Wall clock time and date at job start Tue Mar 31 2020 21:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46805 * 2 1 4 4 N 1.46499 * 109.47262 * 239.99791 * 2 1 3 5 5 C 1.34779 * 119.99878 * 85.00279 * 4 2 1 6 6 N 1.34779 * 119.99486 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99839 * 359.97438 * 5 4 2 8 8 C 1.50703 * 109.47045 * 119.99422 * 2 1 3 9 9 O 1.21281 * 119.99480 * 119.99940 * 8 2 1 10 10 N 1.34778 * 120.00036 * 300.00268 * 8 2 1 11 11 C 1.46501 * 119.99558 * 179.97438 * 10 8 2 12 12 C 1.50700 * 109.46542 * 180.02562 * 11 10 8 13 13 C 1.38221 * 120.01102 * 259.97498 * 12 11 10 14 14 C 1.38220 * 120.02576 * 179.77155 * 13 12 11 15 15 C 1.38277 * 120.04953 * 0.51339 * 14 13 12 16 16 C 1.50700 * 119.98580 * 179.77046 * 15 14 13 17 17 N 1.46498 * 109.46769 * 269.71637 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.38170 * 120.02576 * 359.48562 * 15 14 13 27 27 C 1.38441 * 120.01358 * 80.00531 * 12 11 10 28 28 F 1.35100 * 120.02602 * 359.94703 * 27 12 11 29 29 H 1.09001 * 109.47358 * 300.00295 * 1 2 3 30 30 H 1.09004 * 109.46722 * 60.00354 * 1 2 3 31 31 H 1.08998 * 109.47186 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99566 * 265.00000 * 4 2 1 33 33 H 0.96991 * 120.00408 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99740 * 179.97438 * 6 5 4 35 35 H 0.96997 * 119.99861 * 359.97438 * 10 8 2 36 36 H 1.08995 * 109.47030 * 60.00383 * 11 10 8 37 37 H 1.08998 * 109.47121 * 299.99959 * 11 10 8 38 38 H 1.07997 * 119.98840 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.98077 * 180.25523 * 14 13 12 40 40 H 1.09004 * 109.47210 * 149.71995 * 16 15 14 41 41 H 1.08994 * 109.47121 * 29.71965 * 16 15 14 42 42 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.01636 * 180.23671 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5960 -0.6539 -3.4576 7 8 1.8576 1.1613 -2.4118 8 6 2.0323 -0.7103 1.2306 9 8 2.7296 -1.6964 1.1193 10 7 1.7067 -0.2497 2.4546 11 6 2.1946 -0.9406 3.6508 12 6 1.6918 -0.2304 4.8812 13 6 2.5216 0.6369 5.5664 14 6 2.0592 1.2921 6.6922 15 6 0.7696 1.0726 7.1404 16 6 0.2687 1.7838 8.3710 17 7 0.5509 0.9685 9.5550 18 6 0.1889 1.4169 10.7972 19 1 -0.3086 2.3696 10.9036 20 6 0.4615 0.6471 11.9197 21 7 1.0683 -0.5137 11.7900 22 14 -0.0328 1.2584 13.6141 23 1 -1.4050 0.7865 13.9298 24 1 0.9169 0.7318 14.6269 25 1 -0.0034 2.7430 13.6327 26 6 -0.0617 0.2061 6.4570 27 6 0.3987 -0.4469 5.3259 28 9 -0.4134 -1.2942 4.6567 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.8266 -1.5950 -3.4140 34 1 2.6883 -0.1701 -4.2933 35 1 1.1493 0.5391 2.5435 36 1 3.2845 -0.9410 3.6510 37 1 1.8309 -1.9682 3.6507 38 1 3.5303 0.8059 5.2197 39 1 2.7069 1.9728 7.2247 40 1 -0.8065 1.9421 8.2868 41 1 0.7714 2.7463 8.4643 42 1 0.9981 0.1130 9.4595 43 1 1.2585 -1.0519 12.5743 44 1 -1.0702 0.0377 6.8050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755901114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:10 Heat of formation + Delta-G solvation = -80.442666 kcal Electronic energy + Delta-G solvation = -27955.571621 eV Core-core repulsion = 23629.431937 eV Total energy + Delta-G solvation = -4326.139684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.87573 -40.80986 -39.72417 -39.09337 -35.82787 -35.27934 -34.50378 -34.09951 -32.32171 -30.87970 -30.53393 -29.93536 -27.27247 -25.19524 -24.17861 -22.86616 -22.52255 -21.60609 -20.85336 -20.63898 -19.16210 -18.14573 -17.52909 -16.89169 -16.67044 -16.64475 -16.43944 -15.93960 -15.54507 -15.41477 -15.15998 -14.92064 -14.71324 -14.45139 -14.06717 -13.95599 -13.58348 -13.40001 -13.35312 -13.25975 -12.83010 -12.72489 -12.32152 -12.11957 -12.03026 -11.88508 -11.47247 -11.11687 -10.86602 -10.73724 -10.70114 -10.31276 -10.13566 -10.11332 -9.84951 -9.55332 -9.43735 -8.97921 -8.85604 -8.56889 -7.03364 -5.83531 -3.14397 1.05521 1.28322 2.19161 2.28628 2.78674 2.99652 3.39676 3.44605 3.46597 3.65805 4.04654 4.22532 4.25840 4.41702 4.55447 4.62614 4.70742 4.74331 5.03348 5.13390 5.16332 5.33897 5.41410 5.45067 5.49195 5.52348 5.73293 5.88519 5.95171 5.97914 6.02181 6.06035 6.10860 6.27326 6.31584 6.34613 6.45685 6.49520 6.86351 6.95111 7.07824 7.52648 7.62473 7.76239 8.20209 8.33572 9.45541 9.99275 10.34754 11.38687 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034778 B = 0.001758 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.918788 B =15919.148375 C =15977.746235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.117 0.883 4 N -0.728 5.728 5 C 0.710 3.290 6 N -0.866 5.866 7 O -0.595 6.595 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.716 5.716 11 C 0.168 3.832 12 C -0.160 4.160 13 C -0.074 4.074 14 C -0.115 4.115 15 C -0.035 4.035 16 C 0.183 3.817 17 N -0.726 5.726 18 C -0.246 4.246 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.140 4.140 27 C 0.111 3.889 28 F -0.139 7.139 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.416 0.584 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 -0.529 -27.837 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.134 0.866 4 N -0.386 5.386 5 C 0.408 3.592 6 N -0.434 5.434 7 O -0.473 6.473 8 C 0.297 3.703 9 O -0.415 6.415 10 N -0.368 5.368 11 C 0.046 3.954 12 C -0.162 4.162 13 C -0.093 4.093 14 C -0.134 4.134 15 C -0.036 4.036 16 C 0.056 3.944 17 N -0.371 5.371 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.159 4.159 27 C 0.092 3.908 28 F -0.118 7.118 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.226 0.774 34 H 0.248 0.752 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.299 -0.188 -27.655 27.751 hybrid contribution -0.248 -0.605 0.715 0.968 sum 2.051 -0.793 -26.940 27.030 Atomic orbital electron populations 1.22174 0.92662 1.03303 1.03859 1.20585 0.95612 0.97815 0.82497 0.86559 1.44773 1.71438 1.14458 1.07955 1.15857 0.77949 0.84833 0.80584 1.42935 1.73389 1.15044 1.11984 1.90980 1.57363 1.14300 1.84696 1.20576 0.80234 0.84701 0.84755 1.90706 1.37951 1.26265 1.86598 1.46010 1.53543 1.32174 1.05030 1.20075 0.99509 0.95652 0.80176 1.19691 0.93664 1.03126 0.99693 1.20915 0.99107 0.94494 0.94768 1.21221 0.95611 1.00447 0.96085 1.20270 0.93173 0.94474 0.95646 1.19742 0.97580 0.93432 0.83602 1.42314 1.71964 1.22145 1.00688 1.19228 1.32126 1.02660 0.83667 0.90951 1.24773 1.01102 0.96824 0.97995 1.69673 1.46583 1.12518 1.29026 0.86156 0.77767 0.77939 0.84089 1.21625 1.21705 1.20669 1.21141 1.02008 0.98208 0.94533 1.17521 0.88296 0.92137 0.92886 1.91485 1.72279 1.68512 1.79489 0.90757 0.90529 0.91672 0.75702 0.77367 0.75208 0.76017 0.89928 0.90190 0.85075 0.84901 0.95030 0.94830 0.78001 0.93378 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.38 37.16 0.35 -0.77 16 2 C 0.14 1.17 2.98 -69.08 -0.21 0.97 16 3 H 0.12 0.98 7.58 -51.93 -0.39 0.59 16 4 N -0.73 -5.75 4.96 -59.81 -0.30 -6.04 16 5 C 0.71 6.36 8.80 -86.91 -0.77 5.59 16 6 N -0.87 -4.13 8.88 27.63 0.25 -3.88 16 7 O -0.60 -7.72 16.84 5.29 0.09 -7.63 16 8 C 0.51 4.94 7.22 -10.98 -0.08 4.86 16 9 O -0.54 -6.76 15.84 5.56 0.09 -6.67 16 10 N -0.72 -6.27 5.44 -61.47 -0.33 -6.61 16 11 C 0.17 1.73 5.52 -5.19 -0.03 1.70 16 12 C -0.16 -1.84 5.25 -104.55 -0.55 -2.39 16 13 C -0.07 -0.84 9.67 -39.59 -0.38 -1.22 16 14 C -0.11 -1.56 9.70 -39.57 -0.38 -1.94 16 15 C -0.03 -0.54 5.25 -104.63 -0.55 -1.09 16 16 C 0.18 3.46 6.38 -5.19 -0.03 3.43 16 17 N -0.73 -17.75 5.59 -61.09 -0.34 -18.09 16 18 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 22 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.14 -2.06 9.68 -39.51 -0.38 -2.44 16 27 C 0.11 1.48 7.25 -39.41 -0.29 1.19 16 28 F -0.14 -1.87 16.66 2.25 0.04 -1.84 16 29 H 0.07 0.42 7.56 -51.93 -0.39 0.03 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.41 2.81 7.80 -40.82 -0.32 2.49 16 33 H 0.40 0.83 8.84 -40.82 -0.36 0.47 16 34 H 0.42 1.54 8.93 -40.82 -0.36 1.18 16 35 H 0.40 2.88 7.88 -40.82 -0.32 2.56 16 36 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 37 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 38 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.03 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.39 10.10 7.66 -40.82 -0.31 9.78 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -34.66 385.68 -8.33 -42.99 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.79 Total: 11.37 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -3.54 Total: 0.65 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.00 Total: -61.57 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.18 Total: -14.31 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.66 -8.33 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755901114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.448 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds