Wall clock time and date at job start Tue Mar 31 2020 21:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46983 * 300.00099 * 3 2 1 6 6 H 1.48495 * 109.47328 * 60.00288 * 3 2 1 7 7 C 1.38813 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 12 12 C 1.53002 * 109.46958 * 85.00133 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46500 * 109.47249 * 180.02562 * 14 13 12 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 14 13 18 18 O 1.21283 * 120.00026 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99922 * 180.02562 * 17 16 14 20 20 C 1.50705 * 109.47119 * 179.97438 * 19 17 16 21 21 C 1.38254 * 120.00650 * 264.72891 * 20 19 17 22 22 C 1.38211 * 120.07187 * 179.71935 * 21 20 19 23 23 C 1.38258 * 120.07299 * 0.55349 * 22 21 20 24 24 C 1.38369 * 119.99604 * 359.72413 * 23 22 21 25 25 F 1.35097 * 120.03582 * 180.02562 * 24 23 22 26 26 C 1.38377 * 119.99590 * 85.00026 * 20 19 17 27 27 F 1.35097 * 120.03476 * 0.02562 * 26 20 19 28 28 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 29 29 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 30 30 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 33 33 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 34 34 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 35 35 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 36 36 H 0.97005 * 119.99374 * 264.99912 * 16 14 13 37 37 H 1.08991 * 109.47241 * 299.99575 * 19 17 16 38 38 H 1.09000 * 109.47273 * 60.00364 * 19 17 16 39 39 H 1.08004 * 119.95586 * 359.97438 * 21 20 19 40 40 H 1.07999 * 119.96346 * 180.25200 * 22 21 20 41 41 H 1.07993 * 120.00003 * 179.69948 * 23 22 21 42 42 H 1.09002 * 109.47153 * 180.02562 * 28 14 13 43 43 H 1.09001 * 109.46832 * 60.00321 * 28 14 13 44 44 H 1.09004 * 109.47368 * 60.00227 * 29 10 9 45 45 H 1.09001 * 109.47372 * 300.00383 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 1 2.9687 -3.5500 -0.5920 12 6 2.4219 -4.0369 1.4340 13 6 3.1875 -5.3615 1.4327 14 6 2.3108 -6.4567 0.8219 15 1 1.4002 -6.5639 1.4112 16 7 3.0436 -7.7252 0.8213 17 6 3.0346 -8.5092 1.9174 18 8 2.4202 -8.1644 2.9046 19 6 3.7890 -9.8139 1.9169 20 6 3.6194 -10.4928 3.2516 21 6 4.5741 -10.3272 4.2378 22 6 4.4170 -10.9444 5.4644 23 6 3.3106 -11.7381 5.7040 24 6 2.3561 -11.9105 4.7171 25 9 1.2744 -12.6854 4.9505 26 6 2.5108 -11.2864 3.4882 27 9 1.5805 -11.4536 2.5230 28 6 1.9469 -6.0766 -0.6147 29 6 1.1809 -4.7516 -0.6133 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0023 32 1 3.0469 -3.2569 1.8690 33 1 1.5112 -4.1436 2.0233 34 1 4.0982 -5.2543 0.8435 35 1 3.4471 -5.6321 2.4562 36 1 3.5354 -8.0008 0.0318 37 1 3.3995 -10.4584 1.1290 38 1 4.8471 -9.6217 1.7393 39 1 5.4415 -9.7114 4.0508 40 1 5.1618 -10.8106 6.2349 41 1 3.1915 -12.2238 6.6611 42 1 1.3220 -6.8566 -1.0498 43 1 2.8577 -5.9694 -1.2040 44 1 0.9216 -4.4808 -1.6368 45 1 0.2702 -4.8583 -0.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034745841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:00 Heat of formation + Delta-G solvation = -107.481263 kcal Electronic energy + Delta-G solvation = -28574.978965 eV Core-core repulsion = 24227.746838 eV Total energy + Delta-G solvation = -4347.232128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.74605 -48.82715 -40.32601 -39.16670 -37.88741 -34.87949 -33.41628 -32.91368 -30.69796 -30.67644 -30.40628 -28.56041 -26.92644 -23.74343 -23.21214 -22.81725 -22.32536 -21.09602 -20.47925 -19.46248 -18.24208 -17.66667 -17.45459 -17.26607 -16.93585 -16.43303 -16.20829 -15.32655 -15.23994 -15.20276 -15.05065 -14.69182 -14.24945 -14.03798 -13.84482 -13.70100 -13.56088 -13.39189 -13.07630 -12.62476 -12.54145 -12.37977 -12.16480 -11.99907 -11.81442 -11.65323 -11.42736 -11.04155 -10.83096 -10.76692 -10.67393 -10.16329 -10.11039 -10.02379 -9.75591 -9.59868 -9.27483 -9.08209 -9.00031 -8.84812 -6.93174 -5.74803 -3.03283 0.55480 0.58305 2.50092 2.82105 3.21250 3.42688 3.43843 3.49236 3.51634 3.93358 4.06596 4.27018 4.49884 4.58975 4.63537 4.65961 4.85907 4.91847 4.96201 5.05109 5.27280 5.33731 5.42308 5.52373 5.55527 5.60878 5.67841 5.68378 5.73338 5.83137 5.85054 5.87501 6.02306 6.23925 6.26062 6.30044 6.36195 6.47316 6.57085 6.64877 6.72677 6.99243 7.15685 7.39440 7.71996 8.11340 8.44038 9.54954 10.13804 10.48228 11.48048 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.001978 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.299194 B =14155.667430 C =14420.397126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.122 4.122 14 C 0.145 3.855 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.513 3.487 18 O -0.529 6.529 19 C -0.106 4.106 20 C -0.071 4.071 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.127 4.127 24 C 0.067 3.933 25 F -0.129 7.129 26 C 0.082 3.918 27 F -0.126 7.126 28 C -0.118 4.118 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.398 0.602 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.573 -27.792 5.625 30.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.041 3.959 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.299 3.701 18 O -0.405 6.405 19 C -0.145 4.145 20 C -0.072 4.072 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.146 4.146 24 C 0.047 3.953 25 F -0.108 7.108 26 C 0.062 3.938 27 F -0.104 7.104 28 C -0.157 4.157 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.152 -27.415 6.290 30.258 hybrid contribution -0.048 0.670 -0.426 0.795 sum 11.103 -26.745 5.865 29.546 Atomic orbital electron populations 1.69671 1.05090 1.25480 1.57923 1.24748 0.95515 0.97679 1.03211 0.86138 0.78758 0.84275 0.77164 1.20601 1.21930 1.21912 1.19282 0.90978 0.84147 1.42294 0.91184 1.42446 1.05811 0.99817 1.88543 1.20235 0.94270 0.85976 0.92765 0.93619 1.22225 0.99776 0.94491 1.00841 1.21887 0.98549 0.95391 1.00349 1.21129 0.95484 0.81712 0.97553 0.89488 1.46132 1.53406 1.21962 1.15999 1.20303 0.81345 0.85103 0.83391 1.90760 1.43009 1.73646 1.33082 1.20650 1.03186 0.95160 0.95554 1.19241 0.93713 0.97250 0.97041 1.21006 0.98786 0.98654 0.92236 1.21051 0.97302 0.96050 0.97277 1.21105 0.93799 1.00779 0.98924 1.17648 0.87191 0.96449 0.94011 1.91533 1.52247 1.72303 1.94714 1.17470 0.89272 1.01104 0.85960 1.91523 1.63637 1.94027 1.61233 1.21755 1.00821 0.98294 0.94823 1.21766 0.98956 0.93462 1.01788 0.93598 0.78303 0.91818 0.92509 0.92325 0.92431 0.76818 0.87380 0.86866 0.84222 0.84063 0.83698 0.91883 0.91544 0.91347 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.15 5.12 -53.43 -0.27 -18.43 16 10 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 14 C 0.14 1.87 2.45 -67.93 -0.17 1.71 16 15 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 16 N -0.72 -7.24 5.08 -53.81 -0.27 -7.51 16 17 C 0.51 5.85 7.79 -10.99 -0.09 5.76 16 18 O -0.53 -8.54 15.70 5.55 0.09 -8.45 16 19 C -0.11 -0.78 5.61 -29.03 -0.16 -0.94 16 20 C -0.07 -0.65 4.38 -104.56 -0.46 -1.10 16 21 C -0.09 -0.63 9.68 -39.59 -0.38 -1.02 16 22 C -0.10 -0.62 10.04 -39.58 -0.40 -1.02 16 23 C -0.13 -0.95 10.02 -39.53 -0.40 -1.35 16 24 C 0.07 0.69 7.31 -39.37 -0.29 0.41 16 25 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 26 C 0.08 0.91 7.25 -39.36 -0.29 0.62 16 27 F -0.13 -1.56 16.48 2.25 0.04 -1.53 16 28 C -0.12 -1.43 5.39 -26.71 -0.14 -1.58 16 29 C -0.12 -1.92 5.39 -26.71 -0.14 -2.07 16 30 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.38 10.24 7.80 -40.82 -0.32 9.93 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 2.63 8.60 -40.82 -0.35 2.28 16 37 H 0.11 0.65 7.79 -51.93 -0.40 0.24 16 38 H 0.11 0.47 8.05 -51.93 -0.42 0.05 16 39 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -34.53 381.34 -9.08 -43.61 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.50 Total: 7.23 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -3.64 Total: -9.02 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.18 Total: -53.59 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.53 -9.08 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034745841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.875 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds