Wall clock time and date at job start Tue Mar 31 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 N 1.46901 * 109.47214 * 65.00079 * 5 3 2 7 7 C 1.46898 * 111.00176 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47191 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47386 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00259 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99636 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00243 * 180.02562 * 10 9 8 13 13 S 1.80994 * 109.47337 * 180.02562 * 12 10 9 14 14 C 1.76199 * 100.00064 * 179.97438 * 13 12 10 15 15 H 1.07994 * 119.99967 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99970 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00032 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46729 * 90.00270 * 18 16 14 20 20 H 1.48497 * 109.47380 * 210.00371 * 18 16 14 21 21 H 1.48502 * 109.47159 * 330.01000 * 18 16 14 22 22 C 1.50704 * 109.47175 * 149.99736 * 3 2 1 23 23 C 1.38236 * 120.00039 * 39.72451 * 22 3 2 24 24 C 1.38233 * 120.00077 * 179.79050 * 23 22 3 25 25 C 1.38239 * 119.99726 * 0.43731 * 24 23 22 26 26 C 1.38228 * 120.00042 * 359.81596 * 25 24 23 27 27 C 1.38231 * 120.00369 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 31 31 H 1.09003 * 109.47319 * 184.99990 * 5 3 2 32 32 H 1.09002 * 109.47191 * 305.00149 * 5 3 2 33 33 H 1.00906 * 110.99585 * 56.04092 * 6 5 3 34 34 H 1.08996 * 109.47340 * 300.00097 * 7 6 5 35 35 H 1.09002 * 109.47012 * 60.00042 * 7 6 5 36 36 H 1.09007 * 109.47584 * 300.00433 * 8 7 6 37 37 H 1.09002 * 109.47042 * 60.00141 * 8 7 6 38 38 H 0.96994 * 119.99583 * 359.97438 * 9 8 7 39 39 H 1.09007 * 109.46877 * 300.00373 * 12 10 9 40 40 H 1.09002 * 109.47165 * 59.99725 * 12 10 9 41 41 H 0.96998 * 120.00358 * 179.97438 * 17 16 14 42 42 H 1.08003 * 119.99846 * 359.97438 * 23 22 3 43 43 H 1.07996 * 119.99993 * 180.27983 * 24 23 22 44 44 H 1.07996 * 119.99665 * 179.83926 * 25 24 23 45 45 H 1.08002 * 119.99946 * 179.97438 * 26 25 24 46 46 H 1.08005 * 120.00708 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 7 0.9130 1.9268 -2.0994 7 6 1.0734 2.3746 -3.4892 8 6 -0.3037 2.5242 -4.1389 9 7 -0.1438 2.9703 -5.5252 10 6 -1.2296 3.1714 -6.2979 11 8 -2.3391 2.9826 -5.8457 12 6 -1.0652 3.6296 -7.7240 13 16 -2.6943 3.8082 -8.4921 14 6 -2.2166 4.3383 -10.1031 15 1 -1.1707 4.4563 -10.3447 16 6 -3.1845 4.6032 -11.0620 17 7 -4.4593 4.4590 -10.7677 18 14 -2.6781 5.1659 -12.7698 19 1 -2.4897 3.9815 -13.6455 20 1 -3.7371 6.0382 -13.3379 21 1 -1.4048 5.9252 -12.6835 22 6 3.3386 1.2639 0.7105 23 6 4.1871 0.1881 0.5272 24 6 5.4075 0.1520 1.1755 25 6 5.7754 1.1875 2.0142 26 6 4.9247 2.2608 2.2015 27 6 3.7063 2.2990 1.5498 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 2.7414 2.7273 -1.4439 32 1 2.8100 1.0318 -1.9815 33 1 0.3208 2.5591 -1.5820 34 1 1.5889 3.3348 -3.5044 35 1 1.6579 1.6396 -4.0426 36 1 -0.8190 1.5637 -4.1238 37 1 -0.8886 3.2590 -3.5856 38 1 0.7434 3.1216 -5.8866 39 1 -0.5491 4.5897 -7.7399 40 1 -0.4810 2.8940 -8.2770 41 1 -5.1358 4.6445 -11.4376 42 1 3.8979 -0.6229 -0.1248 43 1 6.0723 -0.6863 1.0288 44 1 6.7277 1.1581 2.5227 45 1 5.2120 3.0696 2.8570 46 1 3.0413 3.1373 1.6965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:09 Heat of formation + Delta-G solvation = -56.489186 kcal Electronic energy + Delta-G solvation = -25027.209486 eV Core-core repulsion = 21236.028928 eV Total energy + Delta-G solvation = -3791.180559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09589 -39.20309 -38.24403 -36.49260 -34.27007 -32.64235 -32.43140 -31.30426 -30.34550 -28.71668 -27.24236 -25.86174 -25.42663 -23.39287 -22.88144 -22.42567 -21.18247 -20.36943 -17.87557 -17.51318 -17.16270 -16.48529 -16.34064 -15.98429 -15.92720 -15.55834 -15.07196 -14.86026 -14.80770 -14.66265 -14.34041 -13.91387 -13.77690 -13.75788 -13.37822 -13.18582 -13.08414 -12.85387 -12.54509 -12.28331 -12.04640 -11.82408 -11.69328 -11.51104 -11.39568 -11.15963 -11.06450 -11.02719 -10.76651 -9.98784 -9.81959 -9.43963 -9.32223 -9.18604 -9.07371 -8.90888 -8.82653 -8.23956 -6.50306 -6.21855 -3.92525 0.87886 1.00522 2.94127 3.09227 3.22220 3.24884 3.28709 3.30405 3.45607 3.59155 3.98727 4.20207 4.43836 4.48426 4.54743 4.61188 4.67330 4.72300 4.75307 4.86961 5.02800 5.11527 5.13340 5.15616 5.18151 5.20955 5.22173 5.41778 5.46377 5.53236 5.60474 5.64503 5.69454 5.75524 5.87021 5.89843 6.03694 6.11798 6.13221 6.13752 6.43604 6.56909 6.60092 6.83547 6.94600 7.59304 7.68093 8.34964 8.60067 9.23445 10.85592 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028970 B = 0.001455 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.275887 B =19244.410175 C =19796.214912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.373 6.373 3 C 0.135 3.865 4 H 0.067 0.933 5 C 0.043 3.957 6 N -0.682 5.682 7 C 0.050 3.950 8 C 0.123 3.877 9 N -0.739 5.739 10 C 0.532 3.468 11 O -0.516 6.516 12 C -0.153 4.153 13 S -0.060 6.060 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.088 4.088 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.032 0.968 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.341 0.659 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.623 -5.957 26.657 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.292 6.292 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.086 4.086 6 N -0.314 5.314 7 C -0.079 4.079 8 C -0.001 4.001 9 N -0.394 5.394 10 C 0.318 3.682 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.091 0.909 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.129 4.129 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.618 -7.093 27.182 33.702 hybrid contribution 2.147 1.811 -1.617 3.241 sum 20.766 -5.282 25.565 33.357 Atomic orbital electron populations 1.22954 0.80184 1.02871 1.00963 1.87881 1.20477 1.25873 1.94972 1.20808 0.91655 0.86209 0.93658 0.91458 1.22544 0.91041 1.00482 0.94544 1.60386 1.14126 1.54289 1.02591 1.22104 0.97044 0.99258 0.89535 1.21132 0.96088 1.00888 0.82039 1.45896 1.09469 1.71485 1.12592 1.20298 0.84038 0.76487 0.87339 1.90708 1.24739 1.49398 1.74183 1.23529 1.08312 1.03858 0.94693 1.85402 0.99713 1.88149 1.10081 1.22871 0.95535 1.52693 0.97359 0.90922 1.24988 0.94468 0.94995 0.99092 1.70014 0.99669 1.45824 1.34763 0.86168 0.78326 0.78643 0.82356 1.20256 1.20740 1.19718 1.19677 0.95367 0.95615 0.98200 1.21050 0.93148 0.97650 0.98881 1.21220 0.96741 0.98839 0.97357 1.21210 0.99644 0.94275 0.98497 1.21104 0.94331 0.98620 0.99996 1.20992 0.97104 0.98231 0.96560 0.94888 0.90053 0.91163 0.94026 0.89678 0.84104 0.94446 0.90132 0.90660 0.91866 0.76893 0.89243 0.89173 0.92172 0.85365 0.85917 0.86075 0.85932 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.69 101.05 1.08 1.28 16 2 O -0.37 -3.43 9.66 -35.23 -0.34 -3.78 16 3 C 0.14 1.00 2.62 -27.88 -0.07 0.93 16 4 H 0.07 0.43 7.65 -51.93 -0.40 0.03 16 5 C 0.04 0.31 5.33 -3.82 -0.02 0.29 16 6 N -0.68 -5.13 4.50 -113.78 -0.51 -5.65 16 7 C 0.05 0.40 5.80 -3.83 -0.02 0.38 16 8 C 0.12 1.39 5.93 -4.04 -0.02 1.36 16 9 N -0.74 -9.63 5.56 -60.29 -0.33 -9.97 16 10 C 0.53 9.90 7.85 -10.99 -0.09 9.82 16 11 O -0.52 -11.77 15.86 5.55 0.09 -11.69 16 12 C -0.15 -3.08 6.16 36.00 0.22 -2.85 16 13 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 14 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 18 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C -0.09 -0.67 4.97 -104.62 -0.52 -1.20 16 23 C -0.09 -0.70 9.36 -39.58 -0.37 -1.07 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.74 10.05 -39.58 -0.40 -1.13 16 26 C -0.12 -0.76 10.05 -39.59 -0.40 -1.16 16 27 C -0.11 -0.75 9.67 -39.58 -0.38 -1.13 16 28 H 0.03 0.22 8.09 -51.93 -0.42 -0.20 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.56 6.20 -51.93 -0.32 0.24 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.34 2.25 8.66 -39.29 -0.34 1.91 16 34 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 39 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 40 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.13 1.00 7.77 -52.48 -0.41 0.59 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.12 0.61 8.04 -52.48 -0.42 0.19 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -35.16 402.19 -10.00 -45.17 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.27 Total: 1.47 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -1.19 Total: -8.70 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.11 Total: -41.05 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.25 Total: -15.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.16 -10.00 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.322 kcal (2) G-P(sol) polarization free energy of solvation -35.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds