Wall clock time and date at job start Tue Mar 31 2020 21:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 119.99612 * 2 1 4 4 H 1.48495 * 109.47083 * 239.99825 * 3 2 1 5 5 H 1.48503 * 109.47310 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46962 * 119.99852 * 3 2 1 7 7 C 1.38804 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99707 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00545 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47660 * 184.93197 * 10 9 7 12 12 H 1.09004 * 109.99333 * 54.21617 * 11 10 9 13 13 C 1.54329 * 109.98898 * 293.18440 * 11 10 9 14 14 C 1.55162 * 103.01989 * 218.66035 * 13 11 10 15 15 C 1.54908 * 101.57710 * 35.30712 * 14 13 11 16 16 N 1.47023 * 109.88465 * 175.31317 * 11 10 9 17 17 C 1.34769 * 125.64843 * 298.39986 * 16 11 10 18 18 O 1.21285 * 120.00123 * 354.64829 * 17 16 11 19 19 C 1.50704 * 119.99925 * 174.65570 * 17 16 11 20 20 C 1.53005 * 109.46991 * 180.02562 * 19 17 16 21 21 C 1.50704 * 109.46991 * 180.02562 * 20 19 17 22 22 C 1.38254 * 119.99654 * 265.25176 * 21 20 19 23 23 C 1.38206 * 120.07194 * 180.25459 * 22 21 20 24 24 C 1.38261 * 120.06921 * 359.48975 * 23 22 21 25 25 C 1.38369 * 119.99876 * 0.25177 * 24 23 22 26 26 F 1.35101 * 120.03458 * 180.02562 * 25 24 23 27 27 C 1.38363 * 120.00075 * 84.99322 * 21 20 19 28 28 F 1.35094 * 120.03944 * 359.97438 * 27 21 20 29 29 H 0.96993 * 119.99931 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99630 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47274 * 64.93087 * 10 9 7 32 32 H 1.09000 * 109.47304 * 304.93416 * 10 9 7 33 33 H 1.09006 * 110.85201 * 100.19952 * 13 11 10 34 34 H 1.08996 * 110.51953 * 336.97024 * 13 11 10 35 35 H 1.08996 * 111.00679 * 277.23742 * 14 13 11 36 36 H 1.09002 * 111.00708 * 153.37736 * 14 13 11 37 37 H 1.09007 * 110.36372 * 204.14912 * 15 14 13 38 38 H 1.09001 * 110.36530 * 81.83303 * 15 14 13 39 39 H 1.08996 * 109.47428 * 59.99737 * 19 17 16 40 40 H 1.09004 * 109.46683 * 299.99468 * 19 17 16 41 41 H 1.08996 * 109.47282 * 59.99608 * 20 19 17 42 42 H 1.08999 * 109.46497 * 299.99155 * 20 19 17 43 43 H 1.08004 * 119.96424 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.96904 * 179.76187 * 23 22 21 45 45 H 1.08004 * 120.00055 * 180.23414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0686 -4.8171 -0.1235 12 1 0.4348 -4.6744 -0.9988 13 6 0.1948 -4.9031 1.1457 14 6 0.0588 -6.4319 1.3735 15 6 1.4483 -6.9395 0.9137 16 7 1.7996 -6.0876 -0.2371 17 6 2.6537 -6.4167 -1.2262 18 8 2.7994 -5.6739 -2.1738 19 6 3.4276 -7.7079 -1.1550 20 6 4.3180 -7.8377 -2.3925 21 6 5.0915 -9.1292 -2.3216 22 6 6.3717 -9.1403 -1.7997 23 6 7.0844 -10.3229 -1.7388 24 6 6.5147 -11.4991 -2.1898 25 6 5.2316 -11.4922 -2.7078 26 9 4.6740 -12.6413 -3.1482 27 6 4.5184 -10.3046 -2.7738 28 9 3.2653 -10.2955 -3.2785 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3880 -0.0002 31 1 2.6169 -3.7537 0.9314 32 1 2.7495 -3.6772 -0.8419 33 1 -0.7821 -4.4502 0.9756 34 1 0.6984 -4.4308 1.9891 35 1 -0.7345 -6.8502 0.7541 36 1 -0.1103 -6.6565 2.4266 37 1 1.3884 -7.9841 0.6082 38 1 2.1798 -6.8184 1.7127 39 1 2.7326 -8.5466 -1.1174 40 1 4.0487 -7.7102 -0.2592 41 1 5.0131 -6.9990 -2.4297 42 1 3.6972 -7.8352 -3.2885 43 1 6.8170 -8.2231 -1.4435 44 1 8.0859 -10.3290 -1.3343 45 1 7.0713 -12.4233 -2.1382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270201521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:45 Heat of formation + Delta-G solvation = -93.034773 kcal Electronic energy + Delta-G solvation = -28671.743222 eV Core-core repulsion = 24325.137542 eV Total energy + Delta-G solvation = -4346.605681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.78766 -48.86480 -40.16863 -39.41341 -37.48310 -34.54756 -34.24211 -31.79871 -31.29395 -30.71543 -30.01373 -28.64116 -25.55376 -24.96153 -23.22664 -23.07578 -22.09194 -21.79792 -20.43216 -18.80707 -18.25919 -17.67262 -17.47144 -17.04576 -16.69286 -16.61876 -16.35103 -15.39243 -15.26132 -15.20266 -14.88631 -14.59919 -14.43632 -13.95417 -13.66103 -13.56525 -13.35813 -13.32635 -12.94857 -12.85711 -12.68366 -12.54100 -12.40022 -12.16860 -12.05951 -11.55464 -11.47736 -11.28128 -11.12433 -10.89704 -10.80018 -10.53310 -10.39779 -10.04445 -9.77870 -9.62074 -9.26788 -9.14730 -8.81658 -8.42739 -6.87517 -5.72030 -3.00301 0.51241 0.52829 2.77347 2.88232 3.10281 3.37887 3.47728 3.51681 3.53242 3.96848 4.07129 4.28399 4.43122 4.59631 4.62418 4.65322 4.66210 4.80795 4.83871 5.00771 5.04835 5.25008 5.30156 5.37644 5.39592 5.45337 5.49392 5.57264 5.59216 5.62804 5.74512 5.81186 5.88776 5.92380 5.95929 6.06865 6.09184 6.19153 6.33587 6.43059 6.55903 6.84576 6.98430 7.69174 7.74957 8.32908 8.47157 9.57771 10.14406 10.50040 11.51001 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.002245 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.665916 B =12468.062068 C =13353.154223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.148 3.852 11 C 0.129 3.871 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.134 4.134 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.525 3.475 18 O -0.528 6.528 19 C -0.129 4.129 20 C -0.069 4.069 21 C -0.084 4.084 22 C -0.097 4.097 23 C -0.098 4.098 24 C -0.133 4.133 25 C 0.067 3.933 26 F -0.130 7.130 27 C 0.069 3.931 28 F -0.125 7.125 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.014 0.986 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.590 -27.118 0.904 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.020 3.980 11 C 0.026 3.974 12 H 0.094 0.906 13 C -0.160 4.160 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.404 6.404 19 C -0.169 4.169 20 C -0.106 4.106 21 C -0.085 4.085 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.152 4.152 25 C 0.047 3.953 26 F -0.109 7.109 27 C 0.049 3.951 28 F -0.103 7.103 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.774 -26.658 0.277 28.754 hybrid contribution -0.201 0.590 -0.116 0.634 sum 10.573 -26.067 0.161 28.130 Atomic orbital electron populations 1.69649 1.05060 1.25701 1.57994 1.24725 0.95556 0.97626 1.03158 0.86245 0.78497 0.83490 0.77838 1.21274 1.21688 1.21317 1.19163 0.90976 0.84035 1.42415 0.91340 1.42197 1.05758 0.99707 1.89586 1.20918 0.93644 0.85220 0.98235 1.21827 0.93537 0.83463 0.98523 0.90558 1.22681 1.00682 0.95006 0.97615 1.22796 0.96038 0.96666 1.01739 1.22321 0.96921 0.94455 0.88655 1.48556 1.44586 1.17747 1.23915 1.20140 0.79280 0.87770 0.81472 1.90766 1.64956 1.52747 1.31972 1.21607 0.99028 0.96362 0.99933 1.20350 0.98340 0.93096 0.98830 1.19969 0.95726 0.94003 0.98817 1.21143 0.92887 0.99283 0.98183 1.21112 1.00520 0.91344 0.98603 1.21105 0.93048 1.00637 1.00365 1.17715 0.93522 0.81137 1.02935 1.91535 1.85228 1.46844 1.87246 1.17587 0.81617 0.93377 1.02546 1.91540 1.36957 1.97050 1.84756 0.93513 0.78309 0.96810 0.94712 0.89771 0.89937 0.90807 0.89974 0.90962 0.91317 0.89092 0.88613 0.88754 0.89313 0.83926 0.84110 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.16 5.45 -59.91 -0.33 -19.49 16 10 C 0.15 3.24 5.65 -4.04 -0.02 3.22 16 11 C 0.13 2.27 2.92 -66.95 -0.20 2.07 16 12 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 13 C -0.12 -1.76 6.09 -24.89 -0.15 -1.91 16 14 C -0.13 -1.39 7.09 -24.58 -0.17 -1.56 16 15 C 0.10 1.02 6.65 -2.53 -0.02 1.00 16 16 N -0.61 -8.86 3.06 -163.01 -0.50 -9.36 16 17 C 0.53 7.90 7.57 -10.99 -0.08 7.82 16 18 O -0.53 -10.33 15.17 5.55 0.08 -10.25 16 19 C -0.13 -1.32 4.77 -27.88 -0.13 -1.45 16 20 C -0.07 -0.70 4.41 -27.88 -0.12 -0.82 16 21 C -0.08 -0.73 5.14 -104.57 -0.54 -1.27 16 22 C -0.10 -0.63 9.68 -39.59 -0.38 -1.01 16 23 C -0.10 -0.51 10.04 -39.58 -0.40 -0.91 16 24 C -0.13 -0.84 10.02 -39.52 -0.40 -1.23 16 25 C 0.07 0.60 7.31 -39.36 -0.29 0.32 16 26 F -0.13 -1.33 17.18 2.25 0.04 -1.29 16 27 C 0.07 0.68 7.25 -39.37 -0.29 0.40 16 28 F -0.12 -1.46 16.48 2.25 0.04 -1.42 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.38 7.45 -40.82 -0.30 10.08 16 31 H 0.01 0.31 8.03 -51.93 -0.42 -0.11 16 32 H 0.03 0.85 6.90 -51.93 -0.36 0.49 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.27 7.77 -51.93 -0.40 0.87 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.58 7.51 -51.93 -0.39 0.19 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.83 7.77 -51.93 -0.40 0.42 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.98 8.01 -51.93 -0.42 0.56 16 42 H 0.09 1.05 7.75 -51.93 -0.40 0.65 16 43 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.14 0.37 8.06 -52.48 -0.42 -0.06 16 45 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -34.95 381.72 -9.09 -44.05 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.45 Total: 4.93 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.43 Total: -2.87 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.10 Total: -56.85 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.95 -9.09 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270201521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.989 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds