Wall clock time and date at job start Tue Mar 31 2020 21:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00202 * 2 1 4 4 C 1.50696 * 109.47204 * 180.02562 * 3 2 1 5 5 S 1.70455 * 124.58956 * 269.97518 * 4 3 2 6 6 C 1.75503 * 92.44462 * 180.02562 * 5 4 3 7 7 C 1.32778 * 110.57462 * 359.71443 * 6 5 4 8 8 C 1.36013 * 124.59459 * 89.99923 * 4 3 2 9 9 C 1.47186 * 123.45927 * 359.97438 * 8 4 3 10 10 O 1.21638 * 120.00049 * 0.02562 * 9 8 4 11 11 N 1.34774 * 120.00264 * 180.27327 * 9 8 4 12 12 C 1.46493 * 120.00438 * 179.72458 * 11 9 8 13 13 C 1.52998 * 109.47298 * 175.13205 * 12 11 9 14 14 N 1.46509 * 110.01614 * 303.90108 * 13 12 11 15 15 C 1.36929 * 119.99813 * 301.46516 * 14 13 12 16 16 H 1.07997 * 120.00491 * 354.60423 * 15 14 13 17 17 C 1.38817 * 120.00020 * 174.60320 * 15 14 13 18 18 N 1.31622 * 119.99507 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00496 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46871 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47129 * 119.99858 * 19 17 15 22 22 H 1.48495 * 109.47011 * 240.00214 * 19 17 15 23 23 C 1.54269 * 110.03187 * 182.46423 * 13 12 11 24 24 C 1.54895 * 104.19263 * 217.10118 * 23 13 12 25 25 C 1.54888 * 102.74723 * 37.94442 * 24 23 13 26 26 C 1.53868 * 110.03479 * 65.29447 * 13 12 11 27 27 H 1.08998 * 109.46812 * 60.00300 * 1 2 3 28 28 H 1.09000 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46996 * 300.00281 * 1 2 3 30 30 H 1.09000 * 109.47067 * 59.99659 * 3 2 1 31 31 H 1.08998 * 109.46808 * 300.00049 * 3 2 1 32 32 H 1.08000 * 124.71362 * 180.02562 * 6 5 4 33 33 H 1.07999 * 123.45388 * 180.25007 * 7 6 5 34 34 H 0.97006 * 119.99505 * 359.72661 * 11 9 8 35 35 H 1.08999 * 109.47246 * 295.13274 * 12 11 9 36 36 H 1.09001 * 109.46714 * 55.12890 * 12 11 9 37 37 H 0.97002 * 119.99767 * 121.46113 * 14 13 12 38 38 H 0.97006 * 119.99632 * 180.02562 * 18 17 15 39 39 H 1.09003 * 110.48680 * 335.77954 * 23 13 12 40 40 H 1.08997 * 110.48639 * 98.42774 * 23 13 12 41 41 H 1.08999 * 110.75724 * 279.62405 * 24 23 13 42 42 H 1.08998 * 110.75293 * 156.25690 * 24 23 13 43 43 H 1.09003 * 110.48431 * 203.37646 * 25 24 23 44 44 H 1.08995 * 110.48764 * 80.73085 * 25 24 23 45 45 H 1.08999 * 110.03112 * 238.57019 * 26 13 12 46 46 H 1.08998 * 110.03085 * 0.02562 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 16 4.4778 1.1103 1.4022 6 6 5.9588 0.9935 0.4678 7 6 5.6923 1.0083 -0.8329 8 6 4.2819 1.1256 -1.1206 9 6 3.7329 1.1687 -2.4856 10 8 2.5322 1.2639 -2.6555 11 7 4.5602 1.0978 -3.5472 12 6 4.0133 1.1346 -4.9058 13 6 5.1611 1.1612 -5.9170 14 7 6.0456 2.2964 -5.6420 15 6 5.5460 3.5712 -5.6501 16 1 4.5220 3.7481 -5.9441 17 6 6.3558 4.6364 -5.2803 18 7 7.6039 4.4209 -4.9224 19 14 5.6745 6.3757 -5.2920 20 1 4.2559 6.3487 -5.7302 21 1 5.7590 6.9496 -3.9250 22 1 6.4669 7.2113 -6.2295 23 6 4.6002 1.2624 -7.3506 24 6 5.5510 0.3770 -8.1938 25 6 5.8494 -0.8075 -7.2415 26 6 5.9554 -0.1548 -5.8477 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 6.9490 0.9150 0.8918 33 1 6.4525 0.9431 -1.5972 34 1 5.5177 1.0223 -3.4117 35 1 3.4005 0.2492 -5.0749 36 1 3.4014 2.0285 -5.0269 37 1 6.9851 2.1447 -5.4540 38 1 8.1697 5.1652 -4.6637 39 1 3.5823 0.8745 -7.3902 40 1 4.6300 2.2945 -7.6999 41 1 6.4661 0.9165 -8.4380 42 1 5.0533 0.0290 -9.0990 43 1 6.7909 -1.2860 -7.5112 44 1 5.0333 -1.5296 -7.2634 45 1 6.9991 0.0511 -5.6102 46 1 5.5229 -0.8126 -5.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:54 Heat of formation + Delta-G solvation = -43.100673 kcal Electronic energy + Delta-G solvation = -27942.048710 eV Core-core repulsion = 24151.448721 eV Total energy + Delta-G solvation = -3790.599989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73580 -38.45538 -37.59383 -36.47047 -34.08627 -33.30344 -31.06994 -30.64959 -28.33833 -28.16726 -27.06883 -25.79815 -24.42562 -23.38556 -22.64653 -21.31963 -20.23618 -19.10710 -18.44004 -17.54085 -16.99606 -16.57750 -16.38593 -15.58862 -15.41682 -15.34020 -14.65997 -14.55220 -14.50356 -14.21423 -13.90448 -13.33029 -13.20225 -12.99011 -12.94703 -12.61458 -12.50930 -12.17208 -11.82659 -11.72467 -11.45037 -11.37847 -11.10206 -10.99128 -10.79507 -10.72491 -10.63811 -10.50096 -10.22742 -10.13802 -9.84946 -9.81610 -9.65096 -9.18185 -8.91418 -8.89206 -8.51388 -8.21259 -7.01174 -5.81307 -3.09759 0.80977 1.53847 1.94710 2.16831 3.40961 3.48830 3.49344 3.66609 3.87384 4.00486 4.56704 4.76535 4.99696 5.03503 5.11485 5.13580 5.23984 5.31568 5.38600 5.43138 5.55759 5.56761 5.64910 5.68965 5.74244 5.78756 5.94483 5.95152 6.05344 6.08794 6.09861 6.18963 6.27450 6.31544 6.33362 6.45611 6.56963 6.61984 6.77528 6.82529 7.01204 7.11100 7.15199 7.71346 8.11551 8.37406 8.75204 9.49578 10.03175 10.38658 11.40872 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.004034 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.605723 B = 6938.512270 C = 8029.808441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.126 3.874 4 C -0.158 4.158 5 S 0.176 5.824 6 C -0.228 4.228 7 C -0.102 4.102 8 C -0.134 4.134 9 C 0.574 3.426 10 O -0.549 6.549 11 N -0.690 5.690 12 C 0.121 3.879 13 C 0.189 3.811 14 N -0.710 5.710 15 C -0.231 4.231 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.899 3.101 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.127 4.127 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.401 0.599 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.384 0.616 38 H 0.253 0.747 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -10.973 8.570 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C 0.048 3.952 4 C -0.278 4.278 5 S 0.443 5.557 6 C -0.363 4.363 7 C -0.132 4.132 8 C -0.152 4.152 9 C 0.359 3.641 10 O -0.430 6.430 11 N -0.339 5.339 12 C -0.005 4.005 13 C 0.096 3.904 14 N -0.352 5.352 15 C -0.362 4.362 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.731 3.269 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.171 4.171 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.170 0.830 34 H 0.237 0.763 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.219 0.781 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.940 -10.879 9.982 16.315 hybrid contribution 0.713 1.321 -1.378 2.038 sum -6.227 -9.558 8.604 14.288 Atomic orbital electron populations 1.22698 0.80917 1.02537 1.00018 1.87901 1.19616 1.26880 1.95473 1.20961 0.86045 0.85915 1.02288 1.24040 0.99770 1.06802 0.97208 1.82824 0.95521 1.69809 1.07589 1.25427 1.02182 1.11478 0.97232 1.21326 0.94712 1.00559 0.96553 1.20355 0.92825 1.07831 0.94189 1.17458 0.86139 0.76862 0.83673 1.90673 1.14797 1.51399 1.86112 1.45579 1.10460 1.72255 1.05615 1.21892 0.96941 1.00619 0.81050 1.20469 0.89909 0.88004 0.91991 1.42550 1.07771 1.00810 1.84065 1.19126 0.96413 0.83605 1.37019 0.91230 1.24661 0.96061 0.97690 1.01972 1.69655 1.06007 1.30329 1.51935 0.86234 0.78083 0.85464 0.77154 1.20588 1.21990 1.21970 1.22820 0.97231 1.00860 0.96235 1.22386 0.99928 0.96114 0.97023 1.22299 1.00533 0.97551 0.95426 1.22438 1.00754 0.96271 0.96995 0.93550 0.89764 0.94454 0.93043 0.88365 0.81310 0.82959 0.76301 0.93053 0.91400 0.78149 0.93677 0.92918 0.90292 0.91408 0.92742 0.92373 0.92279 0.91311 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.78 10.69 -35.23 -0.38 -6.16 16 3 C 0.13 1.88 5.65 36.00 0.20 2.08 16 4 C -0.16 -2.44 5.97 -35.11 -0.21 -2.65 16 5 S 0.18 2.12 22.97 -107.50 -2.47 -0.35 16 6 C -0.23 -2.77 11.12 28.86 0.32 -2.45 16 7 C -0.10 -1.47 9.91 -39.02 -0.39 -1.86 16 8 C -0.13 -2.25 5.98 -104.63 -0.63 -2.88 16 9 C 0.57 10.99 7.79 -12.63 -0.10 10.89 16 10 O -0.55 -11.66 14.06 5.24 0.07 -11.58 16 11 N -0.69 -12.62 5.08 -61.46 -0.31 -12.93 16 12 C 0.12 2.25 3.99 -4.05 -0.02 2.24 16 13 C 0.19 3.39 0.68 -130.70 -0.09 3.31 16 14 N -0.71 -15.78 4.76 -46.20 -0.22 -16.00 16 15 C -0.23 -5.92 8.39 -15.06 -0.13 -6.04 16 16 H 0.07 1.82 7.23 -52.49 -0.38 1.44 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.48 13.06 55.49 0.73 -25.76 16 19 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 C -0.13 -2.24 5.94 -25.07 -0.15 -2.39 16 24 C -0.12 -1.74 6.91 -24.74 -0.17 -1.91 16 25 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 26 C -0.13 -1.92 5.80 -25.62 -0.15 -2.07 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.66 5.94 -51.93 -0.31 1.36 16 32 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.15 2.05 7.10 -52.49 -0.37 1.68 16 34 H 0.40 7.01 6.54 -40.82 -0.27 6.74 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 37 H 0.38 9.13 7.28 -40.82 -0.30 8.83 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 40 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 46 H 0.06 0.88 7.55 -51.93 -0.39 0.49 16 LS Contribution 384.12 15.07 5.79 5.79 Total: -1.00 -30.59 384.12 -9.39 -39.99 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.93 Total: 14.20 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.65 Total: -4.34 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.19 Total: -54.69 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.30 Total: -17.74 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.47 Total: -0.35 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.59 -9.39 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.112 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds