Wall clock time and date at job start Tue Mar 31 2020 20:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00141 * 2 1 4 4 H 1.09005 * 109.46721 * 29.99893 * 3 2 1 5 5 C 1.53004 * 109.47147 * 149.99705 * 3 2 1 6 6 N 1.46895 * 109.47035 * 300.00445 * 5 3 2 7 7 C 1.46906 * 110.99789 * 179.97438 * 6 5 3 8 8 C 1.53002 * 109.47053 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47237 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00447 * 180.02562 * 9 8 7 11 11 O 1.21272 * 119.99366 * 0.02562 * 10 9 8 12 12 C 1.50696 * 119.99877 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.46686 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99878 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99971 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99862 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99970 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46892 * 60.00083 * 18 16 14 20 20 H 1.48492 * 109.46927 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47242 * 300.00126 * 18 16 14 22 22 C 1.50692 * 109.47282 * 270.00224 * 3 2 1 23 23 C 1.38232 * 120.00243 * 324.72357 * 22 3 2 24 24 C 1.38230 * 120.00538 * 179.79300 * 23 22 3 25 25 C 1.38240 * 119.99726 * 0.43933 * 24 23 22 26 26 C 1.38237 * 119.99883 * 359.81293 * 25 24 23 27 27 C 1.38235 * 119.99918 * 359.97438 * 26 25 24 28 28 H 1.08993 * 109.47515 * 299.99735 * 1 2 3 29 29 H 1.08998 * 109.47018 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46863 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.46661 * 60.00464 * 5 3 2 33 33 H 1.00902 * 111.00273 * 303.95364 * 6 5 3 34 34 H 1.08992 * 109.47459 * 299.99826 * 7 6 5 35 35 H 1.09004 * 109.47040 * 59.99976 * 7 6 5 36 36 H 1.09001 * 109.47142 * 300.00160 * 8 7 6 37 37 H 1.09004 * 109.47006 * 60.00213 * 8 7 6 38 38 H 0.97006 * 119.99755 * 359.97438 * 9 8 7 39 39 H 1.09001 * 109.47332 * 299.99611 * 12 10 9 40 40 H 1.08996 * 109.47524 * 60.00287 * 12 10 9 41 41 H 0.97003 * 119.99847 * 179.97438 * 17 16 14 42 42 H 1.08009 * 119.99549 * 359.97438 * 23 22 3 43 43 H 1.08004 * 120.00839 * 180.27612 * 24 23 22 44 44 H 1.08004 * 120.00237 * 179.83967 * 25 24 23 45 45 H 1.07993 * 119.99848 * 180.02562 * 26 25 24 46 46 H 1.08000 * 119.99649 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3589 1.2632 0.7213 6 7 3.1596 0.8158 2.1062 7 6 4.4363 0.7625 2.8310 8 6 4.1887 0.2941 4.2664 9 7 5.4618 0.2414 4.9894 10 6 5.4885 -0.1474 6.2796 11 8 4.4587 -0.4542 6.8418 12 6 6.7981 -0.2010 7.0233 13 16 6.5052 -0.7552 8.7213 14 6 8.1543 -0.7272 9.3411 15 1 8.9678 -0.4248 8.6982 16 6 8.4080 -1.0928 10.6559 17 7 7.4165 -1.4609 11.4395 18 14 10.1565 -1.0639 11.3127 19 1 10.7001 0.3144 11.2123 20 1 10.1585 -1.4939 12.7340 21 1 11.0007 -1.9884 10.5140 22 6 2.2145 1.7644 -1.4207 23 6 2.5650 0.8520 -2.3982 24 6 2.7482 1.2722 -3.7023 25 6 2.5898 2.6065 -4.0272 26 6 2.2444 3.5198 -3.0487 27 6 2.0569 3.0988 -1.7455 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8020 2.2591 0.7217 32 1 4.0241 0.5693 0.2074 33 1 2.4960 1.4062 2.5851 34 1 5.1087 0.0649 2.3318 35 1 4.8876 1.7546 2.8457 36 1 3.5165 0.9920 4.7655 37 1 3.7373 -0.6980 4.2521 38 1 6.2856 0.4858 4.5393 39 1 7.4712 -0.8981 6.5242 40 1 7.2485 0.7915 7.0381 41 1 7.5938 -1.7168 12.3583 42 1 2.6928 -0.1898 -2.1435 43 1 3.0177 0.5586 -4.4669 44 1 2.7355 2.9353 -5.0456 45 1 2.1203 4.5621 -3.3026 46 1 1.7875 3.8125 -0.9810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:04 Heat of formation + Delta-G solvation = -57.493206 kcal Electronic energy + Delta-G solvation = -24931.057547 eV Core-core repulsion = 21139.833451 eV Total energy + Delta-G solvation = -3791.224096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14761 -39.16178 -38.09808 -36.60157 -34.30478 -32.52659 -32.41121 -31.31440 -30.34172 -28.81741 -27.12683 -25.97468 -25.42407 -23.33494 -22.95858 -22.34269 -21.19310 -20.32706 -17.85289 -17.59708 -17.20315 -16.41564 -16.30770 -15.97859 -15.90457 -15.45850 -15.06362 -14.87515 -14.79113 -14.68906 -14.43661 -13.88178 -13.79264 -13.76409 -13.47418 -13.16141 -13.10841 -12.90349 -12.52404 -12.20677 -11.99555 -11.77936 -11.67366 -11.56619 -11.43788 -11.14694 -11.03001 -11.02536 -10.75665 -10.02619 -9.80993 -9.40238 -9.35203 -9.21552 -9.04851 -8.86260 -8.79055 -8.22079 -6.48237 -6.19919 -3.90517 0.85705 0.97579 2.97937 3.13080 3.24647 3.25861 3.29405 3.31706 3.38646 3.58875 4.00759 4.22082 4.42585 4.42931 4.58086 4.61653 4.68882 4.71982 4.75274 4.92167 5.03935 5.06099 5.07637 5.12206 5.15054 5.18853 5.21944 5.27177 5.40926 5.46604 5.52164 5.61395 5.63717 5.80386 5.91763 5.94955 6.01247 6.08610 6.10661 6.15710 6.51884 6.55362 6.65567 6.84601 7.00181 7.60695 7.72365 8.36521 8.64073 9.25131 10.87443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.001432 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.560162 B =19553.984162 C =20118.824082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.134 3.866 4 H 0.068 0.932 5 C 0.069 3.931 6 N -0.677 5.677 7 C 0.051 3.949 8 C 0.123 3.877 9 N -0.739 5.739 10 C 0.532 3.468 11 O -0.516 6.516 12 C -0.153 4.153 13 S -0.060 6.060 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.115 4.115 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.342 0.658 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 9.876 -32.438 35.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.060 4.060 6 N -0.308 5.308 7 C -0.079 4.079 8 C -0.001 4.001 9 N -0.394 5.394 10 C 0.318 3.682 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.804 8.452 -31.461 35.002 hybrid contribution 2.668 1.756 -0.455 3.226 sum -10.135 10.208 -31.916 35.008 Atomic orbital electron populations 1.22782 0.81195 1.02875 0.99669 1.88012 1.19362 1.25804 1.94598 1.20921 0.95001 0.85775 0.90788 0.91404 1.22021 0.95586 0.99338 0.89069 1.60189 1.10863 1.57864 1.01883 1.22095 0.91830 1.00057 0.93882 1.21130 0.86406 1.02642 0.89947 1.45902 1.09817 1.71255 1.12463 1.20288 0.91135 0.75877 0.80895 1.90705 1.34796 1.46461 1.67064 1.23528 0.97001 1.05238 1.04615 1.85403 1.12493 1.86717 0.98711 1.22837 0.93117 1.52804 0.99748 0.90977 1.24989 0.98283 0.94526 0.95736 1.70011 1.31223 1.41895 1.07151 0.86225 0.82768 0.78638 0.77867 1.19971 1.20806 1.19938 1.20375 1.01124 0.93882 0.96197 1.21056 0.97441 1.00092 0.92371 1.21224 1.00320 0.96013 0.96583 1.21216 0.99484 0.93553 0.99411 1.21127 1.00193 0.99683 0.93101 1.21030 1.00206 0.95076 0.96711 0.93883 0.94519 0.89512 0.93655 0.89781 0.84043 0.90180 0.94644 0.91878 0.90571 0.76925 0.89180 0.89256 0.92133 0.85285 0.85952 0.86112 0.86013 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.31 16 2 O -0.36 -3.21 9.37 -35.23 -0.33 -3.54 16 3 C 0.13 0.97 2.52 -27.88 -0.07 0.90 16 4 H 0.07 0.42 7.70 -51.93 -0.40 0.02 16 5 C 0.07 0.51 5.36 -3.82 -0.02 0.49 16 6 N -0.68 -5.69 6.37 -113.78 -0.72 -6.42 16 7 C 0.05 0.44 5.80 -3.82 -0.02 0.42 16 8 C 0.12 1.47 5.93 -4.04 -0.02 1.44 16 9 N -0.74 -9.93 5.56 -60.30 -0.33 -10.27 16 10 C 0.53 10.09 7.85 -10.99 -0.09 10.00 16 11 O -0.52 -11.98 15.86 5.56 0.09 -11.89 16 12 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 17 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 18 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.11 -0.83 4.96 -104.63 -0.52 -1.35 16 23 C -0.09 -0.69 9.35 -39.59 -0.37 -1.06 16 24 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 25 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.12 -0.75 10.05 -39.58 -0.40 -1.14 16 27 C -0.11 -0.72 9.68 -39.58 -0.38 -1.11 16 28 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.34 2.57 8.73 -39.29 -0.34 2.22 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.13 0.98 7.64 -52.48 -0.40 0.58 16 43 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.12 0.50 8.06 -52.48 -0.42 0.08 16 45 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -35.56 405.76 -10.24 -45.79 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.37 Total: 1.56 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.18 Total: -8.39 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.33 Total: -42.24 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.24 Total: -15.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.56 -10.24 -45.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.698 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds