Wall clock time and date at job start Tue Mar 31 2020 21:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48498 * 109.46832 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46901 * 299.99722 * 3 2 1 6 6 H 1.48501 * 109.46902 * 59.99732 * 3 2 1 7 7 C 1.38819 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99894 * 194.60088 * 7 2 1 9 9 N 1.36936 * 119.99913 * 14.59869 * 7 2 1 10 10 C 1.47607 * 118.64190 * 27.76849 * 9 7 2 11 11 C 1.53944 * 112.14588 * 137.86175 * 10 9 7 12 12 C 1.50875 * 110.09304 * 319.43722 * 11 10 9 13 13 C 1.52563 * 109.35127 * 91.88566 * 12 11 10 14 14 C 1.47040 * 114.29620 * 274.93724 * 13 12 11 15 15 C 1.44571 * 118.64386 * 207.74068 * 9 7 2 16 16 H 1.09002 * 109.45290 * 150.70320 * 15 9 7 17 17 C 1.53006 * 109.44797 * 30.76062 * 15 9 7 18 18 N 1.46502 * 109.47253 * 54.94676 * 17 15 9 19 19 C 1.34774 * 120.00282 * 180.02562 * 18 17 15 20 20 O 1.21563 * 119.99645 * 359.97438 * 19 18 17 21 21 C 1.47728 * 119.99904 * 179.97438 * 19 18 17 22 22 C 1.39647 * 120.10909 * 0.02562 * 21 19 18 23 23 C 1.37848 * 119.92387 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.14756 * 0.02978 * 23 22 21 25 25 F 1.35103 * 119.89009 * 179.97438 * 24 23 22 26 26 C 1.38832 * 120.21723 * 359.66811 * 24 23 22 27 27 F 1.35104 * 119.96513 * 180.30258 * 26 24 23 28 28 C 1.38059 * 120.07274 * 0.61199 * 26 24 23 29 29 H 0.97003 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.09001 * 108.94904 * 258.54733 * 10 9 7 31 31 H 1.09000 * 108.94627 * 17.17303 * 10 9 7 32 32 H 1.08999 * 109.36798 * 79.62991 * 11 10 9 33 33 H 1.09002 * 109.36933 * 199.37168 * 11 10 9 34 34 H 1.09007 * 109.49420 * 211.85081 * 12 11 10 35 35 H 1.08997 * 109.49158 * 331.92208 * 12 11 10 36 36 H 1.09004 * 108.50779 * 36.23065 * 13 12 11 37 37 H 1.09005 * 108.51121 * 153.87036 * 13 12 11 38 38 H 1.08997 * 109.37553 * 302.59697 * 14 13 12 39 39 H 1.08997 * 109.28660 * 183.11273 * 14 13 12 40 40 H 1.09000 * 109.46997 * 294.94752 * 17 15 9 41 41 H 1.08995 * 109.47125 * 174.94741 * 17 15 9 42 42 H 0.97007 * 119.99361 * 359.97438 * 18 17 15 43 43 H 1.08002 * 120.04108 * 359.95760 * 22 21 19 44 44 H 1.08003 * 119.92739 * 179.97438 * 23 22 21 45 45 H 1.08004 * 120.07254 * 179.69506 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0640 -1.2173 0.2363 9 7 1.3586 -2.3691 -0.2978 10 6 0.1771 -2.3138 -1.1808 11 6 0.1660 -3.4604 -2.2080 12 6 1.5576 -3.6893 -2.7443 13 6 2.2580 -4.7475 -1.8975 14 6 2.9097 -4.2213 -0.6890 15 6 1.8567 -3.6043 0.2645 16 1 1.0305 -4.3034 0.3939 17 6 2.5025 -3.3219 1.6225 18 7 1.5416 -2.6311 2.4861 19 6 1.8930 -2.2790 3.7386 20 8 3.0071 -2.5351 4.1520 21 6 0.9241 -1.5819 4.6092 22 6 -0.3565 -1.2871 4.1367 23 6 -1.2577 -0.6370 4.9524 24 6 -0.8953 -0.2746 6.2404 25 9 -1.7825 0.3628 7.0352 26 6 0.3742 -0.5703 6.7184 27 9 0.7199 -0.2202 7.9766 28 6 1.2858 -1.2160 5.9072 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7240 -2.3766 -0.5707 31 1 0.1768 -1.3623 -1.7125 32 1 -0.1910 -4.3718 -1.7285 33 1 -0.4988 -3.2013 -3.0319 34 1 1.4975 -4.0315 -3.7775 35 1 2.1215 -2.7575 -2.7017 36 1 1.5221 -5.4937 -1.5979 37 1 3.0148 -5.2364 -2.5110 38 1 3.6324 -3.4560 -0.9719 39 1 3.4283 -5.0321 -0.1775 40 1 3.3824 -2.6939 1.4828 41 1 2.7976 -4.2627 2.0871 42 1 0.6527 -2.4265 2.1559 43 1 -0.6405 -1.5680 3.1332 44 1 -2.2480 -0.4086 4.5869 45 1 2.2750 -1.4416 6.2774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968890878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:49 Heat of formation + Delta-G solvation = -83.942349 kcal Electronic energy + Delta-G solvation = -30326.183213 eV Core-core repulsion = 25979.971810 eV Total energy + Delta-G solvation = -4346.211404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.50649 -48.57772 -39.88654 -38.45952 -37.58770 -34.62715 -33.57929 -32.04132 -31.02357 -30.81758 -30.31463 -27.09441 -25.76788 -23.89812 -23.51604 -23.09572 -22.03423 -20.27157 -19.72761 -19.26255 -18.33125 -17.46789 -17.09593 -16.48943 -16.34440 -15.80204 -15.59522 -15.21735 -14.99558 -14.71694 -14.49612 -14.47276 -14.10808 -14.06959 -13.68108 -13.62184 -13.12480 -12.91974 -12.84209 -12.57910 -12.19994 -12.02861 -11.94952 -11.52026 -11.32034 -11.29819 -11.15154 -10.91889 -10.64007 -10.25165 -10.09145 -10.04816 -9.78235 -9.70932 -9.62999 -9.45879 -9.15371 -8.80605 -8.50084 -8.31840 -6.79358 -5.91115 -3.35367 0.57553 0.98092 2.86627 3.30023 3.40060 3.42527 3.51790 3.76404 3.85902 4.30170 4.40670 4.54663 4.88778 4.93524 5.09203 5.12974 5.27734 5.37967 5.42543 5.58027 5.65606 5.73546 5.78000 5.85082 5.93648 6.00999 6.03254 6.08800 6.16001 6.24394 6.32993 6.50090 6.54818 6.59778 6.63384 6.64811 6.69696 6.78790 6.92340 7.02744 7.10741 7.33831 7.59515 7.75264 8.12029 8.34205 8.70511 9.12300 9.76390 10.21140 11.15354 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.003779 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.260790 B = 7407.999086 C = 8099.382814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.046 0.954 17 C 0.128 3.872 18 N -0.679 5.679 19 C 0.554 3.446 20 O -0.555 6.555 21 C -0.105 4.105 22 C -0.053 4.053 23 C -0.130 4.130 24 C 0.083 3.917 25 F -0.129 7.129 26 C 0.054 3.946 27 F -0.130 7.130 28 C -0.073 4.073 29 H 0.252 0.748 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.411 0.589 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 -6.027 4.175 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.307 5.307 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.328 5.328 19 C 0.339 3.661 20 O -0.436 6.436 21 C -0.108 4.108 22 C -0.072 4.072 23 C -0.149 4.149 24 C 0.063 3.937 25 F -0.107 7.107 26 C 0.033 3.967 27 F -0.108 7.108 28 C -0.092 4.092 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.249 0.751 43 H 0.171 0.829 44 H 0.169 0.831 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.270 -6.055 4.495 7.875 hybrid contribution -0.084 1.421 0.061 1.424 sum -2.355 -4.634 4.556 6.912 Atomic orbital electron populations 1.70013 1.04908 1.25325 1.54482 1.24887 0.95187 0.97859 1.00616 0.86415 0.79723 0.84613 0.77248 1.20374 1.21686 1.21792 1.19090 0.92117 0.84497 1.42151 0.91849 1.43752 1.32680 1.01684 1.52563 1.21014 0.88057 0.95599 0.89764 1.22070 0.96144 1.00469 0.99547 1.20949 0.97064 0.99822 0.96611 1.20279 0.98928 0.97928 0.96717 1.21362 0.99533 0.99791 0.97011 1.20524 0.94028 0.89492 0.89584 0.93637 1.21559 0.92791 0.95295 0.89991 1.45616 1.18307 1.57173 1.11749 1.17864 0.86633 0.79331 0.82250 1.90732 1.21444 1.56461 1.74929 1.20001 0.94967 1.01550 0.94302 1.21480 0.91434 0.94142 1.00134 1.21046 1.02143 1.00453 0.91262 1.17920 0.86634 0.98735 0.90457 1.91524 1.66895 1.79203 1.73117 1.17458 0.93240 1.04282 0.81676 1.91525 1.92337 1.90296 1.36666 1.21128 0.99923 0.95695 0.92483 0.93742 0.95801 0.90671 0.93804 0.93269 0.94207 0.90774 0.93497 0.94082 0.91768 0.93273 0.91057 0.92819 0.75078 0.82858 0.83065 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.01 11.03 55.49 0.61 -21.39 16 2 C 0.01 0.32 4.89 -17.43 -0.09 0.23 16 3 Si 0.89 20.47 29.58 -169.99 -5.03 15.44 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -5.72 7.65 -15.06 -0.12 -5.83 16 8 H 0.06 1.55 6.71 -52.49 -0.35 1.20 16 9 N -0.58 -11.70 1.78 -164.46 -0.29 -11.99 16 10 C 0.18 3.61 4.66 -2.94 -0.01 3.60 16 11 C -0.14 -2.37 5.71 -27.31 -0.16 -2.53 16 12 C -0.11 -1.70 5.51 -28.02 -0.15 -1.85 16 13 C -0.10 -1.48 5.15 -29.81 -0.15 -1.63 16 14 C -0.14 -2.13 5.06 -28.60 -0.14 -2.27 16 15 C 0.17 2.97 2.19 -67.97 -0.15 2.82 16 16 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 17 C 0.13 2.25 4.53 -4.04 -0.02 2.23 16 18 N -0.68 -12.04 4.67 -61.29 -0.29 -12.33 16 19 C 0.55 10.06 7.77 -12.38 -0.10 9.96 16 20 O -0.55 -11.47 16.34 5.31 0.09 -11.38 16 21 C -0.10 -1.65 5.87 -104.98 -0.62 -2.26 16 22 C -0.05 -0.75 9.53 -39.20 -0.37 -1.12 16 23 C -0.13 -1.66 10.01 -39.59 -0.40 -2.06 16 24 C 0.08 1.14 7.31 -39.22 -0.29 0.85 16 25 F -0.13 -1.79 17.18 2.25 0.04 -1.75 16 26 C 0.05 0.77 7.30 -39.43 -0.29 0.48 16 27 F -0.13 -1.88 17.18 2.25 0.04 -1.84 16 28 C -0.07 -1.07 9.57 -39.13 -0.37 -1.45 16 29 H 0.25 6.19 8.31 -40.82 -0.34 5.85 16 30 H 0.02 0.51 8.02 -51.93 -0.42 0.09 16 31 H 0.07 1.74 6.39 -51.93 -0.33 1.41 16 32 H 0.04 0.69 7.32 -51.93 -0.38 0.31 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 1.37 7.48 -51.93 -0.39 0.98 16 36 H 0.05 0.66 7.36 -51.93 -0.38 0.27 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 40 H 0.07 1.41 6.83 -51.93 -0.35 1.06 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.41 7.31 6.10 -40.82 -0.25 7.06 16 43 H 0.15 2.17 6.40 -52.49 -0.34 1.83 16 44 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 45 H 0.16 2.24 7.65 -52.48 -0.40 1.84 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -25.30 365.28 -8.85 -34.15 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.10 Total: 6.42 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.42 Total: -0.83 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.03 Total: -45.71 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.08 Total: -3.59 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -25.30 -8.85 -34.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.793 kcal (2) G-P(sol) polarization free energy of solvation -25.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds