Wall clock time and date at job start Tue Mar 31 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47308 * 85.61333 * 3 2 1 5 5 H 1.48498 * 109.47100 * 325.60788 * 3 2 1 6 6 H 1.48502 * 109.47010 * 205.61327 * 3 2 1 7 7 C 1.38811 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99799 * 195.61733 * 7 2 1 9 9 N 1.36932 * 120.00230 * 15.61260 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13293 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.40623 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21571 * 119.99845 * 0.02562 * 19 18 17 21 21 C 1.47696 * 120.00192 * 179.97438 * 19 18 17 22 22 C 1.39654 * 120.15341 * 359.72966 * 21 19 18 23 23 C 1.38073 * 119.85000 * 179.81211 * 22 21 19 24 24 F 1.35097 * 119.91898 * 180.23274 * 23 22 21 25 25 C 1.38654 * 120.16481 * 0.43787 * 23 22 21 26 26 C 1.38191 * 120.31731 * 359.78956 * 25 23 22 27 27 C 1.38308 * 120.14111 * 0.02562 * 26 25 23 28 28 F 1.35108 * 120.08146 * 179.97438 * 27 26 25 29 29 H 0.96997 * 119.99591 * 0.02562 * 1 2 3 30 30 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 31 31 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 32 32 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 33 33 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 34 34 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 35 35 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 36 36 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 37 37 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 38 38 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 39 39 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 40 40 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 41 41 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 42 42 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 43 43 H 1.08003 * 120.07632 * 359.97438 * 22 21 19 44 44 H 1.07997 * 119.84170 * 179.77361 * 25 23 22 45 45 H 1.07991 * 119.92757 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4050 2.1000 1.3959 5 1 1.4972 2.6241 -0.7908 6 1 3.5911 1.4152 -0.6053 7 6 2.0103 -1.2021 0.0005 8 1 3.0604 -1.2193 0.2524 9 7 1.3635 -2.3663 -0.3181 10 6 0.2006 -2.3042 -1.2250 11 6 0.2152 -3.4482 -2.2603 12 6 1.6189 -3.6790 -2.7633 13 6 2.2959 -4.7417 -1.9033 14 6 2.9188 -4.2220 -0.6764 15 6 1.8442 -3.6047 0.2525 16 1 1.0131 -4.3019 0.3593 17 6 2.4573 -3.3284 1.6267 18 7 1.4771 -2.6387 2.4691 19 6 1.7981 -2.2926 3.7314 20 8 2.9014 -2.5524 4.1710 21 6 0.8100 -1.5967 4.5804 22 6 -0.4560 -1.2907 4.0765 23 6 -1.3762 -0.6435 4.8770 24 9 -2.6029 -0.3510 4.3925 25 6 -1.0430 -0.2891 6.1754 26 6 0.2094 -0.5843 6.6794 27 6 1.1398 -1.2357 5.8902 28 9 2.3641 -1.5233 6.3840 29 1 -0.4849 0.8400 -0.0004 30 1 -0.7130 -2.3688 -0.6340 31 1 0.2129 -1.3499 -1.7515 32 1 -0.4305 -3.1855 -3.0983 33 1 -0.1557 -4.3603 -1.7927 34 1 2.1840 -2.7488 -2.7039 35 1 1.5830 -4.0176 -3.7988 36 1 3.0646 -5.2323 -2.5006 37 1 1.5493 -5.4852 -1.6242 38 1 3.6505 -3.4579 -0.9390 39 1 3.4201 -5.0378 -0.1557 40 1 2.7392 -4.2714 2.0951 41 1 3.3416 -2.7017 1.5107 42 1 0.5965 -2.4317 2.1184 43 1 -0.7156 -1.5621 3.0639 44 1 -1.7655 0.2202 6.7957 45 1 0.4624 -0.3051 7.6915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:18 Heat of formation + Delta-G solvation = -95.020251 kcal Electronic energy + Delta-G solvation = -30766.547331 eV Core-core repulsion = 26419.855554 eV Total energy + Delta-G solvation = -4346.691778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.98041 -49.97365 -41.11695 -39.81222 -39.00624 -36.06593 -35.24730 -33.62237 -32.52906 -32.28257 -31.07375 -28.67634 -27.34831 -25.43636 -25.18797 -24.05114 -23.20653 -21.72371 -21.10274 -20.79923 -19.52749 -18.51088 -18.32644 -17.95614 -17.33006 -17.14018 -17.00802 -16.46389 -16.42079 -16.20691 -15.94105 -15.67728 -15.52543 -15.37044 -15.21186 -14.83716 -14.41746 -14.28767 -14.13557 -13.72536 -13.63571 -13.39241 -13.20915 -12.98528 -12.88183 -12.83640 -12.71507 -12.55298 -12.38285 -12.02046 -11.55507 -11.39438 -11.32529 -11.20158 -11.14769 -10.86731 -10.45162 -10.36013 -9.90756 -9.66826 -8.55166 -7.80633 -5.23125 -0.53118 -0.13316 1.37969 1.44680 1.48855 1.66579 2.20214 2.49227 2.51909 3.01528 3.04453 3.34509 3.44713 3.57219 3.62684 3.90233 4.01547 4.05838 4.08153 4.27433 4.41551 4.47269 4.48855 4.61101 4.65731 4.73152 4.78982 4.81907 4.90717 4.94448 5.01394 5.06645 5.13717 5.24605 5.27081 5.38848 5.42867 5.54307 5.58896 5.62417 5.68218 5.76469 5.79499 5.90452 6.46868 6.59357 7.20051 7.26605 8.00062 8.38529 9.22344 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.004443 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.347815 B = 6301.218367 C = 6898.678054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.022 4.022 3 Si 0.924 3.076 4 H -0.300 1.300 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.046 0.954 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.173 3.827 16 H 0.058 0.942 17 C 0.131 3.869 18 N -0.680 5.680 19 C 0.545 3.455 20 O -0.579 6.579 21 C -0.159 4.159 22 C -0.089 4.089 23 C 0.076 3.924 24 F -0.136 7.136 25 C -0.081 4.081 26 C -0.119 4.119 27 C 0.125 3.875 28 F -0.128 7.128 29 H 0.246 0.754 30 H 0.005 0.995 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.409 0.591 43 H 0.140 0.860 44 H 0.192 0.808 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.383 -5.837 7.407 10.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.755 3.245 4 H -0.228 1.228 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.064 0.936 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.065 3.935 16 H 0.076 0.924 17 C 0.007 3.993 18 N -0.328 5.328 19 C 0.332 3.668 20 O -0.462 6.462 21 C -0.163 4.163 22 C -0.109 4.109 23 C 0.056 3.944 24 F -0.114 7.114 25 C -0.099 4.099 26 C -0.138 4.138 27 C 0.104 3.896 28 F -0.106 7.106 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.247 0.753 43 H 0.158 0.842 44 H 0.209 0.791 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -3.738 -5.929 7.633 10.363 hybrid contribution 0.267 1.506 -0.605 1.645 sum -3.470 -4.423 7.028 9.000 Atomic orbital electron populations 1.70084 1.05174 1.24962 1.55665 1.25199 0.95602 0.99161 1.01901 0.85945 0.78718 0.83145 0.76666 1.22781 1.21899 1.20798 1.18935 0.91614 0.85775 1.40156 0.93602 1.43768 1.34180 1.01796 1.51225 1.20860 0.87452 0.95671 0.89570 1.21991 0.97150 0.99257 0.98715 1.20901 0.95974 0.98907 0.98312 1.20275 0.99887 0.97682 0.95927 1.21272 0.98480 0.99741 0.97264 1.20695 0.95062 0.88429 0.89338 0.92359 1.21555 0.91531 0.95346 0.90896 1.45655 1.18536 1.57314 1.11299 1.18227 0.86715 0.79214 0.82601 1.90743 1.23497 1.57367 1.74543 1.19904 0.95551 1.05978 0.94854 1.21244 0.91562 0.97493 1.00614 1.17663 0.81128 1.01535 0.94029 1.91533 1.39956 1.91453 1.88495 1.21566 0.97487 0.97944 0.92916 1.21336 0.91524 0.98756 1.02145 1.18079 0.81724 0.98468 0.91308 1.91553 1.40915 1.91079 1.87097 0.94427 0.97730 0.94331 0.92143 0.92199 0.93937 0.91883 0.91970 0.91985 0.93938 0.90860 0.91206 0.93735 0.75339 0.84227 0.79057 0.79180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.90 11.13 21.65 0.24 -47.65 16 2 C -0.02 -1.13 4.86 84.86 0.41 -0.71 16 3 Si 0.92 44.36 29.58 68.60 2.03 46.39 16 4 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.23 -11.54 7.62 84.03 0.64 -10.90 16 8 H 0.05 2.42 6.75 -2.91 -0.02 2.40 16 9 N -0.59 -24.96 1.77 -673.56 -1.19 -26.15 16 10 C 0.19 7.98 4.70 86.61 0.41 8.39 16 11 C -0.13 -4.33 5.71 30.34 0.17 -4.16 16 12 C -0.10 -3.19 5.51 29.76 0.16 -3.03 16 13 C -0.10 -2.76 5.16 28.61 0.15 -2.61 16 14 C -0.13 -3.95 5.06 29.39 0.15 -3.80 16 15 C 0.17 6.17 2.19 45.99 0.10 6.27 16 16 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 17 C 0.13 4.99 4.52 86.38 0.39 5.38 16 18 N -0.68 -27.04 4.67 -466.13 -2.18 -29.21 16 19 C 0.55 22.54 7.77 86.74 0.67 23.21 16 20 O -0.58 -27.04 15.34 -3.94 -0.06 -27.10 16 21 C -0.16 -5.58 5.88 -20.06 -0.12 -5.69 16 22 C -0.09 -2.88 9.51 22.57 0.21 -2.66 16 23 C 0.08 2.02 7.29 22.33 0.16 2.18 16 24 F -0.14 -3.81 17.26 44.97 0.78 -3.03 16 25 C -0.08 -1.52 10.01 22.36 0.22 -1.30 16 26 C -0.12 -2.41 10.01 22.28 0.22 -2.19 16 27 C 0.12 3.82 7.28 22.67 0.17 3.98 16 28 F -0.13 -4.47 15.55 44.97 0.70 -3.77 16 29 H 0.25 12.98 8.31 -92.71 -0.77 12.21 16 30 H 0.00 0.21 8.02 -2.38 -0.02 0.19 16 31 H 0.04 1.89 6.46 -2.39 -0.02 1.87 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 34 H 0.04 1.59 7.49 -2.39 -0.02 1.57 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.56 7.35 -2.39 -0.02 1.54 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.04 1.93 6.84 -2.38 -0.02 1.91 16 42 H 0.41 16.55 6.11 -92.70 -0.57 15.98 16 43 H 0.14 4.91 6.41 -2.91 -0.02 4.89 16 44 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.19 2.29 8.06 -2.92 -0.02 2.26 16 Total: -1.00 -62.11 363.74 4.91 -57.21 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.46 Total: 20.94 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 4.13 Total: 12.38 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.12 Total: -103.01 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 1.48 Total: -6.80 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.11 4.91 -57.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.814 kcal (2) G-P(sol) polarization free energy of solvation -62.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds