Wall clock time and date at job start Tue Mar 31 2020 21:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47076 * 270.00077 * 3 2 1 5 5 H 1.48493 * 109.47085 * 30.00359 * 3 2 1 6 6 H 1.48506 * 109.46997 * 150.00028 * 3 2 1 7 7 C 1.38814 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99818 * 164.51427 * 7 2 1 9 9 N 1.36927 * 120.00076 * 344.51113 * 7 2 1 10 10 C 1.47319 * 118.66110 * 331.63554 * 9 7 2 11 11 C 1.53949 * 112.30142 * 222.10003 * 10 9 7 12 12 C 1.50884 * 109.99708 * 40.57624 * 11 10 9 13 13 C 1.52561 * 109.35691 * 268.17733 * 12 11 10 14 14 C 1.47097 * 114.32847 * 85.01261 * 13 12 11 15 15 C 1.44576 * 118.64538 * 151.66934 * 9 7 2 16 16 H 1.09000 * 109.45211 * 209.33944 * 15 9 7 17 17 C 1.53002 * 109.42351 * 329.27100 * 15 9 7 18 18 N 1.46501 * 109.47283 * 305.11814 * 17 15 9 19 19 C 1.34776 * 119.99839 * 180.02562 * 18 17 15 20 20 O 1.21564 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.47727 * 119.99845 * 179.97438 * 19 18 17 22 22 C 1.39650 * 120.11080 * 179.97438 * 21 19 18 23 23 C 1.37852 * 119.92544 * 179.97438 * 22 21 19 24 24 C 1.38603 * 120.14884 * 0.02637 * 23 22 21 25 25 F 1.35097 * 119.89236 * 179.97438 * 24 23 22 26 26 C 1.38838 * 120.22097 * 359.97438 * 24 23 22 27 27 F 1.35104 * 119.96401 * 180.02562 * 26 24 23 28 28 C 1.38061 * 120.07015 * 359.74355 * 26 24 23 29 29 H 0.97003 * 120.00217 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.80177 * 101.41300 * 10 9 7 31 31 H 1.08999 * 108.92692 * 342.87179 * 10 9 7 32 32 H 1.08999 * 109.37353 * 280.44525 * 11 10 9 33 33 H 1.09004 * 109.36802 * 160.70225 * 11 10 9 34 34 H 1.09000 * 109.48695 * 28.14326 * 12 11 10 35 35 H 1.08995 * 109.48952 * 148.18759 * 12 11 10 36 36 H 1.09004 * 108.51190 * 206.26733 * 13 12 11 37 37 H 1.09002 * 108.51961 * 323.91612 * 13 12 11 38 38 H 1.08997 * 109.32668 * 57.45399 * 14 13 12 39 39 H 1.09005 * 109.32959 * 176.93069 * 14 13 12 40 40 H 1.09001 * 109.47212 * 65.12607 * 17 15 9 41 41 H 1.09005 * 109.47116 * 185.11664 * 17 15 9 42 42 H 0.96995 * 119.99753 * 0.02562 * 18 17 15 43 43 H 1.07999 * 120.03884 * 359.95976 * 22 21 19 44 44 H 1.08001 * 119.92565 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.07556 * 180.26129 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2190 -0.2503 9 7 1.3629 -2.3666 0.3156 10 6 0.2036 -2.3067 1.2228 11 6 0.2092 -3.4498 2.2540 12 6 1.6114 -3.6805 2.7610 13 6 2.2912 -4.7427 1.9024 14 6 2.9176 -4.2221 0.6775 15 6 1.8456 -3.6046 -0.2540 16 1 1.0150 -4.3019 -0.3637 17 6 2.4622 -3.3269 -1.6265 18 7 1.4848 -2.6344 -2.4699 19 6 1.8094 -2.2867 -3.7310 20 8 2.9130 -2.5481 -4.1686 21 6 0.8236 -1.5890 -4.5817 22 6 1.1576 -1.2272 -5.8885 23 6 0.2346 -0.5767 -6.6792 24 6 -1.0240 -0.2805 -6.1800 25 9 -1.9244 0.3576 -6.9592 26 6 -1.3626 -0.6374 -4.8817 27 9 -2.5911 -0.3466 -4.4005 28 6 -0.4472 -1.2943 -4.0838 29 1 -0.4850 0.8401 0.0004 30 1 -0.7094 -2.3687 0.6306 31 1 0.2170 -1.3534 1.7511 32 1 -0.1602 -4.3617 1.7849 33 1 -0.4385 -3.1856 3.0900 34 1 2.1765 -2.7502 2.7037 35 1 1.5727 -4.0193 3.7962 36 1 3.0582 -5.2334 2.5017 37 1 1.5469 -5.4867 1.6184 38 1 3.6483 -3.4581 0.9427 39 1 3.4228 -5.0356 0.1568 40 1 3.3471 -2.7017 -1.5074 41 1 2.7440 -4.2695 -2.0957 42 1 0.6042 -2.4263 -2.1208 43 1 2.1380 -1.4565 -6.2792 44 1 0.4931 -0.2965 -7.6897 45 1 -0.7119 -1.5757 -3.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:42 Heat of formation + Delta-G solvation = -83.933543 kcal Electronic energy + Delta-G solvation = -30519.179660 eV Core-core repulsion = 26172.968638 eV Total energy + Delta-G solvation = -4346.211022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.44967 -48.50230 -39.87211 -38.45392 -37.57135 -34.61025 -33.56392 -32.13329 -30.94511 -30.66132 -30.39672 -27.08837 -25.74355 -23.92837 -23.52499 -23.08752 -21.92485 -20.26708 -19.71531 -19.24789 -18.31585 -17.39366 -17.11290 -16.37487 -16.29136 -15.93058 -15.63158 -15.01387 -14.92167 -14.73422 -14.47065 -14.43450 -14.20968 -14.08742 -13.61869 -13.55139 -13.18675 -12.90873 -12.86621 -12.33989 -12.18599 -12.01094 -11.93785 -11.50431 -11.40553 -11.28734 -11.14184 -10.87370 -10.64851 -10.25447 -10.08243 -10.03328 -9.76152 -9.69802 -9.61736 -9.44356 -9.15206 -8.76916 -8.47979 -8.30301 -6.76109 -5.88897 -3.33595 0.58551 0.99625 2.87175 3.32220 3.40579 3.42912 3.61106 3.74551 3.87534 4.30374 4.42584 4.51338 4.80298 5.02204 5.14539 5.18554 5.29852 5.39836 5.43893 5.59325 5.64621 5.74776 5.79528 5.84633 5.94051 5.96375 6.02276 6.09238 6.19356 6.27371 6.34281 6.51458 6.56180 6.61011 6.65003 6.66546 6.70877 6.80276 6.93873 7.04097 7.12159 7.35157 7.60545 7.76863 8.13439 8.36761 8.71416 9.14584 9.78785 10.23858 11.17580 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004074 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.134425 B = 6870.619480 C = 7431.913812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.172 3.828 16 H 0.045 0.955 17 C 0.129 3.871 18 N -0.680 5.680 19 C 0.554 3.446 20 O -0.555 6.555 21 C -0.104 4.104 22 C -0.047 4.047 23 C -0.138 4.138 24 C 0.081 3.919 25 F -0.129 7.129 26 C 0.064 3.936 27 F -0.125 7.125 28 C -0.081 4.081 29 H 0.254 0.746 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.411 0.589 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -5.893 -6.062 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.185 4.185 3 Si 0.719 3.281 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.382 4.382 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.063 3.937 16 H 0.063 0.937 17 C 0.004 3.996 18 N -0.329 5.329 19 C 0.340 3.660 20 O -0.436 6.436 21 C -0.108 4.108 22 C -0.066 4.066 23 C -0.157 4.157 24 C 0.060 3.940 25 F -0.108 7.108 26 C 0.044 3.956 27 F -0.103 7.103 28 C -0.101 4.101 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.676 -5.922 -6.316 8.684 hybrid contribution -0.429 1.411 0.317 1.508 sum -1.105 -4.512 -5.999 7.587 Atomic orbital electron populations 1.70001 1.04952 1.25564 1.53950 1.24906 0.95138 0.97923 1.00496 0.86503 0.79416 0.84357 0.77790 1.21462 1.21663 1.20581 1.19001 0.92296 0.84622 1.42284 0.91965 1.43654 1.34511 1.01658 1.50718 1.20950 0.88535 0.95564 0.89431 1.22067 0.96096 1.00451 0.99585 1.20947 0.97074 0.99808 0.96604 1.20287 0.99022 0.97925 0.96621 1.21368 0.99618 0.99783 0.96900 1.20527 0.94118 0.89489 0.89553 0.93683 1.21550 0.92527 0.95232 0.90280 1.45646 1.18719 1.57042 1.11459 1.17863 0.86599 0.79315 0.82250 1.90726 1.22270 1.56444 1.74131 1.20037 0.93802 1.01569 0.95344 1.21186 0.99807 0.93871 0.91786 1.20989 0.91195 1.01661 1.01873 1.17918 0.88900 0.98843 0.88320 1.91520 1.66386 1.79192 1.73669 1.17494 0.82743 1.03520 0.91856 1.91556 1.39244 1.91535 1.88006 1.21471 0.91890 0.96050 1.00645 0.93615 0.95820 0.90888 0.93784 0.93243 0.90767 0.94204 0.94061 0.93523 0.91780 0.93268 0.91044 0.92830 0.75086 0.83053 0.83302 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.73 11.13 55.49 0.62 -22.11 16 2 C 0.01 0.35 4.86 -17.43 -0.08 0.27 16 3 Si 0.89 20.75 29.58 -169.99 -5.03 15.72 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -5.91 7.61 -15.06 -0.11 -6.03 16 8 H 0.06 1.53 6.75 -52.49 -0.35 1.18 16 9 N -0.58 -11.97 1.77 -164.70 -0.29 -12.26 16 10 C 0.18 3.71 4.65 -3.10 -0.01 3.70 16 11 C -0.14 -2.43 5.72 -27.30 -0.16 -2.58 16 12 C -0.11 -1.73 5.51 -28.02 -0.15 -1.89 16 13 C -0.10 -1.51 5.16 -29.79 -0.15 -1.66 16 14 C -0.14 -2.16 5.06 -28.58 -0.14 -2.30 16 15 C 0.17 3.03 2.19 -67.98 -0.15 2.88 16 16 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 17 C 0.13 2.30 4.52 -4.04 -0.02 2.28 16 18 N -0.68 -12.40 4.66 -61.28 -0.29 -12.68 16 19 C 0.55 10.13 7.77 -12.38 -0.10 10.04 16 20 O -0.55 -11.32 16.34 5.31 0.09 -11.23 16 21 C -0.10 -1.65 5.87 -104.97 -0.62 -2.27 16 22 C -0.05 -0.63 9.59 -39.20 -0.38 -1.01 16 23 C -0.14 -1.63 10.01 -39.59 -0.40 -2.03 16 24 C 0.08 1.11 7.31 -39.22 -0.29 0.83 16 25 F -0.13 -1.80 17.17 2.25 0.04 -1.76 16 26 C 0.06 0.98 7.30 -39.42 -0.29 0.69 16 27 F -0.12 -2.05 17.18 2.25 0.04 -2.01 16 28 C -0.08 -1.27 9.51 -39.13 -0.37 -1.64 16 29 H 0.25 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 31 H 0.07 1.73 6.46 -51.93 -0.34 1.39 16 32 H 0.04 0.71 7.32 -51.93 -0.38 0.33 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.40 7.48 -51.93 -0.39 1.01 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 40 H 0.07 1.42 6.84 -51.93 -0.36 1.07 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.41 7.70 6.10 -40.82 -0.25 7.45 16 43 H 0.15 1.86 7.65 -52.49 -0.40 1.46 16 44 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.16 2.59 6.40 -52.49 -0.34 2.25 16 LS Contribution 365.39 15.07 5.51 5.51 Total: -1.00 -25.90 365.39 -8.85 -34.75 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.11 Total: 6.80 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.42 Total: -0.72 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.04 Total: -47.06 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.90 -8.85 -34.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.188 kcal (2) G-P(sol) polarization free energy of solvation -25.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds