Wall clock time and date at job start Tue Mar 31 2020 21:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99433 * 2 1 4 4 H 1.48500 * 109.47142 * 269.99996 * 3 2 1 5 5 H 1.48495 * 109.47130 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.46867 * 150.00070 * 3 2 1 7 7 C 1.38807 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00057 * 164.49396 * 7 2 1 9 9 N 1.36936 * 120.00255 * 344.49170 * 7 2 1 10 10 C 1.47608 * 118.64018 * 331.70891 * 9 7 2 11 11 C 1.53945 * 112.14337 * 222.11273 * 10 9 7 12 12 C 1.50885 * 110.09576 * 40.56090 * 11 10 9 13 13 C 1.52563 * 109.34740 * 268.11257 * 12 11 10 14 14 C 1.47107 * 114.30686 * 85.04074 * 13 12 11 15 15 C 1.44580 * 118.64300 * 151.68438 * 9 7 2 16 16 H 1.09000 * 109.44717 * 209.31656 * 15 9 7 17 17 C 1.52993 * 109.44846 * 329.26833 * 15 9 7 18 18 N 1.46504 * 109.47295 * 305.04984 * 17 15 9 19 19 C 1.34774 * 119.99745 * 180.02562 * 18 17 15 20 20 O 1.21566 * 120.00713 * 0.02562 * 19 18 17 21 21 C 1.47696 * 119.99440 * 180.02562 * 19 18 17 22 22 C 1.39653 * 120.15964 * 359.72498 * 21 19 18 23 23 C 1.38068 * 119.85363 * 179.72036 * 22 21 19 24 24 F 1.35103 * 119.91683 * 180.25339 * 23 22 21 25 25 C 1.38652 * 120.16599 * 0.53158 * 23 22 21 26 26 C 1.38179 * 120.31369 * 359.76741 * 25 23 22 27 27 C 1.38311 * 120.14656 * 359.95488 * 26 25 23 28 28 F 1.35107 * 120.08746 * 180.02562 * 27 26 25 29 29 H 0.96999 * 120.01074 * 359.97438 * 1 2 3 30 30 H 1.09004 * 108.94384 * 342.79746 * 10 9 7 31 31 H 1.09002 * 108.95021 * 101.51641 * 10 9 7 32 32 H 1.09003 * 109.36537 * 160.74781 * 11 10 9 33 33 H 1.08996 * 109.36991 * 280.49737 * 11 10 9 34 34 H 1.09001 * 109.48986 * 28.07507 * 12 11 10 35 35 H 1.09002 * 109.49287 * 148.12324 * 12 11 10 36 36 H 1.09000 * 108.51008 * 206.27692 * 13 12 11 37 37 H 1.08993 * 108.51183 * 323.92629 * 13 12 11 38 38 H 1.09001 * 109.30724 * 176.89914 * 14 13 12 39 39 H 1.09007 * 109.35682 * 57.42151 * 14 13 12 40 40 H 1.08997 * 109.47506 * 65.05536 * 17 15 9 41 41 H 1.09001 * 109.47010 * 185.05265 * 17 15 9 42 42 H 0.96998 * 119.99344 * 0.02562 * 18 17 15 43 43 H 1.08002 * 120.07199 * 0.02562 * 22 21 19 44 44 H 1.08000 * 119.84122 * 179.74020 * 25 23 22 45 45 H 1.08001 * 119.92773 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2189 -0.2506 9 7 1.3631 -2.3666 0.3160 10 6 0.2009 -2.3058 1.2240 11 6 0.2096 -3.4491 2.2549 12 6 1.6119 -3.6794 2.7619 13 6 2.2916 -4.7419 1.9036 14 6 2.9182 -4.2212 0.6788 15 6 1.8460 -3.6047 -0.2534 16 1 1.0156 -4.3022 -0.3624 17 6 2.4626 -3.3279 -1.6259 18 7 1.4846 -2.6375 -2.4704 19 6 1.8090 -2.2908 -3.7317 20 8 2.9129 -2.5514 -4.1690 21 6 0.8231 -1.5943 -4.5828 22 6 -0.4480 -1.2984 -4.0859 23 6 -1.3627 -0.6419 -4.8850 24 9 -2.5910 -0.3505 -4.4038 25 6 -1.0258 -0.2862 -6.1821 26 6 0.2278 -0.5811 -6.6829 27 6 1.1561 -1.2332 -5.8918 28 9 2.3817 -1.5205 -6.3825 29 1 -0.4852 0.8399 0.0004 30 1 0.2142 -1.3526 1.7525 31 1 -0.7132 -2.3702 0.6338 32 1 -0.4385 -3.1867 3.0911 33 1 -0.1574 -4.3618 1.7856 34 1 2.1769 -2.7490 2.7041 35 1 1.5734 -4.0177 3.7974 36 1 3.0586 -5.2323 2.5031 37 1 1.5473 -5.4859 1.6201 38 1 3.4237 -5.0348 0.1587 39 1 3.6487 -3.4566 0.9436 40 1 3.3467 -2.7015 -1.5075 41 1 2.7454 -4.2707 -2.0940 42 1 0.6036 -2.4299 -2.1216 43 1 -0.7132 -1.5781 -3.0770 44 1 -1.7468 0.2235 -6.8040 45 1 0.4834 -0.3014 -7.6943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:14 Heat of formation + Delta-G solvation = -81.922541 kcal Electronic energy + Delta-G solvation = -30765.649493 eV Core-core repulsion = 26419.525674 eV Total energy + Delta-G solvation = -4346.123818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.83573 -48.71418 -39.67509 -38.41176 -37.63967 -34.55680 -33.52768 -32.23659 -31.13337 -30.67512 -29.92781 -27.10217 -25.75165 -24.17339 -23.50916 -22.79962 -21.85690 -20.25201 -19.69821 -19.23011 -18.16516 -17.30990 -17.08215 -16.37795 -15.86109 -15.74734 -15.56765 -15.21188 -14.93865 -14.67088 -14.40828 -14.33154 -14.16618 -14.02147 -13.59788 -13.45278 -13.15061 -12.83223 -12.75358 -12.45522 -12.13123 -11.98327 -11.83077 -11.49503 -11.40791 -11.27126 -11.12442 -10.85904 -10.63270 -10.24009 -10.06444 -10.01744 -9.74034 -9.65120 -9.59864 -9.38409 -9.30487 -8.57135 -8.46474 -8.26130 -6.74503 -5.87392 -3.31700 0.64470 0.98506 2.94839 3.33562 3.41369 3.44403 3.60655 3.85510 4.14188 4.19935 4.44191 4.52416 4.74521 5.03630 5.15447 5.17719 5.31329 5.41049 5.45963 5.57474 5.62697 5.79546 5.83860 5.88759 5.95445 5.98974 6.04555 6.08421 6.12469 6.27332 6.35601 6.53237 6.58136 6.62604 6.66503 6.71415 6.72671 6.81444 6.95714 7.06307 7.15138 7.36165 7.61274 7.78633 8.16275 8.38190 8.75921 9.15888 9.80121 10.25378 11.19248 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004442 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.391161 B = 6301.823495 C = 6898.889037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.129 3.871 18 N -0.679 5.679 19 C 0.552 3.448 20 O -0.544 6.544 21 C -0.133 4.133 22 C -0.080 4.080 23 C 0.083 3.917 24 F -0.132 7.132 25 C -0.108 4.108 26 C -0.142 4.142 27 C 0.143 3.857 28 F -0.113 7.113 29 H 0.253 0.747 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.411 0.589 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -4.922 -6.454 8.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.185 4.185 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.329 5.329 19 C 0.337 3.663 20 O -0.424 6.424 21 C -0.137 4.137 22 C -0.100 4.100 23 C 0.063 3.937 24 F -0.110 7.110 25 C -0.127 4.127 26 C -0.161 4.161 27 C 0.122 3.878 28 F -0.091 7.091 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.249 0.751 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.784 -4.993 -6.702 8.809 hybrid contribution -0.003 1.229 0.349 1.278 sum -2.787 -3.763 -6.354 7.893 Atomic orbital electron populations 1.70001 1.04928 1.25514 1.54108 1.24894 0.95141 0.97898 1.00532 0.86505 0.79436 0.84370 0.77782 1.21490 1.21648 1.20577 1.19012 0.92321 0.84648 1.42119 0.91974 1.43727 1.34432 1.01630 1.50794 1.20997 0.88477 0.95547 0.89390 1.22069 0.96100 1.00454 0.99573 1.20948 0.97080 0.99814 0.96588 1.20288 0.99014 0.97915 0.96618 1.21369 0.99613 0.99784 0.96890 1.20523 0.94107 0.89482 0.89522 0.93685 1.21543 0.92506 0.95254 0.90223 1.45596 1.18659 1.57380 1.11270 1.17745 0.86550 0.79636 0.82393 1.90783 1.21919 1.55748 1.73945 1.20072 0.95436 1.04083 0.94085 1.21419 0.91334 0.96307 1.00902 1.17486 0.81651 1.01437 0.93102 1.91542 1.39689 1.91473 1.88319 1.21092 0.97139 1.00264 0.94200 1.20904 0.92772 1.01298 1.01091 1.17690 0.81383 0.97410 0.91313 1.91594 1.39618 1.90739 1.87165 0.93653 0.90872 0.95790 0.93252 0.93799 0.90765 0.94210 0.94067 0.93523 0.93279 0.91776 0.91080 0.92862 0.75142 0.82488 0.83591 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.86 11.13 55.49 0.62 -22.25 16 2 C 0.01 0.35 4.86 -17.43 -0.08 0.27 16 3 Si 0.89 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.00 7.62 -15.06 -0.11 -6.11 16 8 H 0.06 1.57 6.75 -52.49 -0.35 1.21 16 9 N -0.58 -12.18 1.77 -164.47 -0.29 -12.47 16 10 C 0.18 3.76 4.66 -2.94 -0.01 3.74 16 11 C -0.14 -2.45 5.71 -27.30 -0.16 -2.61 16 12 C -0.11 -1.75 5.51 -28.02 -0.15 -1.91 16 13 C -0.10 -1.53 5.16 -29.78 -0.15 -1.68 16 14 C -0.14 -2.21 5.06 -28.58 -0.14 -2.35 16 15 C 0.17 3.12 2.19 -67.98 -0.15 2.97 16 16 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 17 C 0.13 2.41 4.52 -4.04 -0.02 2.39 16 18 N -0.68 -13.01 4.67 -61.30 -0.29 -13.29 16 19 C 0.55 10.95 7.77 -12.40 -0.10 10.85 16 20 O -0.54 -12.22 15.34 5.31 0.08 -12.14 16 21 C -0.13 -2.28 5.88 -104.92 -0.62 -2.90 16 22 C -0.08 -1.27 9.51 -39.12 -0.37 -1.64 16 23 C 0.08 1.16 7.29 -39.49 -0.29 0.87 16 24 F -0.13 -1.93 17.26 2.25 0.04 -1.90 16 25 C -0.11 -1.23 10.01 -39.45 -0.40 -1.62 16 26 C -0.14 -1.68 10.01 -39.58 -0.40 -2.07 16 27 C 0.14 2.24 7.28 -38.97 -0.28 1.96 16 28 F -0.11 -1.97 15.55 2.25 0.04 -1.94 16 29 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.07 1.74 6.47 -51.93 -0.34 1.41 16 31 H 0.02 0.54 8.02 -51.93 -0.42 0.12 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 34 H 0.07 1.41 7.48 -51.93 -0.39 1.02 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 38 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.48 6.84 -51.93 -0.36 1.12 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.41 7.95 6.11 -40.82 -0.25 7.70 16 43 H 0.16 2.60 6.41 -52.49 -0.34 2.26 16 44 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -27.06 363.70 -8.92 -35.98 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.13 Total: 6.40 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -3.44 Total: 0.16 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.04 Total: -48.01 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.07 Total: -3.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.06 -8.92 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.939 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds