Wall clock time and date at job start Tue Mar 31 2020 21:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36217 * 116.99594 * 2 1 4 4 C 1.34075 * 122.50061 * 359.71572 * 3 2 1 5 5 S 1.70607 * 110.97517 * 179.88709 * 4 3 2 6 6 C 1.75818 * 91.61906 * 0.31517 * 5 4 3 7 7 C 1.46545 * 125.42798 * 179.82408 * 6 5 4 8 8 O 1.21709 * 119.99834 * 134.78231 * 7 6 5 9 9 N 1.34773 * 120.00073 * 314.79003 * 7 6 5 10 10 C 1.46926 * 120.62595 * 3.58752 * 9 7 6 11 11 C 1.53197 * 108.77480 * 233.58558 * 10 9 7 12 12 C 1.53043 * 109.31470 * 305.36943 * 11 10 9 13 13 C 1.53040 * 109.53507 * 61.36042 * 12 11 10 14 14 H 1.09007 * 109.49711 * 58.59135 * 13 12 11 15 15 C 1.53001 * 109.49584 * 178.64837 * 13 12 11 16 16 C 1.53000 * 109.47249 * 185.00015 * 15 13 12 17 17 N 1.46505 * 109.47035 * 180.02562 * 16 15 13 18 18 C 1.36938 * 119.99811 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00197 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00028 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00222 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47339 * 89.99709 * 22 20 18 24 24 H 1.48497 * 109.47241 * 209.99630 * 22 20 18 25 25 H 1.48502 * 109.47069 * 329.99975 * 22 20 18 26 26 C 1.46924 * 120.63320 * 183.31099 * 9 7 6 27 27 C 1.36744 * 109.14389 * 359.82212 * 6 5 4 28 28 H 1.08989 * 109.47432 * 59.99429 * 1 2 3 29 29 H 1.09004 * 109.46855 * 299.99002 * 1 2 3 30 30 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08006 * 124.51631 * 359.97438 * 4 3 2 32 32 H 1.08997 * 109.59519 * 353.37383 * 10 9 7 33 33 H 1.09003 * 109.58378 * 113.66437 * 10 9 7 34 34 H 1.08996 * 109.49723 * 65.32055 * 11 10 9 35 35 H 1.09001 * 109.50033 * 185.41484 * 11 10 9 36 36 H 1.08999 * 109.45758 * 181.38515 * 12 11 10 37 37 H 1.09003 * 109.45828 * 301.35648 * 12 11 10 38 38 H 1.09003 * 109.47472 * 305.00653 * 15 13 12 39 39 H 1.09004 * 109.46557 * 65.00043 * 15 13 12 40 40 H 1.08990 * 109.47475 * 300.00416 * 16 15 13 41 41 H 1.09002 * 109.46607 * 60.00703 * 16 15 13 42 42 H 0.96997 * 120.00038 * 0.02562 * 17 16 15 43 43 H 0.97002 * 120.00065 * 180.02562 * 21 20 18 44 44 H 1.08993 * 109.58786 * 246.19887 * 26 9 7 45 45 H 1.08998 * 109.58365 * 6.62463 * 26 9 7 46 46 H 1.07999 * 123.36950 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3689 -0.0056 5 16 2.4294 3.7037 -0.0008 6 6 3.8353 2.6480 -0.0005 7 6 5.2316 3.0928 -0.0007 8 8 6.0368 2.5703 0.7476 9 7 5.6241 4.0806 -0.8293 10 6 4.6489 4.7744 -1.6815 11 6 5.1342 4.7173 -3.1335 12 6 6.5543 5.2819 -3.2152 13 6 7.4936 4.4304 -2.3579 14 1 7.4709 3.3985 -2.7085 15 6 8.9191 4.9755 -2.4669 16 6 9.8772 4.0524 -1.7114 17 7 11.2421 4.5747 -1.8153 18 6 12.2771 3.9101 -1.2135 19 1 12.0874 3.0007 -0.6625 20 6 13.5703 4.4046 -1.3123 21 7 14.5652 3.7656 -0.7343 22 14 13.8987 5.9770 -2.2657 23 1 13.7886 7.1423 -1.3518 24 1 15.2656 5.9290 -2.8440 25 1 12.9028 6.1099 -3.3593 26 6 7.0342 4.4882 -0.8932 27 6 3.4183 1.3457 -0.0001 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2894 2.4445 -0.0109 32 1 3.6788 4.2840 -1.6010 33 1 4.5605 5.8135 -1.3643 34 1 5.1337 3.6828 -3.4767 35 1 4.4702 5.3101 -3.7627 36 1 6.8927 5.2651 -4.2511 37 1 6.5586 6.3083 -2.8483 38 1 9.2111 5.0222 -3.5161 39 1 8.9600 5.9749 -2.0336 40 1 9.5853 4.0057 -0.6624 41 1 9.8363 3.0531 -2.1448 42 1 11.4126 5.3912 -2.3104 43 1 15.4689 4.1114 -0.8031 44 1 7.1382 5.5050 -0.5146 45 1 7.6385 3.8088 -0.2921 46 1 4.0961 0.5049 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715149607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:20 Heat of formation + Delta-G solvation = -49.671827 kcal Electronic energy + Delta-G solvation = -26669.614362 eV Core-core repulsion = 22878.729426 eV Total energy + Delta-G solvation = -3790.884936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49334 -40.69962 -38.99516 -37.12908 -36.86756 -35.06889 -33.56705 -32.63542 -30.83240 -29.26670 -28.76018 -26.97152 -25.82531 -24.77956 -23.86758 -22.39569 -22.12039 -20.97889 -20.13613 -19.67679 -19.28293 -18.13037 -17.66453 -17.12894 -16.80070 -16.64363 -16.36832 -15.95546 -15.83662 -15.53202 -15.24993 -14.96597 -14.81898 -14.69080 -14.35191 -14.13265 -14.00639 -13.73550 -13.72492 -13.64926 -13.09738 -12.88560 -12.66130 -12.61273 -12.38153 -12.15767 -12.07100 -11.94347 -11.91966 -11.82598 -11.73607 -11.59903 -11.24335 -11.11214 -10.96291 -10.05000 -9.72697 -9.32781 -8.95027 -8.04677 -5.39804 -0.57974 0.23803 0.80858 1.31654 1.36494 1.42598 1.50024 1.61903 1.97962 2.44954 2.47829 3.25648 3.38581 3.50233 3.81299 3.86659 3.88288 3.93072 4.06340 4.10176 4.28662 4.35013 4.37525 4.41263 4.45392 4.46536 4.57320 4.64045 4.69897 4.74092 4.77860 4.82475 4.84552 4.91328 4.99617 5.04870 5.13494 5.22611 5.29977 5.36173 5.43425 5.51832 5.72567 6.18752 6.19385 6.26304 6.90500 7.05665 7.80258 8.02940 9.17174 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.002223 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.044539 B =12594.900302 C =13362.502946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.091 3.909 4 C -0.341 4.341 5 S 0.311 5.689 6 C -0.261 4.261 7 C 0.581 3.419 8 O -0.576 6.576 9 N -0.597 5.597 10 C 0.084 3.916 11 C -0.127 4.127 12 C -0.110 4.110 13 C -0.087 4.087 14 H 0.061 0.939 15 C -0.108 4.108 16 C 0.150 3.850 17 N -0.757 5.757 18 C -0.243 4.243 19 H 0.046 0.954 20 C -0.070 4.070 21 N -0.986 5.986 22 Si 0.967 3.033 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.246 1.246 26 C 0.114 3.886 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.201 0.799 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.017 0.983 41 H 0.011 0.989 42 H 0.369 0.631 43 H 0.259 0.741 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -39.429 4.742 -5.751 40.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.034 3.966 4 C -0.479 4.479 5 S 0.578 5.422 6 C -0.382 4.382 7 C 0.368 3.632 8 O -0.457 6.457 9 N -0.328 5.328 10 C -0.038 4.038 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.107 4.107 14 H 0.079 0.921 15 C -0.146 4.146 16 C 0.024 3.976 17 N -0.403 5.403 18 C -0.374 4.374 19 H 0.064 0.936 20 C -0.261 4.261 21 N -0.636 5.636 22 Si 0.792 3.208 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.170 1.170 26 C -0.008 4.008 27 C -0.128 4.128 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.218 0.782 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.203 0.797 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -39.120 5.681 -5.237 39.875 hybrid contribution 1.128 -1.592 0.102 1.954 sum -37.991 4.089 -5.135 38.554 Atomic orbital electron populations 1.23350 0.76011 1.05592 1.02453 1.86107 1.23606 1.25263 1.89558 1.17445 0.90878 0.85770 1.02461 1.25575 1.07473 0.97273 1.17555 1.82654 0.88873 1.04237 1.66466 1.24203 0.98105 0.98790 1.17071 1.17390 0.86298 0.79389 0.80095 1.90864 1.55014 1.57700 1.42085 1.48107 1.09834 1.34841 1.40067 1.22527 0.91739 0.98726 0.90814 1.21900 0.97136 1.02314 0.95170 1.21590 0.93703 0.99363 1.00116 1.21442 0.94284 1.00492 0.94474 0.92097 1.21665 0.92789 0.99120 1.01028 1.20862 0.83390 0.95908 0.97481 1.42681 1.03807 1.29508 1.64338 1.19034 0.87632 1.05489 1.25284 0.93603 1.25682 0.95004 1.03240 1.02161 1.69921 0.99910 1.43040 1.50730 0.85244 0.77346 0.78997 0.79175 1.20018 1.22018 1.17031 1.21874 0.80168 1.01066 0.97675 1.19920 0.94107 0.96384 1.02401 0.91245 0.91614 0.86653 0.78158 0.88570 0.88101 0.92383 0.87089 0.90298 0.89920 0.90408 0.90314 0.96534 0.97132 0.79715 0.93213 0.89465 0.91944 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.93 113.37 1.13 1.28 16 2 O -0.33 -5.90 10.56 -96.02 -1.01 -6.92 16 3 C 0.09 1.66 6.61 21.20 0.14 1.80 16 4 C -0.34 -4.13 9.81 66.87 0.66 -3.48 16 5 S 0.31 3.77 19.89 -56.49 -1.12 2.64 16 6 C -0.26 -5.79 5.48 24.09 0.13 -5.65 16 7 C 0.58 16.65 7.54 86.41 0.65 17.31 16 8 O -0.58 -22.58 16.51 -4.38 -0.07 -22.65 16 9 N -0.60 -13.61 2.97 -822.94 -2.44 -16.05 16 10 C 0.08 1.09 5.88 86.36 0.51 1.60 16 11 C -0.13 -1.45 6.08 30.67 0.19 -1.26 16 12 C -0.11 -1.60 5.17 30.62 0.16 -1.44 16 13 C -0.09 -2.00 2.35 -10.57 -0.02 -2.03 16 14 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 15 C -0.11 -3.00 4.80 30.59 0.15 -2.86 16 16 C 0.15 6.12 6.03 86.38 0.52 6.64 16 17 N -0.76 -37.47 5.41 -343.45 -1.86 -39.33 16 18 C -0.24 -14.88 10.47 84.03 0.88 -14.00 16 19 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.99 -65.85 13.97 21.65 0.30 -65.55 16 22 Si 0.97 46.43 27.74 68.60 1.90 48.34 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 26 C 0.11 2.96 5.35 86.51 0.46 3.42 16 27 C -0.09 -2.14 10.23 21.80 0.22 -1.92 16 28 H 0.07 0.32 7.83 -2.39 -0.02 0.30 16 29 H 0.07 0.36 7.85 -2.39 -0.02 0.34 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.20 1.11 6.96 -2.91 -0.02 1.09 16 32 H 0.10 1.05 4.00 -16.17 -0.06 0.99 16 33 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.02 0.73 6.70 -2.39 -0.02 0.71 16 41 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.37 16.77 5.53 -92.71 -0.51 16.26 16 43 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 44 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 2.15 5.75 -2.39 -0.01 2.13 16 46 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -84.69 377.62 2.30 -82.39 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.37 Total: 21.54 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 6.23 Total: -4.42 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -3.99 Total: -120.92 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.09 Total: -29.57 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.34 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -1.12 Total: 2.64 kcal Total: -84.69 2.30 -82.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715149607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.719 kcal (2) G-P(sol) polarization free energy of solvation -84.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds