Wall clock time and date at job start Tue Mar 31 2020 20:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.47132 * 2 1 4 4 N 1.46897 * 109.46875 * 239.99841 * 2 1 3 5 5 C 1.46892 * 111.00515 * 84.99975 * 4 2 1 6 6 C 1.50701 * 109.47506 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99550 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99642 * 179.97438 * 6 5 4 9 9 C 1.37104 * 119.99477 * 180.02562 * 8 6 5 10 10 H 1.07999 * 119.99869 * 359.97438 * 9 8 6 11 11 C 1.38943 * 119.99729 * 180.02562 * 9 8 6 12 12 N 1.31415 * 120.00597 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99821 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46977 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46910 * 120.00137 * 13 11 9 16 16 H 1.48502 * 109.47203 * 239.99645 * 13 11 9 17 17 C 1.53000 * 109.46967 * 119.99426 * 2 1 3 18 18 H 1.08996 * 109.47163 * 184.99740 * 17 2 1 19 19 C 1.53002 * 109.46889 * 65.00098 * 17 2 1 20 20 N 1.46500 * 109.47473 * 305.00400 * 17 2 1 21 21 C 1.34773 * 119.99626 * 205.00391 * 20 17 2 22 22 O 1.21568 * 120.00541 * 359.97438 * 21 20 17 23 23 C 1.47727 * 119.99735 * 179.97438 * 21 20 17 24 24 C 1.40152 * 120.53145 * 179.97438 * 23 21 20 25 25 C 1.38160 * 118.32383 * 179.72191 * 24 23 21 26 26 C 1.38757 * 119.28139 * 0.27968 * 25 24 23 27 27 F 1.35101 * 119.48775 * 179.97438 * 26 25 24 28 28 N 1.32143 * 121.01840 * 0.02562 * 26 25 24 29 29 C 1.31689 * 121.84111 * 359.97438 * 28 26 25 30 30 H 1.08994 * 109.47344 * 60.00274 * 1 2 3 31 31 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46755 * 300.00339 * 1 2 3 33 33 H 1.00907 * 110.99316 * 208.95451 * 4 2 1 34 34 H 1.08999 * 109.47025 * 300.00235 * 5 4 2 35 35 H 1.09001 * 109.47155 * 59.99349 * 5 4 2 36 36 H 0.97001 * 120.00351 * 0.02562 * 8 6 5 37 37 H 0.96988 * 120.00278 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47295 * 60.00156 * 19 17 2 39 39 H 1.09005 * 109.47167 * 179.97438 * 19 17 2 40 40 H 1.09001 * 109.47348 * 299.99654 * 19 17 2 41 41 H 0.96996 * 119.99992 * 24.99278 * 20 17 2 42 42 H 1.08002 * 120.84034 * 0.02562 * 24 23 21 43 43 H 1.07998 * 120.35888 * 180.25617 * 25 24 23 44 44 H 1.07998 * 119.70348 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5885 -0.5218 -3.5557 7 8 2.8687 -1.6987 -3.4698 8 7 2.7286 0.1203 -4.7324 9 6 3.1884 -0.5569 -5.8322 10 1 3.4387 -1.6047 -5.7555 11 6 3.3334 0.1051 -7.0452 12 7 3.0292 1.3802 -7.1384 13 14 3.9606 -0.8174 -8.5436 14 1 4.2301 -2.2311 -8.1775 15 1 2.9368 -0.7703 -9.6182 16 1 5.2140 -0.1838 -9.0261 17 6 2.0400 -0.7211 1.2493 18 1 3.1263 -0.6443 1.2952 19 6 1.6353 -2.1954 1.1881 20 7 1.4558 -0.1035 2.4424 21 6 2.0913 -0.1936 3.6275 22 8 3.1490 -0.7876 3.7066 23 6 1.5025 0.4297 4.8305 24 6 2.1535 0.3425 6.0686 25 6 1.5649 0.9470 7.1627 26 6 0.3565 1.6100 7.0033 27 9 -0.2230 2.2022 8.0704 28 7 -0.2368 1.6702 5.8241 29 6 0.2864 1.1092 4.7537 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6161 -2.5525 35 1 2.7588 1.0460 -2.1183 36 1 2.5041 1.0615 -4.8011 37 1 3.1308 1.8423 -7.9850 38 1 2.0699 -2.6550 0.3005 39 1 1.9989 -2.7093 2.0780 40 1 0.5489 -2.2723 1.1422 41 1 0.6118 0.3703 2.3794 42 1 3.0940 -0.1799 6.1641 43 1 2.0401 0.9037 8.1315 44 1 -0.2285 1.1794 3.8069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755233113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:55 Heat of formation + Delta-G solvation = -97.273170 kcal Electronic energy + Delta-G solvation = -27938.952488 eV Core-core repulsion = 23612.082979 eV Total energy + Delta-G solvation = -4326.869510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.20969 -41.80789 -40.49167 -40.04637 -38.49341 -36.06739 -35.42904 -33.90332 -33.30881 -32.97394 -31.37405 -30.00747 -28.12670 -26.22430 -25.92224 -25.14108 -24.33087 -22.02307 -21.11064 -20.82014 -19.92786 -19.50948 -18.98837 -18.48586 -17.67192 -17.27746 -17.14256 -16.74982 -16.64296 -16.26021 -16.13569 -15.89320 -15.64071 -15.44851 -15.18893 -14.78040 -14.56900 -14.25664 -14.23701 -14.22400 -14.02245 -13.61587 -13.52384 -13.40491 -13.07332 -13.03997 -12.83442 -12.51142 -12.38972 -12.11157 -11.92655 -11.66287 -11.50123 -11.42687 -11.25750 -10.81136 -10.39565 -10.31307 -10.10063 -10.00028 -9.35176 -8.46042 -5.94403 -0.70061 -0.06614 1.37173 1.42676 1.56563 1.60315 1.87791 2.07253 2.30326 2.33080 2.54068 2.96202 3.21638 3.25154 3.47649 3.53232 3.62562 3.64382 3.79232 3.96112 4.13165 4.21120 4.32842 4.45004 4.48479 4.48909 4.61352 4.67837 4.70838 4.80202 4.83700 4.86779 5.01376 5.07037 5.29359 5.33274 5.41624 5.42436 5.54563 5.89877 6.10640 6.32803 6.36279 6.39849 6.61362 7.05608 7.14107 7.58060 8.13404 8.71540 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031399 B = 0.001686 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.543763 B =16605.786981 C =16973.476445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.061 0.939 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.622 6.622 8 N -0.574 5.574 9 C -0.332 4.332 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.271 1.271 16 H -0.272 1.272 17 C 0.150 3.850 18 H 0.073 0.927 19 C -0.152 4.152 20 N -0.701 5.701 21 C 0.568 3.432 22 O -0.568 6.568 23 C -0.204 4.204 24 C 0.010 3.990 25 C -0.185 4.185 26 C 0.315 3.685 27 F -0.112 7.112 28 N -0.538 5.538 29 C 0.180 3.820 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.344 0.656 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.414 0.586 42 H 0.167 0.833 43 H 0.185 0.815 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 3.979 27.633 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 H 0.079 0.921 4 N -0.302 5.302 5 C -0.066 4.066 6 C 0.226 3.774 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.197 1.197 17 C 0.045 3.955 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.355 5.355 21 C 0.355 3.645 22 O -0.448 6.448 23 C -0.209 4.209 24 C -0.016 4.016 25 C -0.205 4.205 26 C 0.163 3.837 27 F -0.091 7.091 28 N -0.253 5.253 29 C 0.022 3.978 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.254 0.746 42 H 0.185 0.815 43 H 0.202 0.798 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.367 3.138 27.389 28.535 hybrid contribution 1.283 0.521 -0.562 1.494 sum -6.085 3.659 26.826 27.750 Atomic orbital electron populations 1.21933 0.92798 1.03057 1.02530 1.21789 0.97651 0.96052 0.87505 0.92072 1.60218 1.34678 1.32086 1.03184 1.21586 1.02468 0.93602 0.88977 1.20900 0.83122 0.87992 0.85426 1.90499 1.56551 1.18217 1.85583 1.41938 1.58378 1.12604 1.08243 1.19698 1.41953 0.95953 0.88599 0.90352 1.26014 0.97305 0.96617 1.01340 1.69669 1.48750 1.09658 1.28065 0.84887 0.78140 0.78042 0.77365 1.19853 1.19627 1.19690 1.20901 0.97965 0.93262 0.83362 0.90923 1.22050 1.02714 0.94659 1.01570 1.45881 1.26146 1.56319 1.07155 1.18089 0.83853 0.79196 0.83331 1.90812 1.23781 1.44309 1.85876 1.20969 0.99013 1.05646 0.95294 1.21851 0.98896 0.91360 0.89472 1.22073 0.95008 1.00406 1.03044 1.18703 0.89886 0.91982 0.83132 1.91650 1.84582 1.81230 1.51680 1.67031 1.36507 1.22495 0.99264 1.23092 0.90347 0.88048 0.96362 0.92346 0.91810 0.89807 0.83679 0.87430 0.91622 0.76961 0.91342 0.91713 0.93512 0.90872 0.74635 0.81534 0.79782 0.78571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.93 71.98 0.64 -1.56 16 2 C 0.08 1.52 2.66 44.92 0.12 1.64 16 3 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 4 N -0.67 -18.83 5.14 -495.58 -2.55 -21.37 16 5 C 0.07 2.09 5.96 85.56 0.51 2.60 16 6 C 0.44 20.20 7.82 87.66 0.69 20.89 16 7 O -0.62 -33.76 15.78 -3.05 -0.05 -33.81 16 8 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 9 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 10 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 11 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 12 N -0.92 -49.18 13.05 21.66 0.28 -48.90 16 13 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 C 0.15 2.84 2.30 44.99 0.10 2.95 16 18 H 0.07 1.68 7.58 -2.39 -0.02 1.66 16 19 C -0.15 -3.18 9.02 71.98 0.65 -2.53 16 20 N -0.70 -9.67 4.94 -445.52 -2.20 -11.87 16 21 C 0.57 9.96 7.74 86.75 0.67 10.64 16 22 O -0.57 -14.57 16.08 -3.93 -0.06 -14.63 16 23 C -0.20 -2.65 5.89 -19.99 -0.12 -2.77 16 24 C 0.01 0.11 9.71 22.72 0.22 0.33 16 25 C -0.18 -1.70 10.07 22.38 0.23 -1.47 16 26 C 0.32 4.37 8.41 84.77 0.71 5.08 16 27 F -0.11 -1.70 17.29 44.97 0.78 -0.92 16 28 N -0.54 -8.15 10.36 -195.72 -2.03 -10.18 16 29 C 0.18 1.95 10.71 85.02 0.91 2.86 16 30 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 31 H 0.06 1.10 6.56 -2.39 -0.02 1.08 16 32 H 0.08 0.65 6.29 -2.39 -0.02 0.63 16 33 H 0.34 10.65 7.61 -89.69 -0.68 9.97 16 34 H 0.11 3.01 7.44 -2.39 -0.02 2.99 16 35 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 37 H 0.28 13.84 8.31 -92.72 -0.77 13.07 16 38 H 0.06 1.62 7.17 -2.39 -0.02 1.60 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.34 6.56 -2.39 -0.02 1.33 16 41 H 0.41 3.07 4.64 -92.71 -0.43 2.64 16 42 H 0.17 1.66 7.73 -2.91 -0.02 1.64 16 43 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.20 0.78 6.42 -2.91 -0.02 0.76 16 Total: -1.00 -73.97 374.07 0.44 -73.53 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.75 Total: 33.40 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.61 Total: 20.52 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -8.11 Total: -122.85 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.11 Total: -48.44 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.78 Total: -0.92 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.97 0.44 -73.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755233113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.746 kcal (2) G-P(sol) polarization free energy of solvation -73.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds