Wall clock time and date at job start Tue Mar 31 2020 21:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 120.00352 * 2 1 4 4 H 1.48495 * 109.46704 * 239.99722 * 3 2 1 5 5 H 1.48496 * 109.46704 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47203 * 119.99759 * 3 2 1 7 7 C 1.38815 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99879 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.57347 * 324.83439 * 10 9 7 12 12 C 1.53803 * 109.52175 * 204.68173 * 10 9 7 13 13 C 1.52452 * 109.42407 * 162.21764 * 12 10 9 14 14 C 1.53972 * 110.72997 * 113.72811 * 13 12 10 15 15 C 1.52876 * 109.71601 * 315.65216 * 14 13 12 16 16 C 1.53052 * 109.24376 * 287.11874 * 15 14 13 17 17 N 1.45341 * 108.62256 * 77.98043 * 16 15 14 18 18 C 1.34783 * 120.34972 * 223.25484 * 17 16 15 19 19 O 1.21581 * 119.99575 * 184.00804 * 18 17 16 20 20 C 1.47568 * 120.00060 * 4.00793 * 18 17 16 21 21 C 1.39735 * 120.13872 * 308.48974 * 20 18 17 22 22 C 1.37739 * 119.90270 * 179.97438 * 21 20 18 23 23 C 1.38757 * 120.19150 * 359.97438 * 22 21 20 24 24 F 1.35096 * 119.86006 * 180.02562 * 23 22 21 25 25 C 1.38494 * 120.28612 * 0.05379 * 23 22 21 26 26 C 1.38197 * 120.09121 * 359.97438 * 25 23 22 27 27 F 1.35106 * 120.09390 * 179.97438 * 26 25 23 28 28 C 1.46955 * 119.29317 * 42.97763 * 17 16 15 29 29 H 0.97007 * 119.99261 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00067 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.48134 * 282.20418 * 12 10 9 32 32 H 1.09002 * 109.47897 * 42.23312 * 12 10 9 33 33 H 1.08994 * 109.22375 * 234.05228 * 13 12 10 34 34 H 1.09001 * 109.21958 * 353.45267 * 13 12 10 35 35 H 1.09008 * 109.42684 * 75.72962 * 14 13 12 36 36 H 1.08996 * 109.42787 * 195.62418 * 14 13 12 37 37 H 1.09001 * 109.48407 * 47.09185 * 15 14 13 38 38 H 1.08999 * 109.47802 * 167.11183 * 15 14 13 39 39 H 1.08999 * 109.64569 * 318.13700 * 16 15 14 40 40 H 1.08994 * 109.49328 * 197.72799 * 16 15 14 41 41 H 1.07996 * 120.05244 * 0.26001 * 21 20 18 42 42 H 1.08005 * 119.90687 * 180.02562 * 22 21 20 43 43 H 1.08005 * 119.95517 * 179.97438 * 25 23 22 44 44 H 1.09001 * 109.53591 * 8.53653 * 28 17 16 45 45 H 1.09005 * 109.53168 * 128.69229 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9681 -3.5535 -0.5892 12 6 1.1746 -4.7607 -0.6038 13 6 2.0475 -5.9427 -1.0101 14 6 1.7304 -7.1769 -0.1459 15 6 1.6118 -6.7627 1.3209 16 6 3.0052 -6.4485 1.8707 17 7 3.4003 -5.1289 1.4072 18 6 4.6510 -4.9125 0.9539 19 8 4.9969 -3.7911 0.6363 20 6 5.6004 -6.0368 0.8430 21 6 5.8184 -6.8813 1.9347 22 6 6.7053 -7.9295 1.8257 23 6 7.3825 -8.1496 0.6348 24 9 8.2505 -9.1800 0.5352 25 6 7.1729 -7.3171 -0.4520 26 6 6.2862 -6.2616 -0.3554 27 9 6.0821 -5.4491 -1.4154 28 6 2.4198 -4.0346 1.4324 29 1 -0.4849 0.8402 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 0.4424 -5.0866 0.1350 32 1 0.6576 -4.3722 -1.4813 33 1 1.8638 -6.1812 -2.0576 34 1 3.0963 -5.6751 -0.8815 35 1 0.7897 -7.6182 -0.4754 36 1 2.5310 -7.9089 -0.2516 37 1 0.9807 -5.8774 1.3988 38 1 1.1680 -7.5769 1.8938 39 1 3.7169 -7.1920 1.5118 40 1 2.9778 -6.4619 2.9602 41 1 5.2888 -6.7152 2.8612 42 1 6.8735 -8.5825 2.6694 43 1 7.7033 -7.4931 -1.3763 44 1 1.5239 -4.3600 1.9612 45 1 2.8499 -3.1715 1.9408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088420149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:40 Heat of formation + Delta-G solvation = -72.426161 kcal Electronic energy + Delta-G solvation = -30870.741714 eV Core-core repulsion = 26525.029690 eV Total energy + Delta-G solvation = -4345.712024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.42255 -49.15661 -40.69425 -38.74421 -37.36545 -35.03592 -33.92459 -32.17306 -31.49128 -30.92387 -29.67025 -27.44855 -26.27656 -24.48150 -23.65802 -23.20790 -22.54079 -20.92513 -20.00337 -19.24008 -18.40352 -17.67025 -17.33622 -16.98925 -16.39906 -16.08875 -15.84494 -15.78025 -15.44622 -15.31599 -14.79110 -14.52305 -14.39351 -14.09244 -13.92732 -13.66400 -13.36806 -13.06977 -12.78239 -12.76112 -12.53951 -12.37352 -12.21122 -11.84336 -11.70661 -11.51711 -11.06867 -10.93943 -10.77937 -10.70855 -10.46344 -10.25429 -10.11263 -9.92776 -9.63230 -9.54655 -9.42571 -9.06426 -8.96821 -8.28454 -6.90152 -5.69842 -2.98354 0.33394 0.60419 2.58881 2.93887 3.24417 3.46057 3.52544 3.55129 3.58926 3.98093 4.16608 4.29874 4.42818 4.62582 4.70031 4.74327 4.92000 5.01552 5.25121 5.26870 5.32055 5.34354 5.38199 5.47972 5.54901 5.60435 5.63526 5.64691 5.74089 5.78931 5.83978 5.95397 6.04499 6.11264 6.16632 6.28790 6.37244 6.44504 6.48887 6.66764 6.69927 6.87821 7.16765 7.57906 7.87603 8.31176 8.49576 9.60949 10.15106 10.50728 11.52664 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015105 B = 0.003626 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.194639 B = 7719.488355 C = 8638.106590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.233 4.233 8 H 0.074 0.926 9 N -0.718 5.718 10 C 0.164 3.836 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.151 4.151 16 C 0.099 3.901 17 N -0.593 5.593 18 C 0.551 3.449 19 O -0.506 6.506 20 C -0.165 4.165 21 C -0.034 4.034 22 C -0.170 4.170 23 C 0.145 3.855 24 F -0.129 7.129 25 C -0.198 4.198 26 C 0.179 3.821 27 F -0.111 7.111 28 C 0.099 3.901 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.076 0.924 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 -23.256 4.435 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.365 4.365 8 H 0.092 0.908 9 N -0.359 5.359 10 C 0.053 3.947 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.189 4.189 16 C -0.024 4.024 17 N -0.327 5.327 18 C 0.337 3.663 19 O -0.380 6.380 20 C -0.170 4.170 21 C -0.053 4.053 22 C -0.189 4.189 23 C 0.125 3.875 24 F -0.107 7.107 25 C -0.218 4.218 26 C 0.158 3.842 27 F -0.089 7.089 28 C -0.025 4.025 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.172 0.828 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.900 -22.460 4.201 24.902 hybrid contribution 0.303 0.757 -0.163 0.831 sum 10.203 -21.704 4.038 24.320 Atomic orbital electron populations 1.69660 1.05061 1.25643 1.58189 1.24721 0.95474 0.97621 1.03116 0.86275 0.78492 0.83504 0.78026 1.21249 1.21826 1.21261 1.19317 0.91311 0.83860 1.41974 0.90784 1.42377 1.05654 0.99694 1.88126 1.20691 0.95152 0.86083 0.92732 0.92180 1.22089 0.98362 0.95228 1.01103 1.21666 1.00569 0.94711 0.98536 1.21726 1.01087 0.97563 0.94726 1.22275 0.97018 1.03038 0.96543 1.21741 0.97258 0.84938 0.98491 1.47861 1.10933 1.11185 1.62690 1.17841 0.81766 0.87723 0.78954 1.90920 1.76619 1.22962 1.47521 1.20258 1.02267 0.99921 0.94517 1.21097 0.95140 0.91268 0.97770 1.21113 0.99325 1.00913 0.97507 1.17447 0.90052 0.85827 0.94169 1.91547 1.66777 1.55778 1.96627 1.20994 1.02909 0.96871 1.00998 1.17227 0.94582 0.88767 0.83622 1.91637 1.93119 1.70522 1.53665 1.22714 0.90136 0.87842 1.01814 0.93609 0.78280 0.91789 0.91715 0.92797 0.92237 0.92141 0.92581 0.89042 0.91154 0.90035 0.91809 0.83241 0.83396 0.82818 0.90600 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 23.41 29.55 -169.99 -5.02 18.39 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -6.73 9.90 -15.06 -0.15 -6.88 16 8 H 0.07 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.72 -18.22 5.12 -53.35 -0.27 -18.49 16 10 C 0.16 3.36 2.40 -67.85 -0.16 3.20 16 11 H 0.06 1.42 6.28 -51.93 -0.33 1.09 16 12 C -0.13 -2.15 4.97 -26.59 -0.13 -2.28 16 13 C -0.12 -1.62 5.40 -26.50 -0.14 -1.77 16 14 C -0.11 -1.19 5.75 -26.29 -0.15 -1.34 16 15 C -0.15 -1.49 5.45 -26.77 -0.15 -1.63 16 16 C 0.10 0.98 4.68 -4.64 -0.02 0.96 16 17 N -0.59 -8.47 1.69 -175.82 -0.30 -8.77 16 18 C 0.55 8.94 5.36 -12.45 -0.07 8.88 16 19 O -0.51 -10.83 15.67 5.29 0.08 -10.75 16 20 C -0.17 -2.05 4.87 -104.91 -0.51 -2.56 16 21 C -0.03 -0.29 7.51 -39.20 -0.29 -0.59 16 22 C -0.17 -1.22 10.01 -39.57 -0.40 -1.61 16 23 C 0.14 1.23 7.30 -39.30 -0.29 0.95 16 24 F -0.13 -1.12 17.26 2.25 0.04 -1.08 16 25 C -0.20 -1.90 9.99 -39.50 -0.39 -2.29 16 26 C 0.18 2.23 7.26 -38.98 -0.28 1.95 16 27 F -0.11 -1.71 16.58 2.25 0.04 -1.67 16 28 C 0.10 1.75 4.75 -4.13 -0.02 1.73 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 31 H 0.06 0.96 5.47 -51.93 -0.28 0.68 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.93 5.38 -51.93 -0.28 0.65 16 35 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.09 1.07 3.35 -51.93 -0.17 0.90 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.69 4.81 -51.93 -0.25 0.44 16 40 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 41 H 0.15 0.97 7.13 -52.49 -0.37 0.60 16 42 H 0.15 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.08 1.20 6.07 -51.93 -0.32 0.88 16 45 H 0.08 1.67 8.02 -51.93 -0.42 1.25 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.57 356.46 -8.24 -41.82 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.65 Total: 6.87 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.25 Total: -3.80 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.15 Total: -55.14 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.08 Total: -2.75 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.57 -8.24 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088420149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.611 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds