Wall clock time and date at job start Tue Mar 31 2020 21:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48508 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00189 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00235 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 13 13 C 1.52998 * 109.47152 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47229 * 299.99860 * 13 12 10 15 15 H 1.09002 * 109.46839 * 299.99891 * 14 13 12 16 16 N 1.46500 * 109.47270 * 180.02562 * 14 13 12 17 17 C 1.34776 * 119.99910 * 155.00209 * 16 14 13 18 18 O 1.21282 * 120.00182 * 359.97438 * 17 16 14 19 19 C 1.50698 * 119.99921 * 179.97438 * 17 16 14 20 20 C 1.50702 * 109.47294 * 179.97438 * 19 17 16 21 21 C 1.38204 * 119.99915 * 100.00372 * 20 19 17 22 22 C 1.38427 * 119.99980 * 179.97438 * 21 20 19 23 23 F 1.35094 * 120.00104 * 179.97438 * 22 21 20 24 24 C 1.38471 * 120.00121 * 0.02562 * 22 21 20 25 25 C 1.38165 * 119.99706 * 359.95122 * 24 22 21 26 26 C 1.38427 * 120.00063 * 279.72565 * 20 19 17 27 27 F 1.35109 * 119.99916 * 0.02637 * 26 20 19 28 28 C 1.52999 * 109.47259 * 59.99879 * 14 13 12 29 29 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 32 32 H 1.08999 * 109.47405 * 299.99602 * 12 10 9 33 33 H 1.09002 * 109.47452 * 59.99785 * 12 10 9 34 34 H 1.08993 * 109.47492 * 60.00012 * 13 12 10 35 35 H 1.09002 * 109.47259 * 179.97438 * 13 12 10 36 36 H 0.96994 * 119.99891 * 334.99606 * 16 14 13 37 37 H 1.09002 * 109.47566 * 300.00477 * 19 17 16 38 38 H 1.09005 * 109.47090 * 60.00032 * 19 17 16 39 39 H 1.07998 * 120.00128 * 359.95256 * 21 20 19 40 40 H 1.07997 * 120.00451 * 179.97438 * 24 22 21 41 41 H 1.08006 * 120.00123 * 180.02562 * 25 24 22 42 42 H 1.08994 * 109.47028 * 59.99969 * 28 14 13 43 43 H 1.08999 * 109.47724 * 180.02562 * 28 14 13 44 44 H 1.08994 * 109.47567 * 299.99923 * 29 10 9 45 45 H 1.08991 * 109.47054 * 60.00626 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5536 0.5765 12 6 1.1807 -4.7552 0.5904 13 6 1.9459 -6.0801 0.5840 14 6 2.3103 -6.4517 -0.8548 15 1 1.3997 -6.5552 -1.4450 16 7 3.0424 -7.7207 -0.8610 17 6 3.0339 -8.4982 -1.9618 18 8 2.4197 -8.1477 -2.9471 19 6 3.7875 -9.8032 -1.9683 20 6 3.6176 -10.4747 -3.3067 21 6 4.6173 -10.3850 -4.2567 22 6 4.4615 -11.0023 -5.4859 23 9 5.4386 -10.9141 -6.4147 24 6 3.3038 -11.7092 -5.7639 25 6 2.3045 -11.7993 -4.8140 26 6 2.4626 -11.1863 -3.5825 27 9 1.4874 -11.2782 -2.6519 28 6 3.1875 -5.3533 -1.4587 29 6 2.4217 -4.0280 -1.4525 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0068 32 1 0.9216 -4.4908 1.6156 33 1 0.2700 -4.8584 0.0004 34 1 2.8564 -5.9768 1.1742 35 1 1.3211 -6.8627 1.0146 36 1 3.5333 -8.0011 -0.0728 37 1 4.8456 -9.6128 -1.7886 38 1 3.3969 -10.4523 -1.1844 39 1 5.5200 -9.8330 -4.0402 40 1 3.1820 -12.1904 -6.7230 41 1 1.4016 -12.3510 -5.0306 42 1 4.0980 -5.2498 -0.8685 43 1 3.4467 -5.6177 -2.4839 44 1 1.5111 -4.1311 -2.0425 45 1 3.0467 -3.2455 -1.8827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034720209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:09 Heat of formation + Delta-G solvation = -108.631428 kcal Electronic energy + Delta-G solvation = -28504.321858 eV Core-core repulsion = 24157.039856 eV Total energy + Delta-G solvation = -4347.282002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.27619 -49.24201 -40.30352 -39.11092 -37.88275 -34.87997 -33.51060 -32.95502 -30.79521 -30.48985 -30.39762 -28.52792 -26.92395 -23.77679 -23.41276 -22.64854 -22.30683 -21.08159 -20.47512 -19.46206 -18.07749 -17.62951 -17.60574 -17.36652 -16.91556 -16.23310 -16.08583 -15.63101 -15.30717 -15.09343 -14.77087 -14.66277 -14.23044 -14.01200 -13.80865 -13.70792 -13.55115 -13.45138 -13.13826 -12.96481 -12.55826 -12.30557 -12.18793 -12.00445 -11.81193 -11.50483 -11.40730 -11.04043 -10.82845 -10.76619 -10.67191 -10.16313 -10.10926 -10.04418 -9.75506 -9.61955 -9.48453 -9.00098 -8.89149 -8.84645 -6.93059 -5.74719 -3.03086 0.53817 0.60773 2.50266 2.80606 3.19707 3.44097 3.49597 3.51901 3.72849 3.80512 4.01390 4.19115 4.51503 4.59208 4.63861 4.68193 4.85140 4.91866 4.98248 5.05112 5.26156 5.29264 5.50979 5.52633 5.57431 5.60766 5.63157 5.68086 5.69372 5.73406 5.85068 5.87602 6.02611 6.23943 6.26161 6.30146 6.36935 6.47716 6.57069 6.64998 6.72940 6.99521 7.15883 7.39509 7.72255 8.11402 8.44161 9.55139 10.13924 10.48388 11.48141 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.002029 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.949334 B =13797.487088 C =14463.004995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.145 3.855 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.514 3.486 18 O -0.529 6.529 19 C -0.105 4.105 20 C -0.070 4.070 21 C -0.115 4.115 22 C 0.090 3.910 23 F -0.135 7.135 24 C -0.125 4.125 25 C -0.124 4.124 26 C 0.108 3.892 27 F -0.131 7.131 28 C -0.123 4.123 29 C -0.132 4.132 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.173 -28.868 -4.913 30.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.160 4.160 13 C -0.157 4.157 14 C 0.042 3.958 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.299 3.701 18 O -0.405 6.405 19 C -0.145 4.145 20 C -0.072 4.072 21 C -0.133 4.133 22 C 0.070 3.930 23 F -0.114 7.114 24 C -0.144 4.144 25 C -0.143 4.143 26 C 0.088 3.912 27 F -0.109 7.109 28 C -0.162 4.162 29 C -0.173 4.173 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.838 -28.447 -5.609 30.312 hybrid contribution 0.395 0.872 0.260 0.992 sum 9.233 -27.575 -5.349 29.567 Atomic orbital electron populations 1.69672 1.05091 1.25470 1.57935 1.24746 0.95515 0.97674 1.03209 0.86141 0.78772 0.84275 0.77164 1.20597 1.21909 1.21925 1.19284 0.90981 0.84150 1.42282 0.91188 1.42443 1.05806 0.99824 1.88536 1.20237 0.94274 0.85973 0.92770 0.93615 1.21753 0.98957 0.93455 1.01793 1.21745 1.00826 0.98308 0.94803 1.21126 0.95476 0.81701 0.97542 0.89471 1.46128 1.53469 1.22091 1.15812 1.20295 0.81318 0.85150 0.83368 1.90758 1.43029 1.73393 1.33297 1.20650 1.03197 0.95233 0.95448 1.19123 0.93293 0.98291 0.96463 1.20869 1.00399 1.00349 0.91724 1.17580 0.87175 1.00861 0.87339 1.91524 1.60807 1.94719 1.64339 1.20993 0.92283 1.00266 1.00855 1.20969 1.00501 1.01102 0.91685 1.17464 0.86259 0.99838 0.87603 1.91523 1.60740 1.94491 1.64181 1.21900 0.98559 0.95386 1.00385 1.22236 0.99767 0.94496 1.00825 0.93604 0.78307 0.91349 0.91971 0.91562 0.91876 0.76825 0.87054 0.87207 0.83702 0.83683 0.83568 0.92320 0.92437 0.92505 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.16 5.12 -53.42 -0.27 -18.44 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 12 C -0.12 -1.91 5.39 -26.73 -0.14 -2.06 16 13 C -0.12 -1.42 5.39 -26.73 -0.14 -1.57 16 14 C 0.15 1.88 2.45 -67.93 -0.17 1.71 16 15 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 16 N -0.72 -7.23 5.08 -53.81 -0.27 -7.50 16 17 C 0.51 5.84 7.78 -10.99 -0.09 5.75 16 18 O -0.53 -8.49 15.62 5.56 0.09 -8.41 16 19 C -0.11 -0.78 5.56 -29.03 -0.16 -0.94 16 20 C -0.07 -0.64 4.42 -104.56 -0.46 -1.10 16 21 C -0.11 -0.97 9.65 -39.52 -0.38 -1.35 16 22 C 0.09 0.79 7.30 -39.43 -0.29 0.50 16 23 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 24 C -0.13 -0.94 10.02 -39.52 -0.40 -1.33 16 25 C -0.12 -0.98 10.02 -39.52 -0.40 -1.37 16 26 C 0.11 1.05 7.14 -39.43 -0.28 0.77 16 27 F -0.13 -1.41 16.65 2.25 0.04 -1.38 16 28 C -0.12 -1.80 5.50 -26.70 -0.15 -1.95 16 29 C -0.13 -2.41 5.51 -26.69 -0.15 -2.56 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 37 H 0.11 0.50 8.01 -51.93 -0.42 0.08 16 38 H 0.11 0.61 7.94 -51.93 -0.41 0.20 16 39 H 0.15 0.96 8.04 -52.49 -0.42 0.54 16 40 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -33.98 381.43 -9.07 -43.05 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.51 Total: 7.80 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.63 Total: -9.48 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.18 Total: -53.60 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.08 Total: -2.61 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.98 -9.07 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034720209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.580 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds