Wall clock time and date at job start Tue Mar 31 2020 21:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48499 * 109.46894 * 269.99540 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99710 * 3 2 1 6 6 H 1.48504 * 109.47020 * 149.99986 * 3 2 1 7 7 C 1.37877 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00403 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47472 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47299 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00091 * 180.02562 * 12 11 10 14 14 O 1.21584 * 119.99705 * 5.13017 * 13 12 11 15 15 N 1.34772 * 119.99892 * 185.12578 * 13 12 11 16 16 C 1.47607 * 118.63818 * 175.18675 * 15 13 12 17 17 C 1.53953 * 112.13995 * 137.84822 * 16 15 13 18 18 C 1.50876 * 110.09425 * 319.43477 * 17 16 15 19 19 C 1.52571 * 109.36161 * 91.88521 * 18 17 16 20 20 O 1.42900 * 108.38877 * 36.15148 * 19 18 17 21 21 C 1.52999 * 108.51170 * 153.73546 * 19 18 17 22 22 F 1.39899 * 109.46818 * 184.76852 * 21 19 18 23 23 F 1.39895 * 109.47365 * 64.76482 * 21 19 18 24 24 F 1.39902 * 109.47094 * 304.76704 * 21 19 18 25 25 C 1.47098 * 114.32581 * 274.98771 * 19 18 17 26 26 C 1.44572 * 118.64458 * 355.16613 * 15 13 12 27 27 H 0.96993 * 120.00118 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46400 * 60.00049 * 9 7 2 29 29 H 1.09000 * 109.46935 * 300.00506 * 9 7 2 30 30 H 1.09004 * 109.47155 * 59.99760 * 10 9 7 31 31 H 1.09009 * 109.46949 * 300.00570 * 10 9 7 32 32 H 1.09004 * 109.46474 * 59.99969 * 11 10 9 33 33 H 1.08992 * 109.47366 * 300.00298 * 11 10 9 34 34 H 0.96997 * 120.00360 * 0.02562 * 12 11 10 35 35 H 1.08996 * 108.94620 * 258.52693 * 16 15 13 36 36 H 1.08997 * 108.94966 * 17.25152 * 16 15 13 37 37 H 1.08997 * 109.36466 * 79.62345 * 17 16 15 38 38 H 1.08991 * 109.36530 * 199.36785 * 17 16 15 39 39 H 1.08999 * 109.49254 * 331.91800 * 18 17 16 40 40 H 1.08999 * 109.48774 * 211.85130 * 18 17 16 41 41 H 0.96699 * 113.99959 * 177.61686 * 20 19 18 42 42 H 1.08999 * 109.32336 * 183.06440 * 25 19 18 43 43 H 1.08999 * 109.32475 * 302.53738 * 25 19 18 44 44 H 1.09000 * 109.44852 * 150.71040 * 26 15 13 45 45 H 1.08991 * 109.43159 * 30.77685 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0046 12 7 2.4323 -6.1006 0.0049 13 6 1.9831 -7.3714 0.0060 14 8 0.7917 -7.5950 -0.0876 15 7 2.8546 -8.3941 0.1106 16 6 2.3241 -9.7674 0.2171 17 6 3.1211 -10.7655 -0.6426 18 6 3.4704 -10.1417 -1.9712 19 6 4.8377 -9.4722 -1.8718 20 8 5.6684 -10.2673 -1.0233 21 6 5.4639 -9.4369 -3.2673 22 9 6.7634 -8.9256 -3.1825 23 9 4.6949 -8.6200 -4.1031 24 9 5.5061 -10.7329 -3.7925 25 6 4.8038 -8.1010 -1.3403 26 6 4.2702 -8.1008 0.1135 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8720 -3.6036 0.8927 31 1 2.8721 -3.6051 -0.8873 32 1 0.8534 -5.0458 -0.8852 33 1 0.8540 -5.0438 0.8947 34 1 3.3860 -5.9235 0.0045 35 1 2.3681 -10.0840 1.2591 36 1 1.2845 -9.7717 -0.1103 37 1 4.0374 -11.0409 -0.1205 38 1 2.5190 -11.6582 -0.8115 39 1 2.7188 -9.3967 -2.2321 40 1 3.4988 -10.9145 -2.7394 41 1 6.5715 -9.9338 -0.9326 42 1 5.8104 -7.6833 -1.3554 43 1 4.1525 -7.4885 -1.9638 44 1 4.7967 -8.8588 0.6934 45 1 4.4366 -7.1210 0.5609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376723021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:27 Heat of formation + Delta-G solvation = -236.986265 kcal Electronic energy + Delta-G solvation = -31062.903007 eV Core-core repulsion = 26279.285897 eV Total energy + Delta-G solvation = -4783.617111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.58095 -48.08289 -47.98761 -40.97691 -39.19825 -36.21358 -35.40480 -33.90217 -33.05891 -32.62588 -31.02194 -28.38926 -27.10524 -26.07913 -24.50311 -23.30776 -21.93815 -21.05886 -20.63171 -19.45625 -19.21678 -18.81606 -18.66919 -18.11159 -16.72260 -16.49169 -16.16893 -15.94337 -15.82813 -14.90462 -14.84286 -14.69648 -14.66941 -14.46265 -14.38859 -14.24863 -14.15117 -14.10545 -13.82709 -13.70816 -13.28391 -13.20319 -12.70329 -12.33615 -12.20180 -12.08113 -11.79289 -11.76248 -11.59578 -11.35747 -11.03312 -10.91338 -10.78527 -10.71581 -10.59808 -10.04972 -9.87650 -9.45304 -9.13497 -9.00495 -8.57075 -8.37910 -6.02552 -4.05741 2.17135 2.62292 3.08181 3.19781 3.28566 3.30068 3.36550 3.39009 3.48799 3.82331 3.91774 4.14711 4.21869 4.43621 4.47697 4.60654 4.74153 4.86466 4.98426 5.09392 5.18758 5.33253 5.33940 5.39531 5.49489 5.64467 5.69284 5.71601 5.79582 5.98691 6.16570 6.39853 6.50896 6.60322 6.72002 6.74290 6.96706 7.00515 7.62869 7.75613 7.96226 8.01098 8.36961 8.66855 9.00950 9.58475 11.08743 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.002518 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.907199 B =11116.957143 C =12203.536783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.698 3.302 14 O -0.588 6.588 15 N -0.628 5.628 16 C 0.127 3.873 17 C -0.129 4.129 18 C -0.108 4.108 19 C 0.122 3.878 20 O -0.529 6.529 21 C 0.415 3.585 22 F -0.185 7.185 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.189 4.189 26 C 0.125 3.875 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.384 0.616 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.872 -24.915 -2.362 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.397 5.397 13 C 0.399 3.601 14 O -0.466 6.466 15 N -0.366 5.366 16 C 0.005 3.995 17 C -0.167 4.167 18 C -0.145 4.145 19 C 0.079 3.921 20 O -0.337 6.337 21 C 0.361 3.639 22 F -0.166 7.166 23 F -0.157 7.157 24 F -0.158 7.158 25 C -0.228 4.228 26 C 0.000 4.000 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.234 0.766 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.294 -25.307 -2.376 28.235 hybrid contribution 1.746 1.484 -0.554 2.357 sum 14.040 -23.823 -2.930 27.808 Atomic orbital electron populations 1.69965 1.06053 1.26696 1.50529 1.25030 0.94854 0.99293 0.95283 0.86586 0.79790 0.83459 0.78097 1.20662 1.21210 1.19904 1.21198 0.92965 0.90948 1.50965 0.92676 1.19023 0.93839 0.90777 0.97699 1.21887 0.99798 0.93375 1.00746 1.21531 0.91352 0.84187 1.01951 1.45595 1.10504 1.04533 1.79103 1.16065 0.85160 0.80954 0.77949 1.90909 1.14414 1.83747 1.57496 1.46935 1.05017 1.06235 1.78390 1.21727 0.99213 0.79127 0.99459 1.21607 1.02036 0.98129 0.94898 1.21217 0.91906 1.01113 1.00313 1.21076 0.93594 0.93985 0.83477 1.86692 1.26500 1.53754 1.66728 1.21880 0.76957 0.73848 0.91228 1.93165 1.39707 1.87238 1.96488 1.93217 1.75028 1.73006 1.74452 1.93185 1.96182 1.37941 1.88476 1.22203 1.04746 0.95222 1.00616 1.21251 0.81988 1.02859 0.93872 0.92916 0.96232 0.96249 0.92829 0.92809 0.91832 0.91967 0.77187 0.91938 0.88901 0.88880 0.89987 0.89006 0.89945 0.76624 0.88731 0.88739 0.88847 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.30 5.27 -26.74 -0.14 -2.44 16 11 C 0.13 2.31 5.68 -4.04 -0.02 2.29 16 12 N -0.74 -10.38 5.39 -65.23 -0.35 -10.73 16 13 C 0.70 10.19 8.21 -86.92 -0.71 9.48 16 14 O -0.59 -11.07 15.62 5.29 0.08 -10.98 16 15 N -0.63 -6.46 2.24 -178.28 -0.40 -6.86 16 16 C 0.13 1.16 6.13 -2.94 -0.02 1.14 16 17 C -0.13 -0.90 5.63 -27.30 -0.15 -1.05 16 18 C -0.11 -0.85 4.61 -28.02 -0.13 -0.98 16 19 C 0.12 0.85 0.40 -93.67 -0.04 0.81 16 20 O -0.53 -2.89 9.65 -35.23 -0.34 -3.23 16 21 C 0.42 3.53 2.30 37.16 0.09 3.62 16 22 F -0.18 -1.51 16.04 2.25 0.04 -1.47 16 23 F -0.18 -1.80 16.51 2.25 0.04 -1.76 16 24 F -0.18 -1.67 16.16 2.25 0.04 -1.63 16 25 C -0.19 -1.27 4.37 -28.58 -0.12 -1.40 16 26 C 0.13 0.89 5.16 -4.09 -0.02 0.86 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.39 4.40 6.06 -40.82 -0.25 4.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.04 6.91 -51.93 -0.36 0.68 16 37 H 0.09 0.63 6.04 -51.93 -0.31 0.32 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.88 7.48 -51.93 -0.39 0.49 16 40 H 0.08 0.63 6.98 -51.93 -0.36 0.27 16 41 H 0.38 0.94 8.49 45.56 0.39 1.33 16 42 H 0.09 0.47 7.49 -51.93 -0.39 0.08 16 43 H 0.09 0.82 7.74 -51.93 -0.40 0.42 16 44 H 0.09 0.52 7.24 -51.93 -0.38 0.15 16 45 H 0.08 0.56 6.11 -51.93 -0.32 0.24 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.47 364.77 -7.20 -40.67 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.69 Total: 0.58 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.83 Total: -0.45 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.01 Total: -43.55 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.26 Total: -14.22 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.11 Total: -4.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.47 -7.20 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376723021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.311 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds