Wall clock time and date at job start Tue Mar 31 2020 20:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47022 * 2 1 4 4 N 1.46895 * 109.47419 * 119.99706 * 2 1 3 5 5 C 1.46908 * 111.00012 * 275.00234 * 4 2 1 6 6 C 1.50700 * 109.47032 * 179.97438 * 5 4 2 7 7 O 1.21294 * 120.00076 * 0.02562 * 6 5 4 8 8 N 1.34770 * 119.99795 * 180.02562 * 6 5 4 9 9 C 1.37102 * 120.00064 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99781 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00247 * 179.97438 * 9 8 6 12 12 N 1.31409 * 119.99965 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.46991 * 119.99805 * 13 11 9 16 16 H 1.48496 * 109.47311 * 240.00086 * 13 11 9 17 17 C 1.53000 * 109.47436 * 239.99955 * 2 1 3 18 18 H 1.08995 * 109.46672 * 300.00198 * 17 2 1 19 19 C 1.52997 * 109.47407 * 179.97438 * 17 2 1 20 20 N 1.46504 * 109.47040 * 59.99409 * 17 2 1 21 21 C 1.34770 * 120.00113 * 205.00108 * 20 17 2 22 22 O 1.21561 * 120.00101 * 0.02562 * 21 20 17 23 23 C 1.47727 * 120.00084 * 180.02562 * 21 20 17 24 24 C 1.40152 * 120.52951 * 180.02562 * 23 21 20 25 25 C 1.38165 * 118.32122 * 179.97438 * 24 23 21 26 26 C 1.38747 * 119.28293 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.49250 * 180.02562 * 26 25 24 28 28 N 1.32144 * 121.01680 * 0.02562 * 26 25 24 29 29 C 1.31691 * 121.84660 * 359.97438 * 28 26 25 30 30 H 1.09000 * 109.47085 * 59.99935 * 1 2 3 31 31 H 1.08997 * 109.46619 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47123 * 300.00350 * 1 2 3 33 33 H 1.00895 * 111.00418 * 151.04842 * 4 2 1 34 34 H 1.08997 * 109.47138 * 299.99400 * 5 4 2 35 35 H 1.09002 * 109.46923 * 59.99875 * 5 4 2 36 36 H 0.97003 * 120.00627 * 359.97438 * 8 6 5 37 37 H 0.97001 * 119.99693 * 179.97438 * 12 11 9 38 38 H 1.08995 * 109.47223 * 300.00588 * 19 17 2 39 39 H 1.09005 * 109.46757 * 59.99839 * 19 17 2 40 40 H 1.09000 * 109.47094 * 179.97438 * 19 17 2 41 41 H 0.97001 * 119.99806 * 25.00620 * 20 17 2 42 42 H 1.08002 * 120.84342 * 359.97438 * 24 23 21 43 43 H 1.07992 * 120.35439 * 180.02562 * 25 24 23 44 44 H 1.07991 * 119.70879 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2228 2.3469 6 6 2.5874 -0.5216 3.5560 7 8 2.8679 -1.6985 3.4702 8 7 2.7273 0.1205 4.7327 9 6 3.1872 -0.5565 5.8326 10 1 3.4370 -1.6045 5.7562 11 6 3.3320 0.1056 7.0456 12 7 3.0286 1.3808 7.1384 13 14 3.9579 -0.8171 8.5444 14 1 4.2267 -2.2310 8.1787 15 1 5.2115 -0.1843 9.0273 16 1 2.9336 -0.7693 9.6185 17 6 2.0401 -0.7212 -1.2492 18 1 1.6767 -1.7488 -1.2492 19 6 3.5701 -0.7207 -1.2495 20 7 1.5516 -0.0307 -2.4454 21 6 1.4230 -0.7031 -3.6063 22 8 1.7117 -1.8826 -3.6608 23 6 0.9310 -0.0066 -4.8127 24 6 0.7924 -0.6952 -6.0255 25 6 0.3278 0.0008 -7.1249 26 6 0.0167 1.3466 -6.9944 27 9 -0.4385 2.0310 -8.0666 28 7 0.1587 1.9692 -5.8375 29 6 0.5979 1.3473 -4.7630 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.9173 -1.1204 1.0288 34 1 2.7589 1.0463 2.1182 35 1 1.0871 0.6164 2.5525 36 1 2.5034 1.0618 4.8012 37 1 3.1293 1.8429 7.9853 38 1 3.9330 0.3071 -1.2497 39 1 3.9337 -1.2343 -0.3595 40 1 3.9334 -1.2349 -2.1393 41 1 1.3209 0.9105 -2.4019 42 1 1.0425 -1.7433 -6.0989 43 1 0.2081 -0.4975 -8.0755 44 1 0.7012 1.8901 -3.8352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755233115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:00 Heat of formation + Delta-G solvation = -99.313873 kcal Electronic energy + Delta-G solvation = -27934.933125 eV Core-core repulsion = 23607.975124 eV Total energy + Delta-G solvation = -4326.958001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.20469 -41.78954 -40.47954 -40.04032 -38.44453 -36.05566 -35.43244 -33.89333 -33.29900 -32.92198 -31.28098 -30.68214 -28.02535 -25.92005 -25.89734 -25.09146 -24.05293 -21.87670 -21.52625 -21.08721 -19.92313 -19.46121 -18.94106 -18.50753 -17.70373 -17.29575 -17.22850 -16.95540 -16.40520 -16.21844 -16.08696 -15.83355 -15.51599 -15.40870 -14.95921 -14.83322 -14.63938 -14.36831 -14.21810 -14.18861 -14.02731 -13.93148 -13.52119 -13.46380 -13.11256 -12.89532 -12.65916 -12.58457 -12.39342 -12.31458 -12.11103 -11.61347 -11.50124 -11.42482 -11.24897 -10.80138 -10.37222 -10.32456 -10.10400 -10.00005 -9.33005 -8.46032 -5.94264 -0.68967 -0.05669 1.37209 1.42844 1.56606 1.61839 1.87472 2.07088 2.30521 2.34068 2.55370 2.97415 3.21714 3.26471 3.49386 3.53615 3.59237 3.64224 3.80220 3.97052 4.13747 4.19605 4.32904 4.44851 4.46998 4.48702 4.58365 4.62485 4.71824 4.74354 4.83488 4.88738 4.98845 5.03274 5.22626 5.31381 5.36310 5.42020 5.43550 5.91374 6.12264 6.33961 6.39661 6.42506 6.61576 7.07949 7.14252 7.58090 8.13667 8.71461 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.001683 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.060413 B =16632.201493 C =17120.005659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.075 0.925 4 N -0.680 5.680 5 C 0.067 3.933 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.573 5.573 9 C -0.333 4.333 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.991 3.009 14 H -0.275 1.275 15 H -0.271 1.271 16 H -0.271 1.271 17 C 0.150 3.850 18 H 0.076 0.924 19 C -0.167 4.167 20 N -0.699 5.699 21 C 0.570 3.430 22 O -0.568 6.568 23 C -0.203 4.203 24 C 0.010 3.990 25 C -0.185 4.185 26 C 0.315 3.685 27 F -0.113 7.113 28 N -0.539 5.539 29 C 0.181 3.819 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.346 0.654 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.415 0.585 42 H 0.167 0.833 43 H 0.184 0.816 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 4.921 -27.754 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.093 0.907 4 N -0.316 5.316 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.511 6.511 8 N -0.210 5.210 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.197 1.197 17 C 0.045 3.955 18 H 0.094 0.906 19 C -0.225 4.225 20 N -0.351 5.351 21 C 0.357 3.643 22 O -0.447 6.447 23 C -0.208 4.208 24 C -0.016 4.016 25 C -0.206 4.206 26 C 0.163 3.837 27 F -0.092 7.092 28 N -0.254 5.254 29 C 0.022 3.978 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.184 0.816 43 H 0.201 0.799 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.181 4.103 -27.511 28.494 hybrid contribution 0.961 0.230 0.568 1.140 sum -5.220 4.332 -26.942 27.783 Atomic orbital electron populations 1.21833 0.93498 1.02016 1.02397 1.21794 0.96848 0.96746 0.87422 0.90738 1.60158 1.35343 1.32591 1.03467 1.21581 1.02519 0.93642 0.88778 1.20934 0.83149 0.87990 0.85502 1.90503 1.56631 1.18320 1.85634 1.41926 1.58313 1.12604 1.08190 1.19694 1.42007 0.95932 0.88637 0.90428 1.26003 0.97286 0.96620 1.01295 1.69669 1.48688 1.09609 1.28054 0.84893 0.78170 0.78031 0.77380 1.19927 1.19589 1.19676 1.20866 0.94054 0.97201 0.83370 0.90598 1.22211 0.94834 1.03164 1.02302 1.45694 1.66401 1.14595 1.08452 1.18045 0.77105 0.85957 0.83188 1.90817 1.51609 1.17020 1.85287 1.20961 1.08019 0.96320 0.95513 1.21851 0.88725 1.01585 0.89457 1.22064 1.03291 0.92331 1.02895 1.18699 0.93698 0.88167 0.83172 1.91649 1.85537 1.80716 1.51291 1.67034 1.17506 1.41277 0.99546 1.23112 0.88692 0.90041 0.95930 0.90027 0.93659 0.92445 0.83160 0.90957 0.87645 0.76894 0.91324 0.90587 0.91900 0.92422 0.74619 0.81583 0.79854 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.26 71.98 0.67 -1.85 16 2 C 0.08 1.56 2.28 44.92 0.10 1.66 16 3 H 0.07 1.09 7.80 -2.38 -0.02 1.08 16 4 N -0.68 -19.65 5.93 -495.56 -2.94 -22.59 16 5 C 0.07 2.11 5.97 85.56 0.51 2.62 16 6 C 0.44 20.18 7.82 87.66 0.69 20.87 16 7 O -0.62 -34.20 15.78 -3.07 -0.05 -34.24 16 8 N -0.57 -28.74 5.29 -306.98 -1.62 -30.36 16 9 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 10 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 11 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 12 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 13 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 17 C 0.15 2.82 2.29 44.99 0.10 2.93 16 18 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 19 C -0.17 -3.18 9.25 71.98 0.67 -2.52 16 20 N -0.70 -9.18 4.34 -445.54 -1.93 -11.11 16 21 C 0.57 9.76 7.74 86.75 0.67 10.43 16 22 O -0.57 -14.51 16.08 -3.91 -0.06 -14.57 16 23 C -0.20 -2.56 5.89 -20.00 -0.12 -2.68 16 24 C 0.01 0.11 9.71 22.72 0.22 0.33 16 25 C -0.19 -1.69 10.07 22.37 0.23 -1.46 16 26 C 0.31 4.34 8.41 84.77 0.71 5.05 16 27 F -0.11 -1.71 17.29 44.97 0.78 -0.93 16 28 N -0.54 -8.05 10.36 -195.74 -2.03 -10.08 16 29 C 0.18 1.88 10.71 85.02 0.91 2.79 16 30 H 0.08 0.97 7.45 -2.39 -0.02 0.95 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.09 7.45 -2.39 -0.02 1.07 16 33 H 0.35 10.71 5.87 -89.70 -0.53 10.19 16 34 H 0.07 1.91 8.05 -2.39 -0.02 1.89 16 35 H 0.11 2.98 7.44 -2.39 -0.02 2.96 16 36 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 37 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.38 6.21 -2.38 -0.01 1.37 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.42 2.59 6.45 -92.71 -0.60 1.99 16 42 H 0.17 1.64 7.73 -2.91 -0.02 1.62 16 43 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 44 H 0.20 0.66 6.42 -2.92 -0.02 0.64 16 Total: -1.00 -75.06 377.84 0.32 -74.74 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.77 Total: 32.99 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.64 Total: 20.06 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -8.24 Total: -122.71 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.11 Total: -48.82 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -75.06 0.32 -74.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755233115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.575 kcal (2) G-P(sol) polarization free energy of solvation -75.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds