Wall clock time and date at job start Tue Mar 31 2020 21:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46805 * 2 1 4 4 N 1.46499 * 109.47262 * 239.99791 * 2 1 3 5 5 C 1.34779 * 119.99878 * 85.00279 * 4 2 1 6 6 N 1.34779 * 119.99486 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99839 * 359.97438 * 5 4 2 8 8 C 1.50703 * 109.47045 * 119.99422 * 2 1 3 9 9 O 1.21281 * 119.99480 * 119.99940 * 8 2 1 10 10 N 1.34778 * 120.00036 * 300.00268 * 8 2 1 11 11 C 1.46501 * 119.99558 * 179.97438 * 10 8 2 12 12 C 1.50700 * 109.46542 * 180.02562 * 11 10 8 13 13 C 1.38221 * 120.01102 * 259.97498 * 12 11 10 14 14 C 1.38220 * 120.02576 * 179.77155 * 13 12 11 15 15 C 1.38277 * 120.04953 * 0.51339 * 14 13 12 16 16 C 1.50700 * 119.98580 * 179.77046 * 15 14 13 17 17 N 1.46498 * 109.46769 * 269.71637 * 16 15 14 18 18 C 1.36943 * 119.99752 * 179.72432 * 17 16 15 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.38170 * 120.02576 * 359.48562 * 15 14 13 27 27 C 1.38441 * 120.01358 * 80.00531 * 12 11 10 28 28 F 1.35100 * 120.02602 * 359.94703 * 27 12 11 29 29 H 1.09001 * 109.47358 * 300.00295 * 1 2 3 30 30 H 1.09004 * 109.46722 * 60.00354 * 1 2 3 31 31 H 1.08998 * 109.47186 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99566 * 265.00000 * 4 2 1 33 33 H 0.96991 * 120.00408 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99740 * 179.97438 * 6 5 4 35 35 H 0.96997 * 119.99861 * 359.97438 * 10 8 2 36 36 H 1.08995 * 109.47030 * 60.00383 * 11 10 8 37 37 H 1.08998 * 109.47121 * 299.99959 * 11 10 8 38 38 H 1.07997 * 119.98840 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.98077 * 180.25523 * 14 13 12 40 40 H 1.09004 * 109.47210 * 149.71995 * 16 15 14 41 41 H 1.08994 * 109.47121 * 29.71965 * 16 15 14 42 42 H 0.97001 * 120.00384 * 0.02562 * 17 16 15 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.01636 * 180.23671 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 7 2.5960 -0.6539 -3.4576 7 8 1.8576 1.1613 -2.4118 8 6 2.0323 -0.7103 1.2306 9 8 2.7296 -1.6964 1.1193 10 7 1.7067 -0.2497 2.4546 11 6 2.1946 -0.9406 3.6508 12 6 1.6918 -0.2304 4.8812 13 6 2.5216 0.6369 5.5664 14 6 2.0592 1.2921 6.6922 15 6 0.7696 1.0726 7.1404 16 6 0.2687 1.7838 8.3710 17 7 0.5509 0.9685 9.5550 18 6 0.1889 1.4169 10.7972 19 1 -0.3086 2.3696 10.9036 20 6 0.4615 0.6471 11.9197 21 7 1.0683 -0.5137 11.7900 22 14 -0.0328 1.2584 13.6141 23 1 -1.4050 0.7865 13.9298 24 1 0.9169 0.7318 14.6269 25 1 -0.0034 2.7430 13.6327 26 6 -0.0617 0.2061 6.4570 27 6 0.3987 -0.4469 5.3259 28 9 -0.4134 -1.2942 4.6567 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 2.2491 -1.6318 -1.1525 33 1 2.8266 -1.5950 -3.4140 34 1 2.6883 -0.1701 -4.2933 35 1 1.1493 0.5391 2.5435 36 1 3.2845 -0.9410 3.6510 37 1 1.8309 -1.9682 3.6507 38 1 3.5303 0.8059 5.2197 39 1 2.7069 1.9728 7.2247 40 1 -0.8065 1.9421 8.2868 41 1 0.7714 2.7463 8.4643 42 1 0.9981 0.1130 9.4595 43 1 1.2585 -1.0519 12.5743 44 1 -1.0702 0.0377 6.8050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755901114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:09 Heat of formation + Delta-G solvation = -107.981656 kcal Electronic energy + Delta-G solvation = -27956.765801 eV Core-core repulsion = 23629.431937 eV Total energy + Delta-G solvation = -4327.333865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94719 -41.54889 -40.57945 -40.06999 -37.01148 -36.06786 -35.87196 -34.72495 -33.78827 -32.16949 -31.55081 -30.94880 -28.53188 -26.37391 -25.28462 -24.17997 -23.81084 -22.32828 -21.98112 -21.37500 -19.81964 -19.38854 -18.77048 -17.96069 -17.67493 -17.55692 -17.30149 -16.73731 -16.66667 -16.49239 -16.31842 -15.92553 -15.62521 -15.46235 -15.23436 -15.14273 -14.91425 -14.67543 -14.50071 -14.19798 -13.72413 -13.62618 -13.37285 -13.35656 -13.11139 -12.91107 -12.75962 -12.67995 -12.52590 -12.16674 -11.95309 -11.76083 -11.52732 -11.12677 -10.98382 -10.73115 -10.26536 -10.14564 -9.93083 -9.64781 -9.03234 -7.95509 -5.25750 -0.00801 0.22675 1.42625 1.49299 1.50572 1.59095 1.62750 2.10723 2.24687 2.53517 2.67042 3.17944 3.38577 3.43282 3.50003 3.65528 3.70267 3.91341 4.01661 4.09923 4.14273 4.22408 4.33130 4.52571 4.55978 4.64100 4.75464 4.77129 4.82666 4.96525 5.05232 5.15664 5.16438 5.20586 5.31065 5.32110 5.49434 5.64366 5.81976 5.88002 6.02800 6.25134 6.35354 6.98219 7.03847 7.32417 7.60549 8.04425 8.28682 9.27581 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034778 B = 0.001758 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.918788 B =15919.148375 C =15977.746235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.115 0.885 4 N -0.724 5.724 5 C 0.705 3.295 6 N -0.847 5.847 7 O -0.638 6.638 8 C 0.518 3.482 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.172 3.828 12 C -0.143 4.143 13 C -0.062 4.062 14 C -0.116 4.116 15 C -0.054 4.054 16 C 0.184 3.816 17 N -0.739 5.739 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.073 4.073 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.267 1.267 26 C -0.150 4.150 27 C 0.106 3.894 28 F -0.141 7.141 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.413 0.587 34 H 0.423 0.577 35 H 0.415 0.585 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.140 0.860 40 H 0.033 0.967 41 H 0.042 0.958 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -0.004 -29.053 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.133 0.867 4 N -0.382 5.382 5 C 0.403 3.597 6 N -0.416 5.416 7 O -0.520 6.520 8 C 0.304 3.696 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.049 3.951 12 C -0.144 4.144 13 C -0.080 4.080 14 C -0.135 4.135 15 C -0.054 4.054 16 C 0.058 3.942 17 N -0.382 5.382 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.169 4.169 27 C 0.087 3.913 28 F -0.120 7.120 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.244 0.756 34 H 0.256 0.744 35 H 0.251 0.749 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.182 0.818 39 H 0.157 0.843 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.809 0.351 -28.916 29.054 hybrid contribution -0.408 -0.774 0.956 1.296 sum 2.401 -0.423 -27.960 28.066 Atomic orbital electron populations 1.22130 0.91674 1.03394 1.04180 1.20572 0.96264 0.97456 0.81912 0.86688 1.44729 1.71173 1.14623 1.07696 1.16054 0.77907 0.84408 0.81373 1.42774 1.71877 1.15773 1.11128 1.90949 1.59390 1.16246 1.85439 1.20749 0.79581 0.84182 0.85136 1.90697 1.39336 1.27597 1.86981 1.45887 1.53354 1.32249 1.04424 1.20005 1.00066 0.95023 0.79972 1.19814 0.92683 1.02228 0.99710 1.21204 1.00303 0.93062 0.93414 1.21346 0.94702 1.00703 0.96752 1.19990 0.94497 0.95796 0.95163 1.19810 0.97753 0.93369 0.83249 1.42511 1.71740 1.22271 1.01702 1.19667 1.30724 1.02594 0.84935 0.90172 1.25586 1.02040 0.97255 1.01694 1.69830 1.48606 1.13913 1.29533 0.85120 0.76956 0.78041 0.79494 1.21529 1.22299 1.19168 1.21087 1.01803 0.98693 0.95324 1.17545 0.88965 0.92175 0.92654 1.91481 1.72517 1.68562 1.79405 0.89369 0.91287 0.91643 0.75040 0.75594 0.74407 0.74860 0.88839 0.91167 0.81789 0.84264 0.94913 0.93978 0.79422 0.94002 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.38 71.98 0.68 -1.27 16 2 C 0.15 2.20 2.98 44.25 0.13 2.33 16 3 H 0.12 1.80 7.58 -2.38 -0.02 1.79 16 4 N -0.72 -10.56 4.96 -461.40 -2.29 -12.85 16 5 C 0.70 11.90 8.80 179.05 1.58 13.47 16 6 N -0.85 -6.80 8.88 -184.74 -1.64 -8.44 16 7 O -0.64 -16.26 16.84 -3.98 -0.07 -16.33 16 8 C 0.52 9.09 7.22 87.66 0.63 9.72 16 9 O -0.57 -13.38 15.84 -3.03 -0.05 -13.43 16 10 N -0.71 -10.84 5.44 -466.79 -2.54 -13.38 16 11 C 0.17 3.14 5.52 85.63 0.47 3.61 16 12 C -0.14 -2.97 5.25 -19.82 -0.10 -3.07 16 13 C -0.06 -1.22 9.67 22.26 0.22 -1.01 16 14 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 15 C -0.05 -1.65 5.25 -19.87 -0.10 -1.75 16 16 C 0.18 6.91 6.38 85.63 0.55 7.46 16 17 N -0.74 -36.43 5.59 -347.18 -1.94 -38.37 16 18 C -0.25 -13.46 9.99 84.03 0.84 -12.62 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 21 N -0.97 -58.59 13.06 21.65 0.28 -58.30 16 22 Si 0.98 45.21 29.55 68.60 2.03 47.24 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.15 -4.38 9.68 22.31 0.22 -4.16 16 27 C 0.11 2.70 7.25 22.38 0.16 2.86 16 28 F -0.14 -3.66 16.66 44.97 0.75 -2.91 16 29 H 0.09 0.84 7.56 -2.39 -0.02 0.82 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.41 5.13 7.80 -92.71 -0.72 4.41 16 33 H 0.41 0.94 8.84 -92.71 -0.82 0.12 16 34 H 0.42 2.52 8.93 -92.71 -0.83 1.69 16 35 H 0.41 4.89 7.88 -92.71 -0.73 4.16 16 36 H 0.09 1.57 8.00 -2.39 -0.02 1.55 16 37 H 0.07 1.48 7.95 -2.39 -0.02 1.46 16 38 H 0.16 2.23 8.04 -2.91 -0.02 2.20 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.03 1.22 8.09 -2.38 -0.02 1.20 16 41 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 42 H 0.37 19.94 7.66 -92.71 -0.71 19.23 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -74.75 385.68 -2.23 -76.98 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -2.71 Total: 30.63 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.94 Total: 9.17 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -8.13 Total: -131.35 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.12 Total: -29.76 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.75 Total: -2.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.75 -2.23 -76.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755901114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.006 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds