Wall clock time and date at job start Tue Mar 31 2020 22:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00087 * 2 1 4 4 H 1.48494 * 109.47636 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47187 * 300.00094 * 3 2 1 6 6 H 1.48506 * 109.47097 * 59.99763 * 3 2 1 7 7 C 1.37883 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99860 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.53048 * 109.45707 * 179.97438 * 9 7 2 11 11 C 1.53186 * 109.31123 * 178.61104 * 10 9 7 12 12 N 1.46928 * 108.77567 * 54.63829 * 11 10 9 13 13 C 1.34774 * 120.63401 * 126.36503 * 12 11 10 14 14 O 1.21354 * 120.00034 * 1.95629 * 13 12 11 15 15 C 1.49451 * 120.00214 * 181.94943 * 13 12 11 16 16 O 1.21353 * 119.99639 * 353.07600 * 15 13 12 17 17 N 1.34776 * 119.99947 * 173.07021 * 15 13 12 18 18 C 1.46500 * 119.99683 * 180.02562 * 17 15 13 19 19 H 1.08998 * 110.01827 * 326.38645 * 18 17 15 20 20 C 1.53871 * 110.07522 * 87.80988 * 18 17 15 21 21 C 1.54271 * 106.59818 * 119.30404 * 20 18 17 22 22 C 1.54887 * 104.19701 * 23.61007 * 21 20 18 23 23 H 1.09007 * 110.75397 * 80.37310 * 22 21 20 24 24 C 1.50695 * 110.91566 * 203.66758 * 22 21 20 25 25 O 1.20828 * 119.99791 * 115.95703 * 24 22 21 26 26 O 1.34222 * 120.00380 * 295.95333 * 24 22 21 27 27 C 1.54271 * 110.03011 * 205.00104 * 18 17 15 28 28 C 1.46923 * 118.73532 * 306.63619 * 12 11 10 29 29 C 1.52762 * 109.00862 * 53.31685 * 28 12 11 30 30 H 0.97001 * 119.99934 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.44639 * 299.96029 * 9 7 2 32 32 H 1.09004 * 109.49715 * 58.65911 * 10 9 7 33 33 H 1.08998 * 109.52189 * 298.58025 * 10 9 7 34 34 H 1.08995 * 109.59205 * 294.84976 * 11 10 9 35 35 H 1.09001 * 109.58614 * 174.42324 * 11 10 9 36 36 H 0.97000 * 119.99980 * 0.02562 * 17 15 13 37 37 H 1.08994 * 110.03399 * 238.58853 * 20 18 17 38 38 H 1.09005 * 110.03180 * 359.97438 * 20 18 17 39 39 H 1.09004 * 110.48648 * 264.93240 * 21 20 18 40 40 H 1.08996 * 110.48437 * 142.29138 * 21 20 18 41 41 H 0.96699 * 117.00568 * 179.97438 * 26 24 22 42 42 H 1.08994 * 110.48497 * 98.37816 * 27 18 17 43 43 H 1.08994 * 110.48544 * 335.73391 * 27 18 17 44 44 H 1.09003 * 109.59063 * 173.14433 * 28 12 11 45 45 H 1.09001 * 109.59418 * 293.57526 * 28 12 11 46 46 H 1.09002 * 109.57018 * 185.55314 * 29 28 12 47 47 H 1.08995 * 109.38910 * 65.50739 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9865 0.0356 12 7 0.5224 -5.0089 -1.0813 13 6 0.5121 -6.0347 -1.9554 14 8 1.2720 -6.9687 -1.8038 15 6 -0.4352 -6.0220 -3.1113 16 8 -1.2793 -5.1541 -3.1944 17 7 -0.3519 -6.9745 -4.0612 18 6 -1.2801 -6.9617 -5.1945 19 1 -2.2513 -6.5819 -4.8772 20 6 -0.7171 -6.0873 -6.3286 21 6 -0.5461 -7.0100 -7.5531 22 6 -1.5436 -8.1673 -7.2989 23 1 -2.5562 -7.8720 -7.5739 24 6 -1.1297 -9.4083 -8.0469 25 8 -0.8179 -10.4046 -7.4385 26 8 -1.1075 -9.4070 -9.3889 27 6 -1.4317 -8.3852 -5.7695 28 6 -0.4165 -3.8887 -1.2306 29 6 0.3700 -2.5792 -1.2483 30 1 -0.4850 0.8401 -0.0004 31 1 0.6248 -2.5565 0.8908 32 1 2.8885 -3.5913 0.8781 33 1 2.8561 -3.6195 -0.9016 34 1 0.9374 -5.0711 0.9789 35 1 2.1753 -5.8174 -0.0640 36 1 0.3227 -7.6683 -3.9945 37 1 -1.4149 -5.2831 -6.5616 38 1 0.2471 -5.6716 -6.0360 39 1 0.4741 -7.3902 -7.6048 40 1 -0.8033 -6.4791 -8.4696 41 1 -0.8349 -10.2262 -9.8244 42 1 -2.3352 -8.8579 -5.3844 43 1 -0.5545 -8.9875 -5.5332 44 1 -0.9669 -3.9953 -2.1654 45 1 -1.1134 -3.8818 -0.3925 46 1 -0.3225 -1.7375 -1.2594 47 1 0.9975 -2.5460 -2.1389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592440421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:43 Heat of formation + Delta-G solvation = -156.542710 kcal Electronic energy + Delta-G solvation = -29710.821703 eV Core-core repulsion = 25472.549627 eV Total energy + Delta-G solvation = -4238.272076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09355 -40.61104 -38.96801 -37.73352 -36.98395 -36.51075 -34.18650 -33.32583 -31.21326 -30.06081 -29.60707 -28.86085 -26.56939 -24.67258 -23.62005 -22.45075 -22.24202 -20.91496 -20.56640 -20.12842 -18.88267 -18.50340 -17.51911 -17.31368 -16.72336 -16.52409 -16.23722 -15.81611 -15.58309 -15.27171 -14.80405 -14.52836 -14.00760 -13.88306 -13.81533 -13.74313 -13.09468 -12.91414 -12.76696 -12.67457 -12.36032 -12.31290 -12.13064 -11.94770 -11.74034 -11.69534 -11.45525 -11.38881 -11.07542 -10.96350 -10.83002 -10.81475 -10.55149 -10.35327 -10.06846 -9.70583 -9.37876 -9.21986 -9.17237 -8.51023 -8.31369 -8.08212 -6.00384 -4.06776 1.59915 1.74833 2.38434 2.64848 3.28316 3.36727 3.39883 3.40790 3.70148 3.92124 4.05761 4.41201 4.42430 4.53975 4.77892 4.83599 4.93605 4.98550 5.01787 5.11139 5.29352 5.38217 5.57063 5.61222 5.67965 5.72381 5.82378 5.86243 5.94453 6.04912 6.08493 6.15882 6.25573 6.47425 6.62406 6.74905 6.81905 6.98391 7.10679 7.17168 7.31578 7.43880 7.67593 7.79844 7.90594 7.96917 8.08806 8.25468 8.42767 8.96753 9.58038 11.05038 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019999 B = 0.002281 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.746311 B =12270.509597 C =13019.729856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.106 3.894 12 N -0.558 5.558 13 C 0.498 3.502 14 O -0.546 6.546 15 C 0.513 3.487 16 O -0.500 6.500 17 N -0.699 5.699 18 C 0.139 3.861 19 H 0.103 0.897 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.088 4.088 23 H 0.121 0.879 24 C 0.487 3.513 25 O -0.513 6.513 26 O -0.515 6.515 27 C -0.115 4.115 28 C 0.044 3.956 29 C -0.121 4.121 30 H 0.260 0.740 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.412 0.588 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.142 0.858 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -16.793 -16.201 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.160 4.160 11 C -0.016 4.016 12 N -0.289 5.289 13 C 0.280 3.720 14 O -0.426 6.426 15 C 0.296 3.704 16 O -0.376 6.376 17 N -0.353 5.353 18 C 0.035 3.965 19 H 0.121 0.879 20 C -0.176 4.176 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.139 0.861 24 C 0.329 3.671 25 O -0.401 6.401 26 O -0.327 6.327 27 C -0.153 4.153 28 C -0.076 4.076 29 C -0.159 4.159 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.269 0.731 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.158 0.842 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.351 -16.412 -15.777 23.386 hybrid contribution 0.974 0.153 -0.175 1.002 sum -4.377 -16.258 -15.952 23.194 Atomic orbital electron populations 1.69856 1.05823 1.26324 1.50871 1.24969 0.94868 0.99048 0.95149 0.86569 0.80142 0.83922 0.77547 1.19879 1.21068 1.21069 1.21229 0.92915 0.90580 1.50275 0.92699 1.18697 0.92695 0.91615 0.94368 1.22013 0.98919 0.94003 1.01108 1.21896 0.91764 1.00121 0.87803 1.48262 1.34839 1.20093 1.25721 1.19838 0.84523 0.83760 0.83914 1.90702 1.41765 1.34870 1.75254 1.20449 0.84796 0.81736 0.83442 1.90380 1.36543 1.34324 1.76373 1.45951 1.36176 1.30109 1.23023 1.21698 0.94216 0.95043 0.85583 0.87891 1.22649 1.03078 0.98233 0.93682 1.22344 0.98464 0.94456 0.99402 1.21975 1.02803 0.91322 0.94600 0.86141 1.23313 0.73402 0.89829 0.80527 1.90748 1.44750 1.35415 1.69140 1.84539 1.81104 1.45193 1.21854 1.22597 1.04778 0.96316 0.91640 1.23445 0.91870 0.86043 1.06217 1.21900 0.99953 0.95116 0.98928 0.93028 0.95460 0.91885 0.92914 0.91505 0.90134 0.75108 0.89873 0.90168 0.90838 0.89763 0.73083 0.89531 0.89117 0.84172 0.92267 0.87684 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.83 11.30 55.43 0.63 -24.20 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.78 8.56 -34.44 -0.29 -14.08 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.08 2.07 -91.73 -0.19 0.89 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 1.93 6.43 -3.71 -0.02 1.91 16 12 N -0.56 -10.38 2.98 -173.54 -0.52 -10.90 16 13 C 0.50 8.63 7.76 -11.59 -0.09 8.54 16 14 O -0.55 -9.99 15.91 5.49 0.09 -9.91 16 15 C 0.51 7.64 7.80 -11.58 -0.09 7.55 16 16 O -0.50 -8.25 12.68 5.49 0.07 -8.18 16 17 N -0.70 -7.78 4.98 -53.15 -0.26 -8.04 16 18 C 0.14 1.20 3.24 -66.81 -0.22 0.98 16 19 H 0.10 0.95 7.56 -51.93 -0.39 0.56 16 20 C -0.14 -1.08 6.59 -25.61 -0.17 -1.25 16 21 C -0.11 -0.66 6.27 -25.07 -0.16 -0.81 16 22 C -0.09 -0.52 3.39 -89.78 -0.30 -0.83 16 23 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 24 C 0.49 3.61 7.64 36.00 0.28 3.89 16 25 O -0.51 -5.48 16.51 -18.75 -0.31 -5.79 16 26 O -0.52 -2.73 13.42 -39.24 -0.53 -3.26 16 27 C -0.12 -0.82 5.58 -25.07 -0.14 -0.96 16 28 C 0.04 0.87 6.20 -3.93 -0.02 0.84 16 29 C -0.12 -2.79 5.14 -26.83 -0.14 -2.92 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.40 7.01 -51.93 -0.36 1.04 16 36 H 0.41 4.25 7.85 -40.82 -0.32 3.93 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 39 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.41 0.61 9.10 45.56 0.41 1.03 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.74 7.08 -51.93 -0.37 0.37 16 44 H 0.14 2.71 3.79 -56.97 -0.22 2.49 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.11 2.71 6.03 -51.93 -0.31 2.40 16 47 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -32.45 377.78 -8.12 -40.56 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.16 Total: 5.35 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.80 Total: 2.65 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.15 Total: -43.14 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.68 Total: -27.14 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.45 -8.12 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592440421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.980 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds