Wall clock time and date at job start Tue Mar 31 2020 20:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99790 * 2 1 4 4 C 1.53005 * 109.46761 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47265 * 64.99696 * 4 3 2 6 6 C 1.37102 * 119.99989 * 264.46540 * 5 4 3 7 7 H 1.08000 * 119.99742 * 138.27135 * 6 5 4 8 8 C 1.38944 * 119.99995 * 318.27158 * 6 5 4 9 9 N 1.31407 * 120.00351 * 341.88648 * 8 6 5 10 10 Si 1.86808 * 119.99806 * 161.89455 * 8 6 5 11 11 H 1.48495 * 109.47496 * 59.99592 * 10 8 6 12 12 H 1.48502 * 109.47036 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46690 * 299.99776 * 10 8 6 14 14 C 1.34771 * 120.00014 * 84.47136 * 5 4 3 15 15 O 1.21292 * 120.00191 * 359.97438 * 14 5 4 16 16 C 1.50705 * 120.00303 * 179.97438 * 14 5 4 17 17 C 1.50693 * 109.47245 * 179.97438 * 16 14 5 18 18 N 1.29034 * 124.91840 * 90.00280 * 17 16 14 19 19 C 1.31777 * 117.12555 * 179.97438 * 18 17 16 20 20 C 1.50701 * 122.74767 * 179.97438 * 19 18 17 21 21 C 1.54885 * 110.48896 * 148.26488 * 20 19 18 22 22 C 1.55237 * 102.58994 * 156.67585 * 21 20 19 23 23 C 1.54263 * 104.23037 * 322.08253 * 22 21 20 24 24 C 1.53877 * 106.60015 * 23.61304 * 23 22 21 25 25 C 1.33638 * 114.50069 * 0.22983 * 19 18 17 26 26 S 1.70982 * 124.91818 * 270.00032 * 17 16 14 27 27 H 1.09002 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47159 * 300.00068 * 1 2 3 29 29 H 1.08998 * 109.47172 * 60.00740 * 1 2 3 30 30 H 1.08997 * 109.47233 * 59.99949 * 3 2 1 31 31 H 1.09001 * 109.46897 * 299.99090 * 3 2 1 32 32 H 1.09003 * 109.47048 * 304.99394 * 4 3 2 33 33 H 1.09003 * 109.46610 * 184.99872 * 4 3 2 34 34 H 0.97004 * 120.00193 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.46700 * 59.99541 * 16 14 5 36 36 H 1.08997 * 109.46707 * 300.00056 * 16 14 5 37 37 H 1.09002 * 110.43364 * 25.72141 * 20 19 18 38 38 H 1.09000 * 110.75827 * 275.06794 * 21 20 19 39 39 H 1.09008 * 110.75421 * 38.43690 * 21 20 19 40 40 H 1.09004 * 110.46296 * 203.39710 * 22 21 20 41 41 H 1.08990 * 110.47082 * 80.77795 * 22 21 20 42 42 H 1.08999 * 110.03612 * 264.32717 * 23 22 21 43 43 H 1.08998 * 110.06992 * 142.91908 * 23 22 21 44 44 H 1.08997 * 110.03125 * 240.71604 * 24 23 22 45 45 H 1.09003 * 110.07691 * 119.30365 * 24 23 22 46 46 H 1.07998 * 126.03303 * 179.76950 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 4.2062 -0.7861 -1.3046 7 1 3.8777 -1.3574 -2.1603 8 6 4.8623 -1.4197 -0.2565 9 7 5.5681 -0.7148 0.5989 10 14 4.7412 -3.2739 -0.0634 11 1 5.2833 -3.9345 -1.2778 12 1 5.5244 -3.7001 1.1241 13 1 3.3189 -3.6608 0.1174 14 6 4.1541 1.3213 -2.3533 15 8 3.9499 2.5160 -2.3075 16 6 4.6076 0.6833 -3.6412 17 6 4.7286 1.7393 -4.7095 18 7 5.7966 2.4191 -4.9584 19 6 5.7313 3.3062 -5.9307 20 6 6.9017 4.1686 -6.3275 21 6 6.8559 4.4805 -7.8439 22 6 7.6899 5.7858 -7.9462 23 6 7.3083 6.5799 -6.6799 24 6 6.8072 5.5517 -5.6506 25 6 4.5405 3.3821 -6.5325 26 16 3.4704 2.2099 -5.7674 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 6.0264 -1.1572 1.3305 35 1 3.8790 -0.0655 -3.9518 36 1 5.5761 0.2069 -3.4893 37 1 7.8404 3.6796 -6.0667 38 1 7.3187 3.6775 -8.4176 39 1 5.8305 4.6502 -8.1726 40 1 7.4173 6.3430 -8.8425 41 1 8.7558 5.5580 -7.9470 42 1 6.5171 7.2932 -6.9107 43 1 8.1809 7.1038 -6.2899 44 1 5.7728 5.7660 -5.3820 45 1 7.4364 5.5757 -4.7609 46 1 4.2804 4.0441 -7.3452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160822821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:09 Heat of formation + Delta-G solvation = -62.577380 kcal Electronic energy + Delta-G solvation = -27242.604631 eV Core-core repulsion = 23451.160068 eV Total energy + Delta-G solvation = -3791.444562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25922 -40.45321 -38.66142 -38.33058 -36.58297 -33.55734 -33.52330 -31.36895 -29.93441 -29.62073 -28.49918 -27.26716 -26.56999 -25.10173 -23.54811 -21.81073 -21.23780 -20.91156 -20.06490 -19.12067 -18.50898 -17.96323 -17.19784 -16.98663 -16.72299 -16.53930 -16.23399 -16.10023 -15.93592 -15.39317 -15.19842 -15.09168 -14.41281 -14.29687 -14.26182 -13.93142 -13.61667 -13.41457 -13.07940 -12.85732 -12.84246 -12.66514 -12.53240 -12.45808 -12.20600 -12.12611 -12.09190 -12.03186 -11.95119 -11.80214 -11.52901 -11.28372 -11.01406 -10.59905 -10.55887 -10.44904 -10.23448 -9.56752 -9.40919 -8.25622 -6.03987 -0.22189 0.48423 0.84480 1.46724 1.53115 1.60428 1.83642 1.99446 2.37183 2.86155 2.99070 3.16937 3.21820 3.67761 3.76516 3.82185 4.10720 4.23166 4.24635 4.27372 4.38748 4.44252 4.49498 4.53054 4.55746 4.59876 4.61964 4.63448 4.68280 4.73145 4.75736 4.81551 4.86425 4.88554 4.99286 5.11543 5.17101 5.30473 5.30761 5.33142 5.43595 5.50796 5.52226 6.03591 6.40131 6.42208 6.90527 7.17252 7.56700 8.00135 8.79135 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.002995 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.975266 B = 9345.288393 C = 9906.096186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.122 3.878 5 N -0.435 5.435 6 C -0.342 4.342 7 H 0.095 0.905 8 C 0.011 3.989 9 N -0.897 5.897 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.469 3.531 15 O -0.628 6.628 16 C -0.041 4.041 17 C 0.066 3.934 18 N -0.503 5.503 19 C 0.063 3.937 20 C -0.021 4.021 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.260 4.260 26 S 0.145 5.855 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.270 0.730 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 6.810 -14.164 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.002 4.002 5 N -0.153 5.153 6 C -0.470 4.470 7 H 0.113 0.887 8 C -0.192 4.192 9 N -0.534 5.534 10 Si 0.803 3.197 11 H -0.185 1.185 12 H -0.213 1.213 13 H -0.194 1.194 14 C 0.258 3.742 15 O -0.516 6.516 16 C -0.084 4.084 17 C -0.212 4.212 18 N -0.218 5.218 19 C -0.069 4.069 20 C -0.042 4.042 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.398 4.398 26 S 0.400 5.600 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.707 6.748 -13.751 15.760 hybrid contribution 0.626 -0.184 0.818 1.047 sum -3.081 6.564 -12.932 14.827 Atomic orbital electron populations 1.22894 0.80582 1.03401 1.00263 1.88063 1.20496 1.27582 1.95314 1.22790 0.94237 0.84719 0.99508 1.21269 0.91503 0.97393 0.90055 1.43417 1.56587 1.07587 1.07674 1.19540 1.37027 0.82213 1.08223 0.88696 1.26142 0.92942 1.03931 0.96220 1.70033 1.28310 1.38560 1.16473 0.85210 0.78408 0.78033 0.78026 1.18539 1.21264 1.19448 1.20597 0.80524 0.86105 0.87017 1.90511 1.58282 1.16279 1.86535 1.19925 1.05120 0.94411 0.88907 1.26393 0.92531 1.01078 1.01214 1.66052 1.29692 1.08409 1.17617 1.20517 0.96845 0.96610 0.92952 1.20645 0.93208 0.92995 0.97363 1.22695 1.01622 0.98338 0.92165 1.22398 1.00000 0.95161 0.97930 1.22116 1.01326 0.97207 0.94884 1.22164 1.00774 0.93742 0.98676 1.27053 0.95718 1.07685 1.09361 1.83496 1.17152 1.32354 1.26955 0.88688 0.93088 0.94150 0.91619 0.94871 0.89405 0.92918 0.92067 0.86202 0.87468 0.90640 0.90620 0.90014 0.89507 0.91095 0.90793 0.91123 0.93112 0.93125 0.77621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.35 10.44 -148.98 -1.56 -17.91 16 3 C 0.07 2.70 6.24 71.98 0.45 3.15 16 4 C 0.12 6.01 5.26 86.38 0.45 6.46 16 5 N -0.44 -22.32 2.45 -635.54 -1.56 -23.88 16 6 C -0.34 -17.37 8.29 84.04 0.70 -16.67 16 7 H 0.10 4.51 7.21 -2.91 -0.02 4.49 16 8 C 0.01 0.55 4.95 84.93 0.42 0.97 16 9 N -0.90 -48.70 11.66 21.66 0.25 -48.45 16 10 Si 0.98 40.34 29.59 68.60 2.03 42.37 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 12 H -0.29 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 C 0.47 23.54 7.59 87.66 0.67 24.21 16 15 O -0.63 -34.22 15.71 -3.07 -0.05 -34.27 16 16 C -0.04 -1.72 5.01 29.10 0.15 -1.57 16 17 C 0.07 2.60 5.88 88.52 0.52 3.12 16 18 N -0.50 -20.44 10.53 -179.40 -1.89 -22.33 16 19 C 0.06 2.04 5.67 41.52 0.24 2.28 16 20 C -0.02 -0.54 3.33 -10.46 -0.03 -0.58 16 21 C -0.11 -1.97 6.17 32.01 0.20 -1.77 16 22 C -0.12 -1.70 6.84 31.79 0.22 -1.48 16 23 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 24 C -0.12 -2.88 6.36 31.32 0.20 -2.68 16 25 C -0.26 -7.16 10.35 66.78 0.69 -6.47 16 26 S 0.14 4.51 23.18 -56.49 -1.31 3.20 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 4.65 5.81 -2.39 -0.01 4.64 16 33 H 0.05 2.70 7.59 -2.39 -0.02 2.68 16 34 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.12 4.41 7.70 -2.39 -0.02 4.39 16 36 H 0.11 4.69 8.10 -2.39 -0.02 4.67 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.27 6.15 -2.38 -0.01 1.26 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.40 7.83 -2.39 -0.02 1.38 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.21 4.00 6.64 -2.91 -0.02 3.98 16 Total: -1.00 -68.18 387.67 3.21 -64.97 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.97 Total: 27.18 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.32 Total: 9.12 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.20 Total: -94.66 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.60 Total: -52.18 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.31 Total: 3.20 kcal Total: -68.18 3.21 -64.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160822821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.393 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds