Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 N 1.46895 * 109.47419 * 119.99706 * 2 1 3 5 5 C 1.46908 * 111.00012 * 275.00234 * 4 2 1 6 6 C 1.50700 * 109.47032 * 179.97438 * 5 4 2 7 7 O 1.21294 * 120.00076 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00064 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99781 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00247 * 179.97438 * 9 8 6 12 12 N 1.31409 * 119.99965 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.46991 * 119.99805 * 13 11 9 16 16 H 1.48496 * 109.47311 * 240.00086 * 13 11 9 17 17 C 1.53000 * 109.47436 * 239.99955 * 2 1 3 18 18 H 1.08995 * 109.46672 * 300.00198 * 17 2 1 19 19 C 1.52997 * 109.47407 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.47040 * 59.99409 * 17 2 1 21 21 C 1.34770 * 120.00113 * 205.00108 * 20 17 2 22 22 O 1.21561 * 120.00101 * 0.02562 * 21 20 17 23 23 C 1.47727 * 120.00084 * 180.02562 * 21 20 17 24 24 C 1.40152 * 120.52951 * 180.02562 * 23 21 20 25 25 C 1.38165 * 118.32122 * 179.97438 * 24 23 21 26 26 C 1.38747 * 119.28293 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.49250 * 180.02562 * 26 25 24 28 28 N 1.32144 * 121.01680 * 0.02562 * 26 25 24 29 29 C 1.31691 * 121.84660 * 359.97438 * 28 26 25 30 30 H 1.09000 * 109.47085 * 59.99935 * 1 2 3 31 31 H 1.08997 * 109.46619 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47123 * 300.00350 * 1 2 3 33 33 H 1.00895 * 111.00418 * 151.04842 * 4 2 1 34 34 H 1.08997 * 109.47138 * 299.99400 * 5 4 2 35 35 H 1.09002 * 109.46923 * 59.99875 * 5 4 2 36 36 H 0.97003 * 120.00627 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99693 * 179.97438 * 12 11 9 38 38 H 1.08995 * 109.47223 * 300.00588 * 19 17 2 39 39 H 1.09005 * 109.46757 * 59.99839 * 19 17 2 40 40 H 1.09000 * 109.47094 * 179.97438 * 19 17 2 41 41 H 0.97001 * 119.99806 * 25.00620 * 20 17 2 42 42 H 1.08002 * 120.84342 * 359.97438 * 24 23 21 43 43 H 1.07992 * 120.35439 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.70879 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2228 2.3469 6 6 2.5874 -0.5216 3.5560 7 8 2.8679 -1.6985 3.4702 8 7 2.7273 0.1205 4.7327 9 6 3.1872 -0.5565 5.8326 10 1 3.4370 -1.6045 5.7562 11 6 3.3320 0.1056 7.0456 12 7 3.0286 1.3808 7.1384 13 14 3.9579 -0.8171 8.5444 14 1 4.2267 -2.2310 8.1787 15 1 5.2115 -0.1843 9.0273 16 1 2.9336 -0.7693 9.6185 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2492 19 6 3.5701 -0.7207 -1.2495 20 7 1.5516 -0.0307 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7117 -1.8826 -3.6608 23 6 0.9310 -0.0066 -4.8127 24 6 0.7924 -0.6952 -6.0255 25 6 0.3278 0.0008 -7.1249 26 6 0.0167 1.3466 -6.9944 27 9 -0.4385 2.0310 -8.0666 28 7 0.1587 1.9692 -5.8375 29 6 0.5979 1.3473 -4.7630 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.9173 -1.1204 1.0288 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6164 2.5525 36 1 2.5034 1.0618 4.8012 37 1 3.1293 1.8429 7.9853 38 1 3.9330 0.3071 -1.2497 39 1 3.9337 -1.2343 -0.3595 40 1 3.9334 -1.2349 -2.1393 41 1 1.3209 0.9105 -2.4019 42 1 1.0425 -1.7433 -6.0989 43 1 0.2081 -0.4975 -8.0755 44 1 0.7012 1.8901 -3.8352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755233115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = -73.144414 kcal Electronic energy + Delta-G solvation = -27933.798332 eV Core-core repulsion = 23607.975124 eV Total energy + Delta-G solvation = -4325.823208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.64060 -41.17296 -39.69171 -38.47155 -37.32798 -34.67832 -33.86263 -33.36162 -32.25667 -31.25797 -30.36558 -29.87356 -26.46567 -25.28148 -24.59359 -24.26840 -23.17775 -21.12926 -20.67383 -19.36462 -18.87186 -18.27719 -18.01611 -17.79274 -16.70667 -16.41055 -16.28202 -15.61414 -15.44892 -15.36130 -14.97001 -14.55166 -14.32004 -14.14650 -14.02601 -13.84313 -13.77216 -13.61099 -13.52297 -13.47681 -13.03111 -12.52052 -12.42969 -11.97569 -11.75894 -11.65163 -11.49433 -11.39726 -11.08383 -10.75906 -10.74009 -10.68694 -10.35588 -10.24390 -10.17729 -9.75310 -9.54075 -9.43591 -8.49438 -8.15194 -7.98461 -6.43922 -3.84684 -0.14517 0.40783 2.26414 2.59324 2.83451 3.11503 3.15128 3.26024 3.33321 3.73625 3.87850 4.00370 4.06538 4.10294 4.24857 4.29514 4.51026 4.64657 4.75774 4.85249 5.03558 5.09922 5.19631 5.22690 5.28144 5.31333 5.40271 5.55195 5.61034 5.73006 5.78504 5.81733 5.88740 5.92502 6.05812 6.10630 6.20296 6.30110 6.85083 7.02421 7.13934 7.53682 7.57886 7.74506 8.04345 8.58727 9.15946 9.51855 10.03031 10.73826 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.001683 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.060413 B =16632.201493 C =17120.005659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.048 0.952 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.299 4.299 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.141 3.859 18 H 0.103 0.897 19 C -0.171 4.171 20 N -0.714 5.714 21 C 0.567 3.433 22 O -0.526 6.526 23 C -0.197 4.197 24 C 0.012 3.988 25 C -0.198 4.198 26 C 0.329 3.671 27 F -0.106 7.106 28 N -0.515 5.515 29 C 0.174 3.826 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 3.346 -26.994 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 H 0.066 0.934 4 N -0.296 5.296 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.466 6.466 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.037 3.963 18 H 0.121 0.879 19 C -0.230 4.230 20 N -0.366 5.366 21 C 0.353 3.647 22 O -0.403 6.403 23 C -0.202 4.202 24 C -0.014 4.014 25 C -0.220 4.220 26 C 0.176 3.824 27 F -0.085 7.085 28 N -0.229 5.229 29 C 0.015 3.985 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.175 0.825 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.234 0.766 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.805 2.462 -26.733 27.466 hybrid contribution 0.874 0.736 0.410 1.214 sum -4.932 3.197 -26.323 26.971 Atomic orbital electron populations 1.21821 0.94078 1.02903 1.01073 1.21747 0.96600 0.95898 0.89149 0.93441 1.60174 1.35393 1.31854 1.02206 1.21729 1.01398 0.93825 0.91179 1.19780 0.85027 0.88212 0.84432 1.90533 1.55264 1.16098 1.84737 1.41865 1.57739 1.12432 1.07968 1.19763 1.39829 0.96487 0.86777 0.87826 1.25265 0.97653 0.95784 0.99259 1.69618 1.48715 1.08866 1.27097 0.85797 0.78216 0.79645 0.80678 1.19196 1.20782 1.20734 1.21158 0.94120 0.98353 0.82696 0.87864 1.22269 0.94904 1.02399 1.03386 1.45911 1.67123 1.13938 1.09584 1.17795 0.77903 0.86470 0.82564 1.90828 1.49666 1.15130 1.84642 1.21084 1.07144 0.95887 0.96124 1.21679 0.89046 1.01199 0.89449 1.21884 1.04723 0.93277 1.02075 1.18428 0.93202 0.87425 0.83300 1.91667 1.85369 1.80474 1.50999 1.67019 1.16568 1.40476 0.98881 1.22750 0.89862 0.90409 0.95448 0.92992 0.91627 0.92146 0.82532 0.93770 0.89490 0.77474 0.91920 0.92352 0.90561 0.91581 0.76639 0.82131 0.82493 0.81200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.26 37.16 0.34 -1.09 16 2 C 0.08 0.82 2.28 -67.72 -0.15 0.67 16 3 H 0.05 0.45 7.80 -51.93 -0.40 0.04 16 4 N -0.66 -9.88 5.93 -107.99 -0.64 -10.52 16 5 C 0.05 0.85 5.97 -4.97 -0.03 0.82 16 6 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 7 O -0.58 -15.53 15.78 5.55 0.09 -15.45 16 8 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 9 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 10 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 13 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 C 0.14 1.41 2.29 -67.93 -0.16 1.25 16 18 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 19 C -0.17 -1.71 9.25 37.16 0.34 -1.37 16 20 N -0.71 -5.44 4.34 -54.79 -0.24 -5.68 16 21 C 0.57 5.20 7.74 -12.39 -0.10 5.11 16 22 O -0.53 -6.74 16.08 5.31 0.09 -6.66 16 23 C -0.20 -1.41 5.89 -104.82 -0.62 -2.03 16 24 C 0.01 0.08 9.71 -38.89 -0.38 -0.30 16 25 C -0.20 -1.09 10.07 -39.42 -0.40 -1.49 16 26 C 0.33 2.51 8.41 -17.23 -0.14 2.37 16 27 F -0.11 -0.86 17.29 2.25 0.04 -0.82 16 28 N -0.52 -4.30 10.36 -13.22 -0.14 -4.44 16 29 C 0.17 1.11 10.71 -17.14 -0.18 0.92 16 30 H 0.05 0.40 7.45 -51.93 -0.39 0.01 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 33 H 0.35 5.47 5.87 -39.29 -0.23 5.24 16 34 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.09 1.33 7.44 -51.93 -0.39 0.95 16 36 H 0.39 9.28 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.84 6.21 -51.93 -0.32 0.51 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.40 1.94 6.45 -40.82 -0.26 1.67 16 42 H 0.16 0.88 7.73 -52.49 -0.41 0.47 16 43 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.17 0.58 6.42 -52.49 -0.34 0.24 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -33.77 377.84 -6.72 -40.49 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.46 Total: 12.11 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.79 Total: 6.99 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.35 Total: -58.20 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.17 Total: -22.10 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 0.04 Total: -0.82 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -6.72 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755233115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.658 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds