Wall clock time and date at job start Tue Mar 31 2020 21:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00242 * 2 1 4 4 H 1.48498 * 109.46832 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46901 * 299.99722 * 3 2 1 6 6 H 1.48501 * 109.46902 * 59.99732 * 3 2 1 7 7 C 1.38819 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99894 * 194.60088 * 7 2 1 9 9 N 1.36936 * 119.99913 * 14.59869 * 7 2 1 10 10 C 1.47607 * 118.64190 * 27.76849 * 9 7 2 11 11 C 1.53944 * 112.14588 * 137.86175 * 10 9 7 12 12 C 1.50875 * 110.09304 * 319.43722 * 11 10 9 13 13 C 1.52563 * 109.35127 * 91.88566 * 12 11 10 14 14 C 1.47040 * 114.29620 * 274.93724 * 13 12 11 15 15 C 1.44571 * 118.64386 * 207.74068 * 9 7 2 16 16 H 1.09002 * 109.45290 * 150.70320 * 15 9 7 17 17 C 1.53006 * 109.44797 * 30.76062 * 15 9 7 18 18 N 1.46502 * 109.47253 * 54.94676 * 17 15 9 19 19 C 1.34774 * 120.00282 * 180.02562 * 18 17 15 20 20 O 1.21563 * 119.99645 * 359.97438 * 19 18 17 21 21 C 1.47728 * 119.99904 * 179.97438 * 19 18 17 22 22 C 1.39647 * 120.10909 * 0.02562 * 21 19 18 23 23 C 1.37848 * 119.92387 * 179.97438 * 22 21 19 24 24 C 1.38614 * 120.14756 * 0.02978 * 23 22 21 25 25 F 1.35103 * 119.89009 * 179.97438 * 24 23 22 26 26 C 1.38832 * 120.21723 * 359.66811 * 24 23 22 27 27 F 1.35104 * 119.96513 * 180.30258 * 26 24 23 28 28 C 1.38059 * 120.07274 * 0.61199 * 26 24 23 29 29 H 0.97003 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.09001 * 108.94904 * 258.54733 * 10 9 7 31 31 H 1.09000 * 108.94627 * 17.17303 * 10 9 7 32 32 H 1.08999 * 109.36798 * 79.62991 * 11 10 9 33 33 H 1.09002 * 109.36933 * 199.37168 * 11 10 9 34 34 H 1.09007 * 109.49420 * 211.85081 * 12 11 10 35 35 H 1.08997 * 109.49158 * 331.92208 * 12 11 10 36 36 H 1.09004 * 108.50779 * 36.23065 * 13 12 11 37 37 H 1.09005 * 108.51121 * 153.87036 * 13 12 11 38 38 H 1.08997 * 109.37553 * 302.59697 * 14 13 12 39 39 H 1.08997 * 109.28660 * 183.11273 * 14 13 12 40 40 H 1.09000 * 109.46997 * 294.94752 * 17 15 9 41 41 H 1.08995 * 109.47125 * 174.94741 * 17 15 9 42 42 H 0.97007 * 119.99361 * 359.97438 * 18 17 15 43 43 H 1.08002 * 120.04108 * 359.95760 * 22 21 19 44 44 H 1.08003 * 119.92739 * 179.97438 * 23 22 21 45 45 H 1.08004 * 120.07254 * 179.69506 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0640 -1.2173 0.2363 9 7 1.3586 -2.3691 -0.2978 10 6 0.1771 -2.3138 -1.1808 11 6 0.1660 -3.4604 -2.2080 12 6 1.5576 -3.6893 -2.7443 13 6 2.2580 -4.7475 -1.8975 14 6 2.9097 -4.2213 -0.6890 15 6 1.8567 -3.6043 0.2645 16 1 1.0305 -4.3034 0.3939 17 6 2.5025 -3.3219 1.6225 18 7 1.5416 -2.6311 2.4861 19 6 1.8930 -2.2790 3.7386 20 8 3.0071 -2.5351 4.1520 21 6 0.9241 -1.5819 4.6092 22 6 -0.3565 -1.2871 4.1367 23 6 -1.2577 -0.6370 4.9524 24 6 -0.8953 -0.2746 6.2404 25 9 -1.7825 0.3628 7.0352 26 6 0.3742 -0.5703 6.7184 27 9 0.7199 -0.2202 7.9766 28 6 1.2858 -1.2160 5.9072 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7240 -2.3766 -0.5707 31 1 0.1768 -1.3623 -1.7125 32 1 -0.1910 -4.3718 -1.7285 33 1 -0.4988 -3.2013 -3.0319 34 1 1.4975 -4.0315 -3.7775 35 1 2.1215 -2.7575 -2.7017 36 1 1.5221 -5.4937 -1.5979 37 1 3.0148 -5.2364 -2.5110 38 1 3.6324 -3.4560 -0.9719 39 1 3.4283 -5.0321 -0.1775 40 1 3.3824 -2.6939 1.4828 41 1 2.7976 -4.2627 2.0871 42 1 0.6527 -2.4265 2.1559 43 1 -0.6405 -1.5680 3.1332 44 1 -2.2480 -0.4086 4.5869 45 1 2.2750 -1.4416 6.2774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968890878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:47 Heat of formation + Delta-G solvation = -94.634750 kcal Electronic energy + Delta-G solvation = -30326.646871 eV Core-core repulsion = 25979.971810 eV Total energy + Delta-G solvation = -4346.675061 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.63718 -49.71071 -41.23639 -39.83411 -38.92225 -36.04687 -35.21229 -33.43391 -32.43497 -32.16904 -31.57047 -28.58983 -27.28442 -25.22694 -25.06759 -24.23801 -23.38700 -21.65753 -21.06437 -20.75408 -19.60119 -18.68609 -18.29827 -17.95735 -17.48000 -17.30913 -17.04352 -16.65458 -16.23143 -16.12102 -15.94639 -15.69991 -15.61485 -15.18364 -15.14970 -15.02227 -14.55229 -14.29481 -14.10934 -13.76961 -13.68374 -13.35433 -13.25142 -13.03236 -12.84738 -12.81302 -12.68267 -12.44830 -12.32675 -11.97652 -11.50327 -11.36561 -11.29348 -11.15939 -11.15155 -10.84424 -10.31204 -10.28377 -10.04019 -9.72792 -8.50952 -7.76038 -5.17896 -0.60809 -0.13982 1.40787 1.49593 1.52897 1.60155 2.20297 2.55056 2.55592 2.60997 3.16603 3.39147 3.43228 3.60703 3.66752 3.81013 3.93315 4.08522 4.12385 4.30583 4.44193 4.52197 4.55558 4.58576 4.66016 4.70997 4.72712 4.85753 4.91479 5.01883 5.05546 5.12128 5.18140 5.28923 5.31377 5.42861 5.46816 5.51879 5.59053 5.64401 5.73621 5.80166 5.84952 5.96998 6.51913 6.67858 7.26734 7.31744 8.05007 8.42930 9.26975 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013000 B = 0.003779 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.260790 B = 7407.999086 C = 8099.382814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.019 4.019 3 Si 0.920 3.080 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.300 1.300 7 C -0.230 4.230 8 H 0.047 0.953 9 N -0.588 5.588 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.129 4.129 15 C 0.173 3.827 16 H 0.062 0.938 17 C 0.130 3.870 18 N -0.678 5.678 19 C 0.551 3.449 20 O -0.586 6.586 21 C -0.119 4.119 22 C -0.049 4.049 23 C -0.117 4.117 24 C 0.087 3.913 25 F -0.127 7.127 26 C 0.051 3.949 27 F -0.131 7.131 28 C -0.073 4.073 29 H 0.246 0.754 30 H 0.009 0.991 31 H 0.039 0.961 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.412 0.588 43 H 0.154 0.846 44 H 0.180 0.820 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 -7.651 3.848 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.216 4.216 3 Si 0.752 3.248 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.228 1.228 7 C -0.361 4.361 8 H 0.064 0.936 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.170 4.170 15 C 0.065 3.935 16 H 0.080 0.920 17 C 0.006 3.994 18 N -0.326 5.326 19 C 0.338 3.662 20 O -0.469 6.469 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.136 4.136 24 C 0.067 3.933 25 F -0.106 7.106 26 C 0.031 3.969 27 F -0.110 7.110 28 C -0.092 4.092 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.250 0.750 43 H 0.172 0.828 44 H 0.197 0.803 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.210 -7.698 4.156 9.319 hybrid contribution 0.229 1.911 0.173 1.932 sum -2.982 -5.787 4.329 7.818 Atomic orbital electron populations 1.70065 1.04942 1.24814 1.55893 1.25118 0.95594 0.98767 1.02081 0.85948 0.78785 0.83675 0.76371 1.21095 1.22319 1.22787 1.18969 0.91350 0.85594 1.40198 0.93557 1.43781 1.32422 1.01835 1.52982 1.20801 0.87292 0.95529 0.89937 1.21950 0.97019 0.99460 0.98798 1.20912 0.96170 0.98889 0.98221 1.20263 0.99680 0.97688 0.96138 1.21284 0.98586 0.99766 0.97327 1.20686 0.94886 0.88422 0.89485 0.92040 1.21551 0.91889 0.95455 0.90506 1.45643 1.18239 1.57038 1.11720 1.18216 0.86635 0.78916 0.82423 1.90706 1.22821 1.57821 1.75528 1.19852 0.95280 1.02722 0.94419 1.21481 0.90956 0.94058 1.00277 1.21266 1.02932 0.98974 0.90405 1.17993 0.86301 0.98310 0.90722 1.91534 1.66757 1.79118 1.73150 1.17466 0.93489 1.04413 0.81572 1.91520 1.92414 1.90318 1.36756 1.21089 1.00099 0.95769 0.92278 0.94375 0.97297 0.94265 0.92053 0.92296 0.92140 0.93986 0.91874 0.92252 0.94057 0.90891 0.93729 0.91058 0.75034 0.82829 0.80261 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.81 11.03 21.65 0.24 -44.57 16 2 C -0.02 -0.92 4.89 84.86 0.41 -0.50 16 3 Si 0.92 42.67 29.58 68.60 2.03 44.70 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.23 -10.70 7.65 84.04 0.64 -10.06 16 8 H 0.05 2.32 6.71 -2.91 -0.02 2.30 16 9 N -0.59 -23.27 1.78 -674.24 -1.20 -24.47 16 10 C 0.19 7.47 4.66 86.49 0.40 7.87 16 11 C -0.13 -4.11 5.71 30.22 0.17 -3.93 16 12 C -0.10 -3.07 5.51 29.76 0.16 -2.91 16 13 C -0.10 -2.60 5.15 28.60 0.15 -2.45 16 14 C -0.13 -3.75 5.06 29.38 0.15 -3.60 16 15 C 0.17 5.68 2.19 45.99 0.10 5.78 16 16 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 17 C 0.13 4.51 4.53 86.38 0.39 4.90 16 18 N -0.68 -23.87 4.67 -466.08 -2.18 -26.05 16 19 C 0.55 20.09 7.77 86.75 0.67 20.76 16 20 O -0.59 -24.51 16.34 -3.91 -0.06 -24.57 16 21 C -0.12 -3.71 5.87 -20.09 -0.12 -3.83 16 22 C -0.05 -1.32 9.53 22.52 0.21 -1.11 16 23 C -0.12 -2.74 10.01 22.27 0.22 -2.52 16 24 C 0.09 2.24 7.31 22.50 0.16 2.40 16 25 F -0.13 -3.27 17.18 44.97 0.77 -2.50 16 26 C 0.05 1.40 7.30 22.37 0.16 1.56 16 27 F -0.13 -3.70 17.18 44.97 0.77 -2.93 16 28 C -0.07 -2.12 9.57 22.56 0.22 -1.91 16 29 H 0.25 12.20 8.31 -92.71 -0.77 11.43 16 30 H 0.01 0.38 8.02 -2.39 -0.02 0.36 16 31 H 0.04 1.83 6.39 -2.39 -0.02 1.81 16 32 H 0.06 1.70 7.32 -2.39 -0.02 1.68 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.04 1.51 7.48 -2.39 -0.02 1.49 16 36 H 0.06 1.48 7.36 -2.38 -0.02 1.46 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.80 8.11 -2.39 -0.02 1.78 16 40 H 0.04 1.79 6.83 -2.39 -0.02 1.77 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.41 14.45 6.10 -92.70 -0.57 13.88 16 43 H 0.15 4.18 6.40 -2.91 -0.02 4.16 16 44 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 45 H 0.16 4.51 7.65 -2.91 -0.02 4.49 16 Total: -1.00 -54.60 365.28 4.96 -49.64 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.46 Total: 20.27 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 4.12 Total: 10.47 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.13 Total: -95.09 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 1.54 Total: -5.42 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -54.60 4.96 -49.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968890878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.994 kcal (2) G-P(sol) polarization free energy of solvation -54.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds