Wall clock time and date at job start Tue Mar 31 2020 21:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47308 * 85.61333 * 3 2 1 5 5 H 1.48498 * 109.47100 * 325.60788 * 3 2 1 6 6 H 1.48502 * 109.47010 * 205.61327 * 3 2 1 7 7 C 1.38811 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99799 * 195.61733 * 7 2 1 9 9 N 1.36932 * 120.00230 * 15.61260 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13293 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.40623 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21571 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.47696 * 120.00192 * 179.97438 * 19 18 17 22 22 C 1.39654 * 120.15341 * 359.72966 * 21 19 18 23 23 C 1.38073 * 119.85000 * 179.81211 * 22 21 19 24 24 F 1.35097 * 119.91898 * 180.23274 * 23 22 21 25 25 C 1.38654 * 120.16481 * 0.43787 * 23 22 21 26 26 C 1.38191 * 120.31731 * 359.78956 * 25 23 22 27 27 C 1.38308 * 120.14111 * 0.02562 * 26 25 23 28 28 F 1.35108 * 120.08146 * 179.97438 * 27 26 25 29 29 H 0.96997 * 119.99591 * 0.02562 * 1 2 3 30 30 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 31 31 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 32 32 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 33 33 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 34 34 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 35 35 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 36 36 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 37 37 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 38 38 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 39 39 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 40 40 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 41 41 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 42 42 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 43 43 H 1.08003 * 120.07632 * 359.97438 * 22 21 19 44 44 H 1.07997 * 119.84170 * 179.77361 * 25 23 22 45 45 H 1.07991 * 119.92757 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4050 2.1000 1.3959 5 1 1.4972 2.6241 -0.7908 6 1 3.5911 1.4152 -0.6053 7 6 2.0103 -1.2021 0.0005 8 1 3.0604 -1.2193 0.2524 9 7 1.3635 -2.3663 -0.3181 10 6 0.2006 -2.3042 -1.2250 11 6 0.2152 -3.4482 -2.2603 12 6 1.6189 -3.6790 -2.7633 13 6 2.2959 -4.7417 -1.9033 14 6 2.9188 -4.2220 -0.6764 15 6 1.8442 -3.6047 0.2525 16 1 1.0131 -4.3019 0.3593 17 6 2.4573 -3.3284 1.6267 18 7 1.4771 -2.6387 2.4691 19 6 1.7981 -2.2926 3.7314 20 8 2.9014 -2.5524 4.1710 21 6 0.8100 -1.5967 4.5804 22 6 -0.4560 -1.2907 4.0765 23 6 -1.3762 -0.6435 4.8770 24 9 -2.6029 -0.3510 4.3925 25 6 -1.0430 -0.2891 6.1754 26 6 0.2094 -0.5843 6.6794 27 6 1.1398 -1.2357 5.8902 28 9 2.3641 -1.5233 6.3840 29 1 -0.4849 0.8400 -0.0004 30 1 -0.7130 -2.3688 -0.6340 31 1 0.2129 -1.3499 -1.7515 32 1 -0.4305 -3.1855 -3.0983 33 1 -0.1557 -4.3603 -1.7927 34 1 2.1840 -2.7488 -2.7039 35 1 1.5830 -4.0176 -3.7988 36 1 3.0646 -5.2323 -2.5006 37 1 1.5493 -5.4852 -1.6242 38 1 3.6505 -3.4579 -0.9390 39 1 3.4201 -5.0378 -0.1557 40 1 2.7392 -4.2714 2.0951 41 1 3.3416 -2.7017 1.5107 42 1 0.5965 -2.4317 2.1184 43 1 -0.7156 -1.5621 3.0639 44 1 -1.7655 0.2202 6.7957 45 1 0.4624 -0.3051 7.6915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:20 Heat of formation + Delta-G solvation = -81.935139 kcal Electronic energy + Delta-G solvation = -30765.979918 eV Core-core repulsion = 26419.855554 eV Total energy + Delta-G solvation = -4346.124364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.83643 -48.71413 -39.67393 -38.40587 -37.63557 -34.55213 -33.53001 -32.22943 -31.12520 -30.67404 -29.92745 -27.09830 -25.75155 -24.17413 -23.50558 -22.80067 -21.85929 -20.25065 -19.69410 -19.23378 -18.16453 -17.30956 -17.08185 -16.37773 -15.86100 -15.74814 -15.56639 -15.21178 -14.93808 -14.66829 -14.40751 -14.33125 -14.16553 -14.02033 -13.58990 -13.45450 -13.15139 -12.83134 -12.75312 -12.45452 -12.13312 -11.97801 -11.83019 -11.49439 -11.40738 -11.27346 -11.12559 -10.86437 -10.62769 -10.23829 -10.06115 -10.01495 -9.74347 -9.65434 -9.59161 -9.38650 -9.30340 -8.57118 -8.46446 -8.26129 -6.74786 -5.87559 -3.31710 0.64451 0.98576 2.94826 3.33241 3.41576 3.44502 3.60643 3.85469 4.14249 4.19985 4.44153 4.52493 4.74612 5.03642 5.15567 5.17853 5.31128 5.41080 5.46070 5.57538 5.62692 5.79591 5.83789 5.88700 5.95683 5.99183 6.04583 6.08484 6.12290 6.27430 6.35641 6.53149 6.58175 6.62728 6.66382 6.71474 6.72734 6.81262 6.95628 7.06372 7.15240 7.36053 7.61387 7.78663 8.16146 8.38103 8.75881 9.15801 9.80012 10.25312 11.19044 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004443 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.347815 B = 6301.218367 C = 6898.678054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.889 3.111 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.129 3.871 18 N -0.680 5.680 19 C 0.552 3.448 20 O -0.544 6.544 21 C -0.133 4.133 22 C -0.080 4.080 23 C 0.082 3.918 24 F -0.132 7.132 25 C -0.108 4.108 26 C -0.142 4.142 27 C 0.143 3.857 28 F -0.113 7.113 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.411 0.589 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -4.922 6.433 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.185 4.185 3 Si 0.719 3.281 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.176 4.176 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.005 3.995 18 N -0.329 5.329 19 C 0.337 3.663 20 O -0.424 6.424 21 C -0.137 4.137 22 C -0.099 4.099 23 C 0.063 3.937 24 F -0.110 7.110 25 C -0.127 4.127 26 C -0.161 4.161 27 C 0.122 3.878 28 F -0.091 7.091 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.248 0.752 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.794 -4.992 6.680 8.795 hybrid contribution -0.011 1.230 -0.343 1.277 sum -2.806 -3.762 6.337 7.886 Atomic orbital electron populations 1.70006 1.04927 1.25478 1.54157 1.24897 0.95148 0.97906 1.00554 0.86486 0.79498 0.84429 0.77658 1.21566 1.21651 1.20521 1.19028 0.92362 0.84656 1.42012 0.91951 1.43737 1.34446 1.01637 1.50781 1.21073 0.88439 0.95569 0.89347 1.22117 0.96075 1.00449 0.99553 1.20939 0.97066 0.99815 0.96578 1.20290 0.99014 0.97921 0.96623 1.21362 0.99635 0.99756 0.96867 1.20526 0.94128 0.89489 0.89500 0.93691 1.21548 0.92472 0.95262 0.90263 1.45597 1.18665 1.57423 1.11225 1.17747 0.86550 0.79642 0.82389 1.90784 1.21994 1.55755 1.73865 1.20072 0.95526 1.04050 0.94054 1.21425 0.91318 0.96291 1.00903 1.17487 0.81657 1.01530 0.93026 1.91540 1.39826 1.91447 1.88211 1.21096 0.97159 1.00220 0.94209 1.20905 0.92750 1.01335 1.01090 1.17690 0.81406 0.97381 0.91304 1.91594 1.39729 1.90736 1.87057 0.93670 0.95737 0.90851 0.93286 0.93828 0.90760 0.94208 0.94066 0.93532 0.91754 0.93273 0.92865 0.91077 0.75152 0.82464 0.83593 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.85 11.13 55.49 0.62 -22.23 16 2 C 0.01 0.34 4.86 -17.43 -0.08 0.26 16 3 Si 0.89 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -5.98 7.62 -15.06 -0.11 -6.10 16 8 H 0.06 1.57 6.75 -52.48 -0.35 1.22 16 9 N -0.58 -12.18 1.77 -164.25 -0.29 -12.47 16 10 C 0.18 3.75 4.70 -2.76 -0.01 3.74 16 11 C -0.14 -2.45 5.71 -27.12 -0.15 -2.60 16 12 C -0.11 -1.75 5.51 -28.02 -0.15 -1.90 16 13 C -0.10 -1.53 5.16 -29.79 -0.15 -1.69 16 14 C -0.14 -2.20 5.06 -28.58 -0.14 -2.35 16 15 C 0.17 3.12 2.19 -67.97 -0.15 2.97 16 16 H 0.05 0.79 8.06 -51.93 -0.42 0.38 16 17 C 0.13 2.40 4.52 -4.05 -0.02 2.39 16 18 N -0.68 -13.00 4.67 -61.30 -0.29 -13.29 16 19 C 0.55 10.94 7.77 -12.40 -0.10 10.85 16 20 O -0.54 -12.22 15.34 5.30 0.08 -12.14 16 21 C -0.13 -2.29 5.88 -104.92 -0.62 -2.90 16 22 C -0.08 -1.26 9.51 -39.11 -0.37 -1.64 16 23 C 0.08 1.16 7.29 -39.49 -0.29 0.87 16 24 F -0.13 -1.94 17.26 2.25 0.04 -1.90 16 25 C -0.11 -1.23 10.01 -39.45 -0.39 -1.62 16 26 C -0.14 -1.68 10.01 -39.57 -0.40 -2.08 16 27 C 0.14 2.24 7.28 -38.97 -0.28 1.96 16 28 F -0.11 -1.97 15.55 2.25 0.04 -1.94 16 29 H 0.25 6.46 8.31 -40.82 -0.34 6.12 16 30 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 31 H 0.07 1.75 6.46 -51.93 -0.34 1.41 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 34 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.48 6.84 -51.92 -0.36 1.12 16 42 H 0.41 7.94 6.11 -40.82 -0.25 7.69 16 43 H 0.16 2.61 6.41 -52.48 -0.34 2.27 16 44 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -27.04 363.74 -8.92 -35.96 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.13 Total: 6.40 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.44 Total: 0.16 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.04 Total: -47.99 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.07 Total: -3.83 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.04 -8.92 -35.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.979 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds