1 -0.3633 -1.0239 -0.0875 30 1 -0.3634 0.4363 0.9303 31 1 4.2744 1.4188 -1.6281 32 1 3.7057 0.7823 -0.0632 33 1 5.3732 -1.0200 -0.1427 34 1 6.1985 0.5403 -0.3773 35 1 6.7638 1.1428 -2.7358 36 1 7.2887 -2.2091 -1.3535 37 1 7.8240 -1.5758 -2.9284 38 1 7.9754 0.5114 -1.0315 39 1 12.2583 0.4216 0.3874 40 1 4.9446 -2.5142 -2.0706 41 1 5.4577 -2.0419 -3.7089 42 1 2.9830 -1.7574 -3.3259 43 1 3.8042 -0.2334 -3.7505 44 1 3.1408 0.9418 2.0863 45 1 3.7974 -0.5423 4.0371 46 1 1.1412 -2.6283 0.8647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755152859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:03 Heat of formation + Delta-G solvation = -56.948863 kcal Electronic energy + Delta-G solvation = -28438.597652 eV Core-core repulsion = 24647.397160 eV Total energy + Delta-G solvation = -3791.200492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75826 -40.14459 -38.80094 -36.89400 -35.87607 -34.11450 -33.62040 -32.53767 -31.92715 -29.75372 -28.66245 -26.50634 -25.41602 -24.53044 -24.02910 -22.75576 -21.47657 -20.38908 -20.00342 -19.30329 -18.76505 -18.31086 -17.29780 -16.99164 -16.71457 -16.38194 -16.10531 -15.80961 -15.57940 -15.04996 -14.94852 -14.79915 -14.53801 -14.51487 -14.20438 -13.94415 -13.68195 -13.56780 -13.51196 -13.35946 -13.24090 -12.93110 -12.83153 -12.75201 -12.60229 -12.32135 -12.24290 -12.17505 -12.10074 -11.87652 -11.61753 -11.39583 -11.01255 -10.94496 -10.73094 -9.74055 -9.64197 -9.34984 -9.33318 -8.03003 -5.39189 0.06241 0.71495 1.06267 1.36337 1.43966 1.49524 1.51217 1.76606 2.02743 2.48937 3.19101 3.32055 3.43298 3.47774 3.69274 3.79356 3.83111 3.94129 3.99691 4.08893 4.17735 4.24626 4.33153 4.43516 4.50224 4.55804 4.67497 4.70287 4.72427 4.80756 4.83198 4.88966 4.90147 4.96179 5.02761 5.09665 5.13367 5.25639 5.28824 5.41212 5.48510 5.53687 5.73209 6.18352 6.39330 6.71811 7.05493 7.11900 7.76594 7.98733 9.18545 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011796 B = 0.003877 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.035308 B = 7220.024582 C = 8481.939598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.046 4.046 3 H 0.125 0.875 4 C 0.521 3.479 5 O -0.577 6.577 6 N -0.604 5.604 7 C 0.113 3.887 8 C -0.152 4.152 9 C 0.138 3.862 10 O -0.558 6.558 11 C 0.132 3.868 12 N -0.747 5.747 13 C -0.241 4.241 14 H 0.048 0.952 15 C -0.063 4.063 16 N -0.986 5.986 17 Si 0.957 3.043 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.238 1.238 21 C -0.112 4.112 22 C 0.122 3.878 23 C -0.096 4.096 24 C -0.134 4.134 25 C -0.210 4.210 26 S 0.092 5.908 27 C -0.214 4.214 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.382 0.618 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.368 0.632 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.166 0.834 45 H 0.183 0.817 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.016 4.306 3.520 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 H 0.143 0.857 4 C 0.310 3.690 5 O -0.457 6.457 6 N -0.335 5.335 7 C -0.009 4.009 8 C -0.190 4.190 9 C 0.097 3.903 10 O -0.365 6.365 11 C 0.005 3.995 12 N -0.395 5.395 13 C -0.372 4.372 14 H 0.066 0.934 15 C -0.255 4.255 16 N -0.636 5.636 17 Si 0.782 3.218 18 H -0.199 1.199 19 H -0.226 1.226 20 H -0.161 1.161 21 C -0.151 4.151 22 C 0.000 4.000 23 C -0.110 4.110 24 C -0.164 4.164 25 C -0.345 4.345 26 S 0.357 5.643 27 C -0.350 4.350 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.184 0.816 45 H 0.200 0.800 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.572 2.006 3.745 25.923 hybrid contribution 1.123 1.855 -0.153 2.174 sum -24.450 3.861 3.592 25.012 Atomic orbital electron populations 1.21648 0.91088 1.02689 1.03086 1.20091 0.98467 1.00231 0.88202 0.85711 1.20966 0.80612 0.82075 0.85332 1.90645 1.57604 1.34825 1.62661 1.48170 1.15841 1.45670 1.23868 1.21967 0.88571 0.91914 0.98433 1.22523 0.97394 1.01974 0.97156 1.21218 0.92565 0.87206 0.89354 1.86422 1.69241 1.32281 1.48531 1.21418 0.90054 0.92884 0.95156 1.42515 1.09948 1.15244 1.71769 1.18965 0.88186 0.99205 1.30853 0.93352 1.25605 0.95708 1.03042 1.01117 1.69908 1.07502 1.37808 1.48334 0.85404 0.78034 0.79109 0.79227 1.19903 1.22601 1.16138 1.21793 0.94100 0.96679 1.02482 1.21438 0.94575 0.98327 0.85664 1.18585 1.01272 0.93754 0.97344 1.20285 0.99804 1.02594 0.93718 1.25911 1.07507 0.96139 1.04946 1.84395 1.47490 1.14040 1.18409 1.25574 1.07913 0.99913 1.01588 0.91611 0.92948 0.89983 0.89333 0.87570 0.91297 0.90207 0.76893 0.95531 0.95752 0.79671 0.93271 0.90682 0.89475 0.89929 0.90167 0.81635 0.79960 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.61 71.98 0.62 -1.38 16 2 C -0.05 -0.78 2.15 -12.29 -0.03 -0.80 16 3 H 0.13 1.45 6.60 -2.38 -0.02 1.43 16 4 C 0.52 12.14 6.49 87.66 0.57 12.71 16 5 O -0.58 -17.37 15.42 -3.03 -0.05 -17.42 16 6 N -0.60 -13.21 2.97 -818.08 -2.43 -15.64 16 7 C 0.11 2.09 5.92 86.51 0.51 2.61 16 8 C -0.15 -3.65 4.89 30.82 0.15 -3.50 16 9 C 0.14 3.77 0.71 -10.76 -0.01 3.76 16 10 O -0.56 -14.92 11.70 -148.98 -1.74 -16.67 16 11 C 0.13 4.81 5.43 86.38 0.47 5.28 16 12 N -0.75 -32.20 4.87 -343.46 -1.67 -33.88 16 13 C -0.24 -13.39 10.47 84.03 0.88 -12.51 16 14 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 15 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 16 N -0.99 -62.05 13.97 21.65 0.30 -61.74 16 17 Si 0.96 41.87 27.74 68.60 1.90 43.77 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 21 C -0.11 -2.78 5.11 30.67 0.16 -2.63 16 22 C 0.12 2.86 6.20 86.36 0.54 3.39 16 23 C -0.10 -1.72 4.35 -20.92 -0.09 -1.81 16 24 C -0.13 -2.07 8.94 21.22 0.19 -1.89 16 25 C -0.21 -3.43 11.23 66.72 0.75 -2.68 16 26 S 0.09 1.72 23.34 -56.49 -1.32 0.40 16 27 C -0.21 -4.36 10.21 66.72 0.68 -3.68 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 1.01 7.52 -2.39 -0.02 0.99 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 32 H 0.11 1.51 4.20 -2.39 -0.01 1.50 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.98 6.53 -2.38 -0.02 1.96 16 35 H 0.38 9.53 8.19 -74.06 -0.61 8.93 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.37 14.22 3.41 -92.70 -0.32 13.90 16 39 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 2.07 7.00 -2.39 -0.02 2.05 16 43 H 0.08 1.82 7.81 -2.39 -0.02 1.81 16 44 H 0.17 1.71 7.76 -2.91 -0.02 1.69 16 45 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 46 H 0.16 3.40 8.05 -2.91 -0.02 3.38 16 Total: -1.00 -71.30 373.23 0.88 -70.43 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.03 Total: 37.00 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.85 Total: -6.26 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -3.80 Total: -111.25 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.79 Total: -34.08 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.90 Total: 43.77 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -71.30 0.88 -70.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755152859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.478 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds