Wall clock time and date at job start Tue Mar 31 2020 21:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99433 * 2 1 4 4 H 1.48500 * 109.47142 * 269.99996 * 3 2 1 5 5 H 1.48495 * 109.47130 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.46867 * 150.00070 * 3 2 1 7 7 C 1.38807 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00057 * 164.49396 * 7 2 1 9 9 N 1.36936 * 120.00255 * 344.49170 * 7 2 1 10 10 C 1.47608 * 118.64018 * 331.70891 * 9 7 2 11 11 C 1.53945 * 112.14337 * 222.11273 * 10 9 7 12 12 C 1.50885 * 110.09576 * 40.56090 * 11 10 9 13 13 C 1.52563 * 109.34740 * 268.11257 * 12 11 10 14 14 C 1.47107 * 114.30686 * 85.04074 * 13 12 11 15 15 C 1.44580 * 118.64300 * 151.68438 * 9 7 2 16 16 H 1.09000 * 109.44717 * 209.31656 * 15 9 7 17 17 C 1.52993 * 109.44846 * 329.26833 * 15 9 7 18 18 N 1.46504 * 109.47295 * 305.04984 * 17 15 9 19 19 C 1.34774 * 119.99745 * 180.02562 * 18 17 15 20 20 O 1.21566 * 120.00713 * 0.02562 * 19 18 17 21 21 C 1.47696 * 119.99440 * 180.02562 * 19 18 17 22 22 C 1.39653 * 120.15964 * 359.72498 * 21 19 18 23 23 C 1.38068 * 119.85363 * 179.72036 * 22 21 19 24 24 F 1.35103 * 119.91683 * 180.25339 * 23 22 21 25 25 C 1.38652 * 120.16599 * 0.53158 * 23 22 21 26 26 C 1.38179 * 120.31369 * 359.76741 * 25 23 22 27 27 C 1.38311 * 120.14656 * 359.95488 * 26 25 23 28 28 F 1.35107 * 120.08746 * 180.02562 * 27 26 25 29 29 H 0.96999 * 120.01074 * 359.97438 * 1 2 3 30 30 H 1.09004 * 108.94384 * 342.79746 * 10 9 7 31 31 H 1.09002 * 108.95021 * 101.51641 * 10 9 7 32 32 H 1.09003 * 109.36537 * 160.74781 * 11 10 9 33 33 H 1.08996 * 109.36991 * 280.49737 * 11 10 9 34 34 H 1.09001 * 109.48986 * 28.07507 * 12 11 10 35 35 H 1.09002 * 109.49287 * 148.12324 * 12 11 10 36 36 H 1.09000 * 108.51008 * 206.27692 * 13 12 11 37 37 H 1.08993 * 108.51183 * 323.92629 * 13 12 11 38 38 H 1.09001 * 109.30724 * 176.89914 * 14 13 12 39 39 H 1.09007 * 109.35682 * 57.42151 * 14 13 12 40 40 H 1.08997 * 109.47506 * 65.05536 * 17 15 9 41 41 H 1.09001 * 109.47010 * 185.05265 * 17 15 9 42 42 H 0.96998 * 119.99344 * 0.02562 * 18 17 15 43 43 H 1.08002 * 120.07199 * 0.02562 * 22 21 19 44 44 H 1.08000 * 119.84122 * 179.74020 * 25 23 22 45 45 H 1.08001 * 119.92773 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0608 -1.2189 -0.2506 9 7 1.3631 -2.3666 0.3160 10 6 0.2009 -2.3058 1.2240 11 6 0.2096 -3.4491 2.2549 12 6 1.6119 -3.6794 2.7619 13 6 2.2916 -4.7419 1.9036 14 6 2.9182 -4.2212 0.6788 15 6 1.8460 -3.6047 -0.2534 16 1 1.0156 -4.3022 -0.3624 17 6 2.4626 -3.3279 -1.6259 18 7 1.4846 -2.6375 -2.4704 19 6 1.8090 -2.2908 -3.7317 20 8 2.9129 -2.5514 -4.1690 21 6 0.8231 -1.5943 -4.5828 22 6 -0.4480 -1.2984 -4.0859 23 6 -1.3627 -0.6419 -4.8850 24 9 -2.5910 -0.3505 -4.4038 25 6 -1.0258 -0.2862 -6.1821 26 6 0.2278 -0.5811 -6.6829 27 6 1.1561 -1.2332 -5.8918 28 9 2.3817 -1.5205 -6.3825 29 1 -0.4852 0.8399 0.0004 30 1 0.2142 -1.3526 1.7525 31 1 -0.7132 -2.3702 0.6338 32 1 -0.4385 -3.1867 3.0911 33 1 -0.1574 -4.3618 1.7856 34 1 2.1769 -2.7490 2.7041 35 1 1.5734 -4.0177 3.7974 36 1 3.0586 -5.2323 2.5031 37 1 1.5473 -5.4859 1.6201 38 1 3.4237 -5.0348 0.1587 39 1 3.6487 -3.4566 0.9436 40 1 3.3467 -2.7015 -1.5075 41 1 2.7454 -4.2707 -2.0940 42 1 0.6036 -2.4299 -2.1216 43 1 -0.7132 -1.5781 -3.0770 44 1 -1.7468 0.2235 -6.8040 45 1 0.4834 -0.3014 -7.6943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:13 Heat of formation + Delta-G solvation = -95.039722 kcal Electronic energy + Delta-G solvation = -30766.218296 eV Core-core repulsion = 26419.525674 eV Total energy + Delta-G solvation = -4346.692622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.97961 -49.97298 -41.11811 -39.81914 -39.00902 -36.07153 -35.24544 -33.63058 -32.53732 -32.28297 -31.07352 -28.68114 -27.34744 -25.43534 -25.19258 -24.04935 -23.20472 -21.72514 -21.10533 -20.79835 -19.52783 -18.51085 -18.32623 -17.95603 -17.33039 -17.14003 -17.00900 -16.46533 -16.41912 -16.20803 -15.94503 -15.67668 -15.52661 -15.37058 -15.21808 -14.83674 -14.41790 -14.28837 -14.13588 -13.72429 -13.63552 -13.39822 -13.20934 -12.98598 -12.88089 -12.83388 -12.71193 -12.55280 -12.38857 -12.02247 -11.55579 -11.39839 -11.32608 -11.20538 -11.14624 -10.86427 -10.45191 -10.36219 -9.90780 -9.66797 -8.54957 -7.80590 -5.23217 -0.53060 -0.13311 1.38239 1.44594 1.48625 1.66623 2.20206 2.49325 2.51902 3.01537 3.04447 3.34500 3.44687 3.57145 3.62686 3.90242 4.01516 4.05848 4.08086 4.27376 4.41816 4.47256 4.48659 4.60759 4.65889 4.73168 4.79017 4.81931 4.90688 4.94449 5.01443 5.06731 5.13614 5.24596 5.26938 5.38759 5.42834 5.54336 5.58833 5.62416 5.68144 5.76321 5.79425 5.90255 6.46835 6.59454 7.20069 7.26628 8.00077 8.38516 9.22435 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004442 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.391161 B = 6301.823495 C = 6898.889037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.022 4.022 3 Si 0.924 3.076 4 H -0.299 1.299 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.234 4.234 8 H 0.046 0.954 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.173 3.827 16 H 0.059 0.941 17 C 0.131 3.869 18 N -0.680 5.680 19 C 0.545 3.455 20 O -0.579 6.579 21 C -0.159 4.159 22 C -0.089 4.089 23 C 0.076 3.924 24 F -0.136 7.136 25 C -0.081 4.081 26 C -0.119 4.119 27 C 0.125 3.875 28 F -0.128 7.128 29 H 0.246 0.754 30 H 0.038 0.962 31 H 0.004 0.996 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.409 0.591 43 H 0.140 0.860 44 H 0.192 0.808 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.371 -5.833 -7.426 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.755 3.245 4 H -0.227 1.227 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.064 0.936 9 N -0.310 5.310 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.065 3.935 16 H 0.077 0.923 17 C 0.007 3.993 18 N -0.328 5.328 19 C 0.332 3.668 20 O -0.461 6.461 21 C -0.163 4.163 22 C -0.109 4.109 23 C 0.057 3.943 24 F -0.114 7.114 25 C -0.099 4.099 26 C -0.138 4.138 27 C 0.104 3.896 28 F -0.106 7.106 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.247 0.753 43 H 0.158 0.842 44 H 0.209 0.791 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.729 -5.925 -7.652 10.371 hybrid contribution 0.277 1.504 0.609 1.646 sum -3.452 -4.421 -7.043 9.004 Atomic orbital electron populations 1.70080 1.05176 1.24992 1.55628 1.25198 0.95598 0.99161 1.01878 0.85961 0.78651 0.83087 0.76772 1.22730 1.21892 1.20832 1.18924 0.91579 0.85768 1.40257 0.93612 1.43761 1.34168 1.01792 1.51242 1.20784 0.87480 0.95659 0.89599 1.21943 0.97174 0.99266 0.98746 1.20908 0.95991 0.98898 0.98319 1.20273 0.99878 0.97678 0.95928 1.21280 0.98470 0.99763 0.97275 1.20694 0.95038 0.88425 0.89363 0.92350 1.21551 0.91566 0.95341 0.90855 1.45656 1.18529 1.57272 1.11348 1.18226 0.86713 0.79208 0.82608 1.90742 1.23425 1.57360 1.74622 1.19906 0.95467 1.06027 0.94886 1.21240 0.91545 0.97494 1.00638 1.17663 0.81134 1.01442 0.94107 1.91535 1.39821 1.91479 1.88602 1.21563 0.97457 0.97987 0.92914 1.21335 0.91556 0.98725 1.02137 1.18080 0.81693 0.98500 0.91318 1.91552 1.40808 1.91083 1.87205 0.94419 0.94348 0.97792 0.92100 0.92165 0.93953 0.91884 0.91970 0.91967 0.90867 0.93969 0.93740 0.91196 0.75331 0.84222 0.79055 0.79180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.93 11.13 21.65 0.24 -47.68 16 2 C -0.02 -1.11 4.86 84.86 0.41 -0.70 16 3 Si 0.92 44.37 29.58 68.60 2.03 46.40 16 4 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.23 -11.57 7.62 84.03 0.64 -10.93 16 8 H 0.05 2.41 6.75 -2.91 -0.02 2.39 16 9 N -0.59 -24.97 1.77 -674.25 -1.19 -26.16 16 10 C 0.19 8.00 4.66 86.49 0.40 8.40 16 11 C -0.13 -4.33 5.71 30.23 0.17 -4.16 16 12 C -0.10 -3.20 5.51 29.76 0.16 -3.04 16 13 C -0.10 -2.75 5.16 28.62 0.15 -2.61 16 14 C -0.13 -3.96 5.06 29.40 0.15 -3.81 16 15 C 0.17 6.18 2.19 45.98 0.10 6.28 16 16 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 17 C 0.13 5.00 4.52 86.38 0.39 5.39 16 18 N -0.68 -27.04 4.67 -466.13 -2.18 -29.22 16 19 C 0.55 22.55 7.77 86.74 0.67 23.22 16 20 O -0.58 -27.05 15.34 -3.92 -0.06 -27.11 16 21 C -0.16 -5.58 5.88 -20.06 -0.12 -5.69 16 22 C -0.09 -2.88 9.51 22.57 0.21 -2.66 16 23 C 0.08 2.02 7.29 22.33 0.16 2.18 16 24 F -0.14 -3.81 17.26 44.97 0.78 -3.03 16 25 C -0.08 -1.52 10.01 22.35 0.22 -1.30 16 26 C -0.12 -2.41 10.01 22.27 0.22 -2.18 16 27 C 0.12 3.81 7.28 22.67 0.17 3.98 16 28 F -0.13 -4.47 15.55 44.97 0.70 -3.77 16 29 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 30 H 0.04 1.88 6.47 -2.38 -0.02 1.86 16 31 H 0.00 0.18 8.02 -2.39 -0.02 0.16 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.79 7.31 -2.39 -0.02 1.78 16 34 H 0.04 1.59 7.48 -2.39 -0.02 1.57 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.56 7.35 -2.39 -0.02 1.54 16 38 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 39 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.04 1.93 6.84 -2.39 -0.02 1.91 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.41 16.56 6.11 -92.71 -0.57 15.99 16 43 H 0.14 4.90 6.41 -2.91 -0.02 4.88 16 44 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.19 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -62.17 363.70 4.90 -57.27 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.46 Total: 20.93 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 4.13 Total: 12.37 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -3.13 Total: -103.06 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.06 Total: -27.11 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.48 Total: -6.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -62.17 4.90 -57.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.766 kcal (2) G-P(sol) polarization free energy of solvation -62.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds