Wall clock time and date at job start Tue Mar 31 2020 20:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 5 5 C 1.34768 * 120.00056 * 275.00296 * 4 2 1 6 6 O 1.21278 * 120.00079 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00177 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47331 * 179.97438 * 7 5 4 9 9 C 1.76197 * 99.99778 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00579 * 0.02562 * 9 8 7 11 11 C 1.38806 * 119.99871 * 179.97438 * 9 8 7 12 12 N 1.31633 * 119.99555 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 119.99966 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47537 * 90.00328 * 13 11 9 15 15 H 1.48508 * 109.47122 * 210.00248 * 13 11 9 16 16 H 1.48498 * 109.47446 * 329.99887 * 13 11 9 17 17 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 18 18 C 1.53947 * 113.74128 * 156.67655 * 17 2 1 19 19 N 1.47590 * 86.11442 * 222.04674 * 18 17 2 20 20 C 1.34771 * 134.49049 * 204.64150 * 19 18 17 21 21 O 1.21617 * 119.99769 * 179.97438 * 20 19 18 22 22 C 1.47103 * 120.00316 * 0.02562 * 20 19 18 23 23 C 1.32986 * 119.99974 * 180.02562 * 22 20 19 24 24 C 1.51404 * 136.32216 * 359.62169 * 23 22 20 25 25 C 1.53373 * 87.52403 * 206.05987 * 24 23 22 26 26 C 1.51412 * 136.31214 * 179.97438 * 23 22 20 27 27 C 1.47581 * 91.01390 * 24.63625 * 19 18 17 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99547 * 95.00125 * 4 2 1 32 32 H 1.08996 * 109.47135 * 300.00342 * 7 5 4 33 33 H 1.09000 * 109.46519 * 60.00292 * 7 5 4 34 34 H 0.97005 * 119.99153 * 179.97438 * 12 11 9 35 35 H 1.08995 * 112.93899 * 288.40611 * 17 2 1 36 36 H 1.08998 * 113.76691 * 336.34367 * 18 17 2 37 37 H 1.08991 * 113.77245 * 107.74428 * 18 17 2 38 38 H 1.08005 * 119.99755 * 359.97438 * 22 20 19 39 39 H 1.09003 * 113.55547 * 320.64653 * 24 23 22 40 40 H 1.09005 * 113.56031 * 91.37168 * 24 23 22 41 41 H 1.08997 * 113.97210 * 220.29285 * 25 24 23 42 42 H 1.08998 * 113.60016 * 88.79027 * 25 24 23 43 43 H 1.08995 * 113.56325 * 268.62062 * 26 23 22 44 44 H 1.08994 * 113.56268 * 39.28498 * 26 23 22 45 45 H 1.08998 * 113.76987 * 221.05973 * 27 19 18 46 46 H 1.09004 * 113.86349 * 89.67639 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6490 -0.7289 3.5877 8 16 2.7107 0.4343 4.9731 9 6 3.3139 -0.6310 6.2403 10 1 3.5232 -1.6675 6.0203 11 6 3.5210 -0.1379 7.5212 12 7 3.2663 1.1254 7.7891 13 14 4.1611 -1.2671 8.8644 14 1 5.6455 -1.2286 8.8779 15 1 3.6423 -0.8147 10.1804 16 1 3.7043 -2.6557 8.6033 17 6 2.0400 -0.7212 -1.2494 18 6 3.4666 -0.3145 -1.6608 19 7 2.9583 -0.3117 -3.0464 20 6 3.5237 -0.4650 -4.2601 21 8 2.8362 -0.4142 -5.2620 22 6 4.9723 -0.6949 -4.3731 23 6 5.5302 -0.8456 -5.5708 24 6 5.0529 -0.8563 -7.0076 25 6 6.2658 -1.7364 -7.3341 26 6 6.9255 -1.0895 -6.1058 27 6 1.5823 -0.0739 -2.5689 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6318 1.1525 32 1 1.9762 -1.5508 3.8325 33 1 3.6481 -1.1213 3.3984 34 1 3.4108 1.4699 8.6844 35 1 1.8828 -1.7991 -1.2116 36 1 3.7640 0.6702 -1.3000 37 1 4.2152 -1.0831 -1.4689 38 1 5.5828 -0.7404 -3.4833 39 1 4.0983 -1.3640 -7.1457 40 1 5.0844 0.1234 -7.4845 41 1 6.7524 -1.4876 -8.2772 42 1 6.0741 -2.8033 -7.2204 43 1 7.4703 -0.1738 -6.3356 44 1 7.5072 -1.7875 -5.5038 45 1 0.8264 -0.6505 -3.1021 46 1 1.3244 0.9810 -2.4746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756129804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:02 Heat of formation + Delta-G solvation = -0.428330 kcal Electronic energy + Delta-G solvation = -25545.181054 eV Core-core repulsion = 21756.431477 eV Total energy + Delta-G solvation = -3788.749577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85135 -39.56867 -38.94496 -37.76068 -35.01938 -32.44930 -31.91259 -31.17300 -29.06900 -28.42899 -26.57984 -26.18180 -25.50420 -24.27982 -23.05235 -20.88683 -20.44021 -19.67628 -18.24299 -17.89503 -17.44185 -16.81207 -16.35471 -16.21624 -15.86968 -15.20018 -15.04606 -14.91566 -14.82307 -14.24018 -13.97769 -13.86126 -13.50925 -13.19030 -13.01829 -12.88513 -12.77752 -12.61581 -12.46537 -12.34911 -12.11760 -11.98000 -11.74562 -11.44961 -11.14537 -11.09271 -11.05252 -11.03999 -10.90028 -10.77154 -9.94458 -9.83273 -9.61223 -9.42656 -9.09275 -8.99653 -8.92366 -8.26064 -6.52280 -6.23864 -3.94439 1.00608 2.45313 2.95541 3.03615 3.05649 3.20616 3.25840 3.29446 3.60979 3.78716 4.00533 4.06129 4.18442 4.29605 4.42963 4.50609 4.67316 4.71557 4.83808 5.01349 5.08471 5.09819 5.11463 5.15242 5.17849 5.19057 5.24102 5.27508 5.33481 5.34797 5.39098 5.52569 5.63346 5.65389 5.74027 5.79307 5.85955 5.89287 5.97102 6.11189 6.16392 6.24325 6.60307 7.38103 7.57482 7.66509 7.92208 8.33017 8.57658 9.21641 10.83513 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.001797 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.118951 B =15579.793169 C =16733.634881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.734 5.734 5 C 0.534 3.466 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.130 4.130 18 C 0.107 3.893 19 N -0.644 5.644 20 C 0.574 3.426 21 O -0.545 6.545 22 C -0.195 4.195 23 C -0.062 4.062 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.109 4.109 27 C 0.120 3.880 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -7.049 -27.066 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.389 5.389 5 C 0.320 3.680 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.149 4.149 18 C -0.016 4.016 19 N -0.379 5.379 20 C 0.367 3.633 21 O -0.424 6.424 22 C -0.216 4.216 23 C -0.064 4.064 24 C -0.143 4.143 25 C -0.180 4.180 26 C -0.146 4.146 27 C -0.003 4.003 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.327 -4.924 -27.574 28.107 hybrid contribution 0.938 -2.538 1.022 2.893 sum 3.265 -7.462 -26.552 27.773 Atomic orbital electron populations 1.22188 0.94930 1.02314 1.02893 1.20828 0.94394 0.97292 0.82698 0.88934 1.46065 1.69486 1.13919 1.09403 1.20301 0.76759 0.87216 0.83722 1.90705 1.48213 1.15766 1.84358 1.23538 1.03659 1.04883 0.98394 1.85399 1.86322 1.12817 0.98816 1.22868 1.50993 0.98160 0.96418 0.90935 1.24992 0.95087 0.95539 0.97954 1.70020 1.45447 1.13217 1.21563 0.86172 0.78999 0.80192 0.80162 1.20280 1.20746 1.19708 1.23466 0.95855 1.01639 0.93978 1.23367 0.97084 1.02430 0.78685 1.49862 1.11007 1.71788 1.05226 1.18084 0.87737 0.76296 0.81226 1.90775 1.64431 1.51988 1.35212 1.21496 0.93674 1.09341 0.97081 1.23504 0.98085 0.90230 0.94557 1.22233 0.99367 1.00801 0.91900 1.22736 0.97404 0.99734 0.98106 1.22370 0.93741 1.01574 0.96877 1.23121 0.85253 1.01204 0.90707 0.91359 0.92370 0.91765 0.76839 0.89245 0.89245 0.92176 0.87380 0.88963 0.89631 0.85056 0.89561 0.88389 0.90292 0.89697 0.88004 0.90255 0.89666 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.29 37.16 0.35 -1.21 16 2 C 0.15 1.47 2.42 -67.93 -0.16 1.31 16 3 H 0.09 1.06 7.37 -51.93 -0.38 0.68 16 4 N -0.73 -8.31 5.08 -53.81 -0.27 -8.58 16 5 C 0.53 9.08 7.81 -10.99 -0.09 8.99 16 6 O -0.52 -10.92 15.52 5.56 0.09 -10.83 16 7 C -0.15 -2.93 6.16 36.01 0.22 -2.70 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 9 C -0.54 -14.96 9.50 30.94 0.29 -14.67 16 10 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 13 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.13 -0.92 3.50 -89.69 -0.31 -1.23 16 18 C 0.11 0.79 8.02 -2.97 -0.02 0.77 16 19 N -0.64 -6.11 3.61 -179.75 -0.65 -6.76 16 20 C 0.57 6.64 7.99 -12.67 -0.10 6.54 16 21 O -0.54 -8.01 15.88 5.26 0.08 -7.93 16 22 C -0.20 -1.79 9.81 -37.81 -0.37 -2.16 16 23 C -0.06 -0.52 6.93 -100.48 -0.70 -1.22 16 24 C -0.11 -0.85 6.99 -27.56 -0.19 -1.04 16 25 C -0.14 -0.80 8.17 -26.18 -0.21 -1.01 16 26 C -0.11 -0.62 7.96 -27.39 -0.22 -0.83 16 27 C 0.12 0.96 7.46 -2.98 -0.02 0.94 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.49 7.43 -51.93 -0.39 0.11 16 31 H 0.40 3.37 8.60 -40.82 -0.35 3.02 16 32 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 33 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.70 7.96 -51.93 -0.41 0.29 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.13 0.95 7.90 -52.48 -0.41 0.53 16 39 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -36.14 400.87 -10.22 -46.36 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.37 Total: 0.06 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.64 Total: -5.56 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.19 Total: -40.39 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.14 -10.22 -46.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756129804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.930 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds