Wall clock time and date at job start Tue Mar 31 2020 21:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99966 * 2 1 4 4 H 1.48496 * 109.47076 * 270.00077 * 3 2 1 5 5 H 1.48493 * 109.47085 * 30.00359 * 3 2 1 6 6 H 1.48506 * 109.46997 * 150.00028 * 3 2 1 7 7 C 1.38814 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99818 * 164.51427 * 7 2 1 9 9 N 1.36927 * 120.00076 * 344.51113 * 7 2 1 10 10 C 1.47319 * 118.66110 * 331.63554 * 9 7 2 11 11 C 1.53949 * 112.30142 * 222.10003 * 10 9 7 12 12 C 1.50884 * 109.99708 * 40.57624 * 11 10 9 13 13 C 1.52561 * 109.35691 * 268.17733 * 12 11 10 14 14 C 1.47097 * 114.32847 * 85.01261 * 13 12 11 15 15 C 1.44576 * 118.64538 * 151.66934 * 9 7 2 16 16 H 1.09000 * 109.45211 * 209.33944 * 15 9 7 17 17 C 1.53002 * 109.42351 * 329.27100 * 15 9 7 18 18 N 1.46501 * 109.47283 * 305.11814 * 17 15 9 19 19 C 1.34776 * 119.99839 * 180.02562 * 18 17 15 20 20 O 1.21564 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.47727 * 119.99845 * 179.97438 * 19 18 17 22 22 C 1.39650 * 120.11080 * 179.97438 * 21 19 18 23 23 C 1.37852 * 119.92544 * 179.97438 * 22 21 19 24 24 C 1.38603 * 120.14884 * 0.02637 * 23 22 21 25 25 F 1.35097 * 119.89236 * 179.97438 * 24 23 22 26 26 C 1.38838 * 120.22097 * 359.97438 * 24 23 22 27 27 F 1.35104 * 119.96401 * 180.02562 * 26 24 23 28 28 C 1.38061 * 120.07015 * 359.74355 * 26 24 23 29 29 H 0.97003 * 120.00217 * 359.97438 * 1 2 3 30 30 H 1.08998 * 108.80177 * 101.41300 * 10 9 7 31 31 H 1.08999 * 108.92692 * 342.87179 * 10 9 7 32 32 H 1.08999 * 109.37353 * 280.44525 * 11 10 9 33 33 H 1.09004 * 109.36802 * 160.70225 * 11 10 9 34 34 H 1.09000 * 109.48695 * 28.14326 * 12 11 10 35 35 H 1.08995 * 109.48952 * 148.18759 * 12 11 10 36 36 H 1.09004 * 108.51190 * 206.26733 * 13 12 11 37 37 H 1.09002 * 108.51961 * 323.91612 * 13 12 11 38 38 H 1.08997 * 109.32668 * 57.45399 * 14 13 12 39 39 H 1.09005 * 109.32959 * 176.93069 * 14 13 12 40 40 H 1.09001 * 109.47212 * 65.12607 * 17 15 9 41 41 H 1.09005 * 109.47116 * 185.11664 * 17 15 9 42 42 H 0.96995 * 119.99753 * 0.02562 * 18 17 15 43 43 H 1.07999 * 120.03884 * 359.95976 * 22 21 19 44 44 H 1.08001 * 119.92565 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.07556 * 180.26129 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2190 -0.2503 9 7 1.3629 -2.3666 0.3156 10 6 0.2036 -2.3067 1.2228 11 6 0.2092 -3.4498 2.2540 12 6 1.6114 -3.6805 2.7610 13 6 2.2912 -4.7427 1.9024 14 6 2.9176 -4.2221 0.6775 15 6 1.8456 -3.6046 -0.2540 16 1 1.0150 -4.3019 -0.3637 17 6 2.4622 -3.3269 -1.6265 18 7 1.4848 -2.6344 -2.4699 19 6 1.8094 -2.2867 -3.7310 20 8 2.9130 -2.5481 -4.1686 21 6 0.8236 -1.5890 -4.5817 22 6 1.1576 -1.2272 -5.8885 23 6 0.2346 -0.5767 -6.6792 24 6 -1.0240 -0.2805 -6.1800 25 9 -1.9244 0.3576 -6.9592 26 6 -1.3626 -0.6374 -4.8817 27 9 -2.5911 -0.3466 -4.4005 28 6 -0.4472 -1.2943 -4.0838 29 1 -0.4850 0.8401 0.0004 30 1 -0.7094 -2.3687 0.6306 31 1 0.2170 -1.3534 1.7511 32 1 -0.1602 -4.3617 1.7849 33 1 -0.4385 -3.1856 3.0900 34 1 2.1765 -2.7502 2.7037 35 1 1.5727 -4.0193 3.7962 36 1 3.0582 -5.2334 2.5017 37 1 1.5469 -5.4867 1.6184 38 1 3.6483 -3.4581 0.9427 39 1 3.4228 -5.0356 0.1568 40 1 3.3471 -2.7017 -1.5074 41 1 2.7440 -4.2695 -2.0957 42 1 0.6042 -2.4263 -2.1208 43 1 2.1380 -1.4565 -6.2792 44 1 0.4931 -0.2965 -7.6897 45 1 -0.7119 -1.5757 -3.0753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890877.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:41 Heat of formation + Delta-G solvation = -95.492801 kcal Electronic energy + Delta-G solvation = -30519.680907 eV Core-core repulsion = 26172.968638 eV Total energy + Delta-G solvation = -4346.712269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.61836 -49.69208 -41.22785 -39.85952 -38.90953 -36.05388 -35.23532 -33.52333 -32.49422 -32.01619 -31.59867 -28.62175 -27.30276 -25.24842 -25.11979 -24.28296 -23.28516 -21.66686 -21.08125 -20.78974 -19.61029 -18.63401 -18.32708 -17.88550 -17.46814 -17.38185 -17.20116 -16.46148 -16.26932 -16.10732 -15.98161 -15.70663 -15.60729 -15.33751 -15.21397 -14.90994 -14.56252 -14.33883 -14.10130 -13.70900 -13.56750 -13.37602 -13.25922 -13.03904 -12.86982 -12.81679 -12.68383 -12.54002 -12.37456 -12.01082 -11.53511 -11.38475 -11.31385 -11.18853 -11.15176 -10.85731 -10.34840 -10.28206 -10.01326 -9.73149 -8.53542 -7.79098 -5.21944 -0.59655 -0.12737 1.39896 1.46951 1.50061 1.61022 2.26774 2.53310 2.56261 2.60317 3.15042 3.36431 3.40311 3.58348 3.64237 3.87721 4.01769 4.06420 4.10264 4.29125 4.43725 4.49715 4.51974 4.58688 4.63681 4.68961 4.71710 4.82521 4.87843 5.02747 5.08502 5.10179 5.15084 5.26794 5.28899 5.40539 5.44286 5.53552 5.57051 5.63333 5.70019 5.77634 5.81055 5.91307 6.48160 6.65632 7.24630 7.28166 8.02265 8.40523 9.23736 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004074 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.134425 B = 6870.619480 C = 7431.913812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.023 4.023 3 Si 0.924 3.076 4 H -0.297 1.297 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.050 0.950 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.057 0.943 17 C 0.131 3.869 18 N -0.684 5.684 19 C 0.552 3.448 20 O -0.579 6.579 21 C -0.121 4.121 22 C -0.039 4.039 23 C -0.115 4.115 24 C 0.085 3.915 25 F -0.127 7.127 26 C 0.047 3.953 27 F -0.136 7.136 28 C -0.085 4.085 29 H 0.244 0.756 30 H 0.002 0.998 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.408 0.592 43 H 0.167 0.833 44 H 0.192 0.808 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -7.462 -6.961 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.220 4.220 3 Si 0.756 3.244 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.362 4.362 8 H 0.068 0.932 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.075 0.925 17 C 0.007 3.993 18 N -0.331 5.331 19 C 0.339 3.661 20 O -0.462 6.462 21 C -0.124 4.124 22 C -0.058 4.058 23 C -0.133 4.133 24 C 0.065 3.935 25 F -0.106 7.106 26 C 0.027 3.973 27 F -0.115 7.115 28 C -0.105 4.105 29 H 0.054 0.946 30 H 0.020 0.980 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.245 0.755 43 H 0.185 0.815 44 H 0.209 0.791 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.107 -7.514 -7.202 10.409 hybrid contribution -0.578 1.871 0.557 2.036 sum -0.685 -5.643 -6.645 8.745 Atomic orbital electron populations 1.70091 1.05320 1.24894 1.55774 1.25220 0.95532 0.99245 1.01988 0.85953 0.78603 0.82990 0.76896 1.22437 1.22427 1.20655 1.18944 0.91656 0.85603 1.40036 0.93216 1.43696 1.34178 1.01953 1.51132 1.20721 0.87617 0.95583 0.89645 1.21942 0.97204 0.99279 0.98718 1.20906 0.95946 0.98963 0.98308 1.20275 0.99858 0.97632 0.96034 1.21280 0.98488 0.99843 0.97201 1.20714 0.95028 0.88297 0.89653 0.92477 1.21550 0.91581 0.95521 0.90676 1.45732 1.18561 1.57122 1.11733 1.18214 0.86721 0.78900 0.82278 1.90699 1.23302 1.57595 1.74579 1.19943 0.93289 1.02845 0.96333 1.21406 1.00701 0.93012 0.90654 1.21345 0.89402 0.99368 1.03162 1.18048 0.89561 0.98342 0.87578 1.91530 1.66543 1.79099 1.73417 1.17642 0.82408 1.04460 0.92789 1.91521 1.39895 1.91744 1.88326 1.21273 0.92249 0.96774 1.00189 0.94589 0.97984 0.94478 0.92164 0.92274 0.93906 0.91996 0.91995 0.92039 0.93880 0.90688 0.93435 0.90878 0.75465 0.81546 0.79107 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.91 11.13 21.65 0.24 -47.66 16 2 C -0.02 -1.18 4.86 84.86 0.41 -0.77 16 3 Si 0.92 43.68 29.58 68.60 2.03 45.71 16 4 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.23 -11.10 7.61 84.04 0.64 -10.46 16 8 H 0.05 2.51 6.75 -2.91 -0.02 2.50 16 9 N -0.59 -24.33 1.77 -674.99 -1.19 -25.52 16 10 C 0.19 7.92 4.65 86.54 0.40 8.32 16 11 C -0.13 -4.30 5.72 30.23 0.17 -4.13 16 12 C -0.10 -3.15 5.51 29.76 0.16 -2.99 16 13 C -0.10 -2.68 5.16 28.61 0.15 -2.53 16 14 C -0.13 -3.78 5.06 29.39 0.15 -3.63 16 15 C 0.17 5.84 2.19 45.99 0.10 5.94 16 16 H 0.06 1.86 8.06 -2.39 -0.02 1.84 16 17 C 0.13 4.63 4.52 86.38 0.39 5.02 16 18 N -0.68 -25.21 4.66 -466.08 -2.17 -27.38 16 19 C 0.55 20.22 7.77 86.75 0.67 20.90 16 20 O -0.58 -23.42 16.34 -3.92 -0.06 -23.48 16 21 C -0.12 -3.78 5.87 -20.09 -0.12 -3.90 16 22 C -0.04 -0.95 9.59 22.52 0.22 -0.74 16 23 C -0.11 -2.34 10.01 22.27 0.22 -2.12 16 24 C 0.09 2.19 7.31 22.50 0.16 2.36 16 25 F -0.13 -3.28 17.17 44.97 0.77 -2.51 16 26 C 0.05 1.44 7.30 22.37 0.16 1.60 16 27 F -0.14 -4.55 17.18 44.97 0.77 -3.78 16 28 C -0.09 -2.72 9.51 22.56 0.21 -2.51 16 29 H 0.24 12.99 8.31 -92.71 -0.77 12.22 16 30 H 0.00 0.09 8.01 -2.39 -0.02 0.08 16 31 H 0.04 1.81 6.46 -2.39 -0.02 1.79 16 32 H 0.06 1.78 7.32 -2.39 -0.02 1.76 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.50 7.35 -2.39 -0.02 1.48 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.86 8.11 -2.38 -0.02 1.84 16 40 H 0.05 1.91 6.84 -2.39 -0.02 1.89 16 41 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.41 15.70 6.10 -92.71 -0.57 15.14 16 43 H 0.17 3.64 7.65 -2.91 -0.02 3.62 16 44 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.14 4.95 6.40 -2.91 -0.02 4.93 16 Total: -1.00 -57.41 365.39 4.96 -52.45 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.46 Total: 21.81 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.12 Total: 10.37 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -3.12 Total: -100.57 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 1.54 Total: -6.29 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -57.41 4.96 -52.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890877.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.044 kcal (2) G-P(sol) polarization free energy of solvation -57.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds