Wall clock time and date at job start Tue Mar 31 2020 21:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36217 * 116.99594 * 2 1 4 4 C 1.34075 * 122.50061 * 359.71572 * 3 2 1 5 5 S 1.70607 * 110.97517 * 179.88709 * 4 3 2 6 6 C 1.75818 * 91.61906 * 0.31517 * 5 4 3 7 7 C 1.46545 * 125.42798 * 179.82408 * 6 5 4 8 8 O 1.21709 * 119.99834 * 134.78231 * 7 6 5 9 9 N 1.34773 * 120.00073 * 314.79003 * 7 6 5 10 10 C 1.46926 * 120.62595 * 3.58752 * 9 7 6 11 11 C 1.53197 * 108.77480 * 233.58558 * 10 9 7 12 12 C 1.53043 * 109.31470 * 305.36943 * 11 10 9 13 13 C 1.53040 * 109.53507 * 61.36042 * 12 11 10 14 14 H 1.09007 * 109.49711 * 58.59135 * 13 12 11 15 15 C 1.53001 * 109.49584 * 178.64837 * 13 12 11 16 16 C 1.53000 * 109.47249 * 185.00015 * 15 13 12 17 17 N 1.46505 * 109.47035 * 180.02562 * 16 15 13 18 18 C 1.36938 * 119.99811 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00197 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00028 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00222 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47339 * 89.99709 * 22 20 18 24 24 H 1.48497 * 109.47241 * 209.99630 * 22 20 18 25 25 H 1.48502 * 109.47069 * 329.99975 * 22 20 18 26 26 C 1.46924 * 120.63320 * 183.31099 * 9 7 6 27 27 C 1.36744 * 109.14389 * 359.82212 * 6 5 4 28 28 H 1.08989 * 109.47432 * 59.99429 * 1 2 3 29 29 H 1.09004 * 109.46855 * 299.99002 * 1 2 3 30 30 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08006 * 124.51631 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.59519 * 353.37383 * 10 9 7 33 33 H 1.09003 * 109.58378 * 113.66437 * 10 9 7 34 34 H 1.08996 * 109.49723 * 65.32055 * 11 10 9 35 35 H 1.09001 * 109.50033 * 185.41484 * 11 10 9 36 36 H 1.08999 * 109.45758 * 181.38515 * 12 11 10 37 37 H 1.09003 * 109.45828 * 301.35648 * 12 11 10 38 38 H 1.09003 * 109.47472 * 305.00653 * 15 13 12 39 39 H 1.09004 * 109.46557 * 65.00043 * 15 13 12 40 40 H 1.08990 * 109.47475 * 300.00416 * 16 15 13 41 41 H 1.09002 * 109.46607 * 60.00703 * 16 15 13 42 42 H 0.96997 * 120.00038 * 0.02562 * 17 16 15 43 43 H 0.97002 * 120.00065 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.58786 * 246.19887 * 26 9 7 45 45 H 1.08998 * 109.58365 * 6.62463 * 26 9 7 46 46 H 1.07999 * 123.36950 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3689 -0.0056 5 16 2.4294 3.7037 -0.0008 6 6 3.8353 2.6480 -0.0005 7 6 5.2316 3.0928 -0.0007 8 8 6.0368 2.5703 0.7476 9 7 5.6241 4.0806 -0.8293 10 6 4.6489 4.7744 -1.6815 11 6 5.1342 4.7173 -3.1335 12 6 6.5543 5.2819 -3.2152 13 6 7.4936 4.4304 -2.3579 14 1 7.4709 3.3985 -2.7085 15 6 8.9191 4.9755 -2.4669 16 6 9.8772 4.0524 -1.7114 17 7 11.2421 4.5747 -1.8153 18 6 12.2771 3.9101 -1.2135 19 1 12.0874 3.0007 -0.6625 20 6 13.5703 4.4046 -1.3123 21 7 14.5652 3.7656 -0.7343 22 14 13.8987 5.9770 -2.2657 23 1 13.7886 7.1423 -1.3518 24 1 15.2656 5.9290 -2.8440 25 1 12.9028 6.1099 -3.3593 26 6 7.0342 4.4882 -0.8932 27 6 3.4183 1.3457 -0.0001 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2894 2.4445 -0.0109 32 1 3.6788 4.2840 -1.6010 33 1 4.5605 5.8135 -1.3643 34 1 5.1337 3.6828 -3.4767 35 1 4.4702 5.3101 -3.7627 36 1 6.8927 5.2651 -4.2511 37 1 6.5586 6.3083 -2.8483 38 1 9.2111 5.0222 -3.5161 39 1 8.9600 5.9749 -2.0336 40 1 9.5853 4.0057 -0.6624 41 1 9.8363 3.0531 -2.1448 42 1 11.4126 5.3912 -2.3104 43 1 15.4689 4.1114 -0.8031 44 1 7.1382 5.5050 -0.5146 45 1 7.6385 3.8088 -0.2921 46 1 4.0961 0.5049 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715149607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:21 Heat of formation + Delta-G solvation = -24.694518 kcal Electronic energy + Delta-G solvation = -26668.531264 eV Core-core repulsion = 22878.729426 eV Total energy + Delta-G solvation = -3789.801838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59704 -40.02138 -37.97045 -36.15034 -35.52183 -33.60889 -32.23217 -31.03927 -29.95297 -28.38909 -27.81915 -26.12552 -24.42172 -23.91765 -22.37633 -21.40133 -20.85583 -20.07342 -19.38473 -18.52284 -17.52612 -17.44140 -16.78260 -16.25339 -16.18991 -15.48224 -15.00955 -14.94404 -14.62323 -14.41258 -14.11714 -13.80004 -13.60657 -13.47468 -13.35651 -13.24346 -12.98892 -12.85134 -12.69451 -12.30777 -12.12804 -11.63779 -11.55766 -11.44700 -11.30549 -11.19571 -11.06080 -10.90032 -10.63312 -10.54333 -10.25044 -10.13130 -9.98963 -9.52637 -9.30943 -8.83062 -8.81388 -8.34007 -7.16409 -5.70470 -3.05771 0.17238 0.94288 1.46115 2.09208 2.50024 2.87675 3.02509 3.40906 3.43328 3.48495 4.19023 4.45331 4.52540 4.55368 4.64187 4.66194 4.69994 4.71949 4.85541 4.85804 5.01003 5.02447 5.15550 5.27589 5.35518 5.45880 5.52674 5.53707 5.55653 5.61292 5.65532 5.70066 5.82085 5.86242 5.93372 6.02887 6.12695 6.22027 6.28239 6.40370 6.78793 6.81790 6.84179 7.12281 7.89388 8.07129 8.48656 9.28071 10.00219 10.20275 11.48114 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.002223 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.044539 B =12594.900302 C =13362.502946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.110 3.890 4 C -0.357 4.357 5 S 0.237 5.763 6 C -0.228 4.228 7 C 0.587 3.413 8 O -0.514 6.514 9 N -0.602 5.602 10 C 0.091 3.909 11 C -0.132 4.132 12 C -0.116 4.116 13 C -0.096 4.096 14 H 0.077 0.923 15 C -0.122 4.122 16 C 0.154 3.846 17 N -0.757 5.757 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.001 3.999 21 N -0.935 5.935 22 Si 0.886 3.114 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.115 3.885 27 C -0.078 4.078 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.170 0.830 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.026 0.974 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.651 1.153 -3.386 35.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C 0.053 3.947 4 C -0.494 4.494 5 S 0.503 5.497 6 C -0.349 4.349 7 C 0.373 3.627 8 O -0.390 6.390 9 N -0.335 5.335 10 C -0.033 4.033 11 C -0.170 4.170 12 C -0.154 4.154 13 C -0.116 4.116 14 H 0.096 0.904 15 C -0.161 4.161 16 C 0.027 3.973 17 N -0.403 5.403 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.194 4.194 21 N -0.583 5.583 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.006 4.006 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.188 0.812 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.122 0.878 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -35.258 2.060 -2.826 35.431 hybrid contribution 0.058 -0.373 -0.708 0.803 sum -35.200 1.687 -3.534 35.417 Atomic orbital electron populations 1.23052 0.78139 1.04100 1.01255 1.86137 1.21327 1.25144 1.89291 1.17528 0.91450 0.84791 1.00931 1.25153 1.05888 0.97940 1.20451 1.83022 0.91926 1.06192 1.68567 1.24402 0.98027 0.97585 1.14855 1.16936 0.85483 0.79656 0.80653 1.90908 1.53075 1.55583 1.39453 1.48005 1.09740 1.35384 1.40404 1.22172 0.92323 0.97776 0.90980 1.21893 0.97479 1.02335 0.95302 1.21609 0.93883 0.99374 1.00483 1.21541 0.94934 1.00635 0.94457 0.90434 1.21784 0.92918 0.99951 1.01435 1.20704 0.84206 0.95140 0.97287 1.42722 1.03269 1.29504 1.64790 1.19097 0.85841 1.06548 1.25675 0.89203 1.24692 0.95554 0.98664 1.00534 1.69711 0.99355 1.40579 1.48704 0.86515 0.77130 0.84576 0.80116 1.21122 1.21789 1.20394 1.21996 0.79564 1.01504 0.97568 1.19898 0.93061 0.96621 1.01600 0.92732 0.92722 0.88035 0.81241 0.89567 0.90657 0.91273 0.90539 0.91290 0.91583 0.91514 0.91760 0.95270 0.95642 0.80770 0.93133 0.90898 0.87824 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.93 101.05 1.00 1.15 16 2 O -0.30 -2.79 10.56 -20.43 -0.22 -3.01 16 3 C 0.11 1.04 6.61 -41.23 -0.27 0.77 16 4 C -0.36 -2.67 9.81 29.27 0.29 -2.38 16 5 S 0.24 1.77 19.89 -107.50 -2.14 -0.37 16 6 C -0.23 -2.49 5.48 -36.78 -0.20 -2.70 16 7 C 0.59 7.96 7.54 -12.91 -0.10 7.87 16 8 O -0.51 -9.12 16.51 5.18 0.09 -9.04 16 9 N -0.60 -6.93 2.97 -174.10 -0.52 -7.45 16 10 C 0.09 0.73 5.88 -3.71 -0.02 0.71 16 11 C -0.13 -0.99 6.08 -26.61 -0.16 -1.16 16 12 C -0.12 -1.05 5.17 -26.69 -0.14 -1.19 16 13 C -0.10 -1.15 2.35 -90.28 -0.21 -1.36 16 14 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 15 C -0.12 -1.80 4.80 -26.73 -0.13 -1.92 16 16 C 0.15 3.05 6.03 -4.04 -0.02 3.02 16 17 N -0.76 -18.65 5.41 -59.91 -0.32 -18.97 16 18 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 19 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 20 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 21 N -0.94 -30.22 13.97 55.49 0.78 -29.44 16 22 Si 0.89 22.58 27.74 -169.99 -4.71 17.87 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 26 C 0.11 1.47 5.35 -3.49 -0.02 1.45 16 27 C -0.08 -0.85 10.23 -40.31 -0.41 -1.26 16 28 H 0.05 0.20 7.83 -51.94 -0.41 -0.20 16 29 H 0.05 0.22 7.85 -51.93 -0.41 -0.19 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.17 0.85 6.96 -52.48 -0.37 0.49 16 32 H 0.09 0.61 4.00 -30.25 -0.12 0.49 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.60 6.70 -51.93 -0.35 0.25 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.36 8.52 5.53 -40.82 -0.23 8.30 16 43 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 1.62 5.75 -51.93 -0.30 1.32 16 46 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -35.91 377.62 -8.85 -44.76 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.84 Total: 4.30 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.65 Total: -4.34 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.07 Total: -55.86 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.13 Total: -12.04 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.14 Total: -0.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.91 -8.85 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715149607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.067 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds