Wall clock time and date at job start Tue Mar 31 2020 20:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99790 * 2 1 4 4 C 1.53005 * 109.46761 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47265 * 64.99696 * 4 3 2 6 6 C 1.37102 * 119.99989 * 264.46540 * 5 4 3 7 7 H 1.08000 * 119.99742 * 138.27135 * 6 5 4 8 8 C 1.38944 * 119.99995 * 318.27158 * 6 5 4 9 9 N 1.31407 * 120.00351 * 341.88648 * 8 6 5 10 10 Si 1.86808 * 119.99806 * 161.89455 * 8 6 5 11 11 H 1.48495 * 109.47496 * 59.99592 * 10 8 6 12 12 H 1.48502 * 109.47036 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46690 * 299.99776 * 10 8 6 14 14 C 1.34771 * 120.00014 * 84.47136 * 5 4 3 15 15 O 1.21292 * 120.00191 * 359.97438 * 14 5 4 16 16 C 1.50705 * 120.00303 * 179.97438 * 14 5 4 17 17 C 1.50693 * 109.47245 * 179.97438 * 16 14 5 18 18 N 1.29034 * 124.91840 * 90.00280 * 17 16 14 19 19 C 1.31777 * 117.12555 * 179.97438 * 18 17 16 20 20 C 1.50701 * 122.74767 * 179.97438 * 19 18 17 21 21 C 1.54885 * 110.48896 * 148.26488 * 20 19 18 22 22 C 1.55237 * 102.58994 * 156.67585 * 21 20 19 23 23 C 1.54263 * 104.23037 * 322.08253 * 22 21 20 24 24 C 1.53877 * 106.60015 * 23.61304 * 23 22 21 25 25 C 1.33638 * 114.50069 * 0.22983 * 19 18 17 26 26 S 1.70982 * 124.91818 * 270.00032 * 17 16 14 27 27 H 1.09002 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47159 * 300.00068 * 1 2 3 29 29 H 1.08998 * 109.47172 * 60.00740 * 1 2 3 30 30 H 1.08997 * 109.47233 * 59.99949 * 3 2 1 31 31 H 1.09001 * 109.46897 * 299.99090 * 3 2 1 32 32 H 1.09003 * 109.47048 * 304.99394 * 4 3 2 33 33 H 1.09003 * 109.46610 * 184.99872 * 4 3 2 34 34 H 0.97004 * 120.00193 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46700 * 59.99541 * 16 14 5 36 36 H 1.08997 * 109.46707 * 300.00056 * 16 14 5 37 37 H 1.09002 * 110.43364 * 25.72141 * 20 19 18 38 38 H 1.09000 * 110.75827 * 275.06794 * 21 20 19 39 39 H 1.09008 * 110.75421 * 38.43690 * 21 20 19 40 40 H 1.09004 * 110.46296 * 203.39710 * 22 21 20 41 41 H 1.08990 * 110.47082 * 80.77795 * 22 21 20 42 42 H 1.08999 * 110.03612 * 264.32717 * 23 22 21 43 43 H 1.08998 * 110.06992 * 142.91908 * 23 22 21 44 44 H 1.08997 * 110.03125 * 240.71604 * 24 23 22 45 45 H 1.09003 * 110.07691 * 119.30365 * 24 23 22 46 46 H 1.07998 * 126.03303 * 179.76950 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 4.2062 -0.7861 -1.3046 7 1 3.8777 -1.3574 -2.1603 8 6 4.8623 -1.4197 -0.2565 9 7 5.5681 -0.7148 0.5989 10 14 4.7412 -3.2739 -0.0634 11 1 5.2833 -3.9345 -1.2778 12 1 5.5244 -3.7001 1.1241 13 1 3.3189 -3.6608 0.1174 14 6 4.1541 1.3213 -2.3533 15 8 3.9499 2.5160 -2.3075 16 6 4.6076 0.6833 -3.6412 17 6 4.7286 1.7393 -4.7095 18 7 5.7966 2.4191 -4.9584 19 6 5.7313 3.3062 -5.9307 20 6 6.9017 4.1686 -6.3275 21 6 6.8559 4.4805 -7.8439 22 6 7.6899 5.7858 -7.9462 23 6 7.3083 6.5799 -6.6799 24 6 6.8072 5.5517 -5.6506 25 6 4.5405 3.3821 -6.5325 26 16 3.4704 2.2099 -5.7674 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 6.0264 -1.1572 1.3305 35 1 3.8790 -0.0655 -3.9518 36 1 5.5761 0.2069 -3.4893 37 1 7.8404 3.6796 -6.0667 38 1 7.3187 3.6775 -8.4176 39 1 5.8305 4.6502 -8.1726 40 1 7.4173 6.3430 -8.8425 41 1 8.7558 5.5580 -7.9470 42 1 6.5171 7.2932 -6.9107 43 1 8.1809 7.1038 -6.2899 44 1 5.7728 5.7660 -5.3820 45 1 7.4364 5.5757 -4.7609 46 1 4.2804 4.0441 -7.3452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160822821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:11 Heat of formation + Delta-G solvation = -44.928016 kcal Electronic energy + Delta-G solvation = -27241.839297 eV Core-core repulsion = 23451.160068 eV Total energy + Delta-G solvation = -3790.679229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.95123 -38.68409 -37.46474 -36.90293 -34.68510 -32.13159 -31.59301 -29.86993 -28.78349 -28.50311 -27.31098 -25.81521 -24.72560 -23.72301 -21.94745 -20.63507 -20.32463 -19.08854 -18.84411 -17.70167 -16.85461 -16.20653 -15.73176 -15.54764 -15.45724 -15.33586 -14.61069 -14.43653 -14.35489 -13.97843 -13.71126 -13.67392 -13.42612 -13.25400 -12.57100 -12.50887 -12.00376 -11.77144 -11.73742 -11.31200 -11.27303 -11.24556 -11.14997 -11.13167 -11.03494 -10.99873 -10.85672 -10.68697 -10.65444 -10.39640 -10.37977 -10.06314 -9.23085 -9.12320 -9.00543 -8.95966 -8.54272 -8.22951 -7.46532 -6.33127 -4.05923 1.11319 1.78308 2.15446 3.17038 3.18985 3.26553 3.30797 3.86668 4.15100 4.29733 4.49693 4.54482 4.64412 4.73448 4.91870 5.07133 5.26350 5.31271 5.43205 5.50089 5.53228 5.57487 5.62444 5.65150 5.70788 5.73184 5.80899 5.85941 5.93569 5.97122 5.98749 6.05327 6.08170 6.18217 6.27566 6.28456 6.34176 6.38726 6.45479 6.56795 6.73104 7.23242 7.47077 7.81798 8.01025 8.22445 8.36556 9.11880 9.48076 9.91918 10.70898 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.002995 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.975266 B = 9345.288393 C = 9906.096186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.425 5.425 6 C -0.333 4.333 7 H 0.086 0.914 8 C 0.053 3.947 9 N -0.862 5.862 10 Si 0.915 3.085 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.480 3.520 15 O -0.601 6.601 16 C -0.051 4.051 17 C 0.108 3.892 18 N -0.471 5.471 19 C 0.086 3.914 20 C -0.017 4.017 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.278 4.278 26 S 0.106 5.894 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 6.736 -11.956 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.001 4.001 5 N -0.143 5.143 6 C -0.461 4.461 7 H 0.103 0.897 8 C -0.154 4.154 9 N -0.498 5.498 10 Si 0.741 3.259 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.196 1.196 14 C 0.267 3.733 15 O -0.487 6.487 16 C -0.094 4.094 17 C -0.171 4.171 18 N -0.184 5.184 19 C -0.047 4.047 20 C -0.038 4.038 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.417 4.417 26 S 0.362 5.638 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.526 6.684 -11.537 13.570 hybrid contribution 0.307 -0.236 0.132 0.409 sum -2.219 6.449 -11.405 13.288 Atomic orbital electron populations 1.22645 0.83419 1.01730 0.98846 1.88132 1.17380 1.27739 1.95050 1.23057 0.96571 0.84305 0.98732 1.21344 0.89029 0.98923 0.90755 1.43185 1.56550 1.07288 1.07287 1.19214 1.37103 0.82044 1.07714 0.89687 1.25338 0.93522 0.99842 0.96691 1.69918 1.27252 1.36826 1.15794 0.86210 0.78626 0.83163 0.77888 1.19835 1.21101 1.19607 1.19982 0.81089 0.86279 0.85939 1.90554 1.57140 1.15112 1.85875 1.20105 1.05535 0.93730 0.90057 1.26588 0.90791 0.99982 0.99753 1.66063 1.28575 1.07533 1.16272 1.20057 0.95043 0.96435 0.93141 1.20522 0.94988 0.93537 0.94796 1.22694 1.00542 0.97340 0.94946 1.22402 0.99947 0.96058 0.97726 1.22136 1.00738 0.97843 0.95379 1.22170 1.01999 0.92834 0.98236 1.26580 0.96893 1.08615 1.09632 1.83765 1.18694 1.32701 1.28606 0.90415 0.95172 0.94988 0.94276 0.93992 0.87559 0.91206 0.92024 0.88144 0.86224 0.89183 0.91267 0.91080 0.91706 0.91531 0.91931 0.91850 0.91545 0.91328 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.66 10.44 -35.23 -0.37 -8.03 16 3 C 0.05 1.06 6.24 37.16 0.23 1.29 16 4 C 0.12 2.94 5.26 -4.04 -0.02 2.92 16 5 N -0.43 -10.60 2.45 -114.81 -0.28 -10.88 16 6 C -0.33 -8.33 8.29 -14.93 -0.12 -8.45 16 7 H 0.09 2.02 7.21 -52.49 -0.38 1.64 16 8 C 0.05 1.32 4.95 -17.47 -0.09 1.24 16 9 N -0.86 -22.79 11.66 55.50 0.65 -22.14 16 10 Si 0.91 19.67 29.59 -169.99 -5.03 14.64 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 C 0.48 11.66 7.59 -10.99 -0.08 11.57 16 15 O -0.60 -15.80 15.71 5.55 0.09 -15.72 16 16 C -0.05 -1.05 5.01 -29.04 -0.15 -1.19 16 17 C 0.11 2.11 5.88 -13.46 -0.08 2.03 16 18 N -0.47 -9.35 10.53 -8.06 -0.08 -9.44 16 19 C 0.09 1.42 5.67 -84.23 -0.48 0.94 16 20 C -0.02 -0.23 3.33 -90.11 -0.30 -0.53 16 21 C -0.12 -1.19 6.17 -24.55 -0.15 -1.34 16 22 C -0.12 -1.08 6.84 -24.88 -0.17 -1.25 16 23 C -0.12 -1.19 6.80 -25.61 -0.17 -1.36 16 24 C -0.11 -1.44 6.36 -25.61 -0.16 -1.60 16 25 C -0.28 -4.11 10.35 29.12 0.30 -3.81 16 26 S 0.11 1.71 23.18 -107.50 -2.49 -0.78 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 2.70 5.81 -51.93 -0.30 2.40 16 33 H 0.07 1.69 7.59 -51.93 -0.39 1.30 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.10 1.83 7.70 -51.93 -0.40 1.43 16 36 H 0.12 2.50 8.10 -51.93 -0.42 2.08 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.68 6.15 -51.92 -0.32 0.37 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.17 1.97 6.64 -52.49 -0.35 1.62 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -30.53 387.67 -9.19 -39.72 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.18 Total: 4.73 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.33 Total: 2.04 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.28 Total: -42.46 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.28 Total: -23.74 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.49 Total: -0.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.53 -9.19 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.208 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds