Wall clock time and date at job start Tue Mar 31 2020 21:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48491 * 109.47487 * 89.99245 * 3 2 1 5 5 H 1.48506 * 109.46907 * 329.99268 * 3 2 1 6 6 H 1.48500 * 109.47391 * 209.99749 * 3 2 1 7 7 C 1.38818 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99964 * 323.76825 * 7 2 1 9 9 N 1.36932 * 119.99695 * 143.76745 * 7 2 1 10 10 C 1.46929 * 120.63237 * 332.19397 * 9 7 2 11 11 C 1.53196 * 108.77255 * 233.58460 * 10 9 7 12 12 C 1.53034 * 109.31636 * 305.36157 * 11 10 9 13 13 C 1.53045 * 109.53607 * 61.36426 * 12 11 10 14 14 H 1.08999 * 109.49635 * 58.62349 * 13 12 11 15 15 N 1.46505 * 109.50044 * 178.68457 * 13 12 11 16 16 C 1.34771 * 120.00267 * 205.00025 * 15 13 12 17 17 O 1.21279 * 120.00103 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00051 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47112 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.46744 * 180.02562 * 19 18 16 21 21 C 1.38203 * 119.99811 * 264.71376 * 20 19 18 22 22 C 1.38432 * 119.99825 * 179.77080 * 21 20 19 23 23 F 1.35104 * 120.00166 * 180.27417 * 22 21 20 24 24 C 1.38468 * 120.00117 * 0.53513 * 22 21 20 25 25 C 1.38161 * 120.00098 * 359.72619 * 24 22 21 26 26 C 1.38428 * 120.00475 * 85.00244 * 20 19 18 27 27 F 1.35105 * 119.99800 * 359.96828 * 26 20 19 28 28 C 1.46922 * 120.63159 * 151.90888 * 9 7 2 29 29 H 0.97002 * 119.99508 * 174.93907 * 1 2 3 30 30 H 1.08999 * 109.58792 * 353.36790 * 10 9 7 31 31 H 1.08994 * 109.58941 * 113.65827 * 10 9 7 32 32 H 1.09006 * 109.49754 * 65.31803 * 11 10 9 33 33 H 1.09000 * 109.49483 * 185.41069 * 11 10 9 34 34 H 1.08997 * 109.46672 * 181.38396 * 12 11 10 35 35 H 1.09005 * 109.46290 * 301.35015 * 12 11 10 36 36 H 0.97004 * 119.99518 * 24.99730 * 15 13 12 37 37 H 1.08999 * 109.46763 * 300.00246 * 18 16 15 38 38 H 1.09001 * 109.46667 * 59.99884 * 18 16 15 39 39 H 1.09002 * 109.46832 * 299.99987 * 19 18 16 40 40 H 1.08994 * 109.47266 * 59.99755 * 19 18 16 41 41 H 1.08000 * 120.00197 * 0.03112 * 21 20 19 42 42 H 1.08003 * 120.00142 * 179.70028 * 24 22 21 43 43 H 1.07992 * 120.00332 * 179.97438 * 25 24 22 44 44 H 1.08998 * 109.58991 * 246.19997 * 28 9 7 45 45 H 1.09003 * 109.58582 * 6.62838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 1.4477 2.6526 -0.7002 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.6270 -2.0467 0.5537 9 7 3.1810 -1.3171 -0.7004 10 6 3.4255 -0.4903 -1.8901 11 6 3.7954 -1.4074 -3.0602 12 6 4.9769 -2.2921 -2.6561 13 6 4.5779 -3.1661 -1.4648 14 1 3.7168 -3.7776 -1.7345 15 7 5.6991 -4.0351 -1.0985 16 6 5.4687 -5.1993 -0.4598 17 8 4.3332 -5.5278 -0.1887 18 6 6.6220 -6.0934 -0.0836 19 6 6.0902 -7.3410 0.6246 20 6 7.2435 -8.2347 1.0014 21 6 7.6126 -9.2744 0.1690 22 6 8.6751 -10.0924 0.5128 23 9 9.0394 -11.1054 -0.3035 24 6 9.3611 -9.8759 1.6960 25 6 8.9887 -8.8398 2.5307 26 6 7.9296 -8.0180 2.1840 27 9 7.5655 -7.0048 3.0002 28 6 4.2192 -2.2650 -0.2734 29 1 -0.4849 -0.8368 -0.0741 30 1 2.5242 0.0709 -2.1366 31 1 4.2442 0.2015 -1.6924 32 1 2.9412 -2.0350 -3.3147 33 1 4.0726 -0.8021 -3.9232 34 1 5.2579 -2.9284 -3.4952 35 1 5.8229 -1.6635 -2.3780 36 1 6.6072 -3.7725 -1.3158 37 1 7.1612 -6.3889 -0.9836 38 1 7.2958 -5.5558 0.5836 39 1 5.5507 -7.0457 1.5246 40 1 5.4166 -7.8783 -0.0429 41 1 7.0747 -9.4461 -0.7516 42 1 10.1870 -10.5171 1.9665 43 1 9.5234 -8.6711 3.4537 44 1 5.1030 -1.7166 0.0526 45 1 3.8418 -2.8750 0.5473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316953255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:18 Heat of formation + Delta-G solvation = -90.377815 kcal Electronic energy + Delta-G solvation = -28588.236187 eV Core-core repulsion = 24241.745721 eV Total energy + Delta-G solvation = -4346.490466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.35069 -49.26517 -39.94697 -39.26926 -37.59604 -34.56802 -34.26640 -32.57198 -30.99992 -30.75692 -30.15318 -28.83702 -25.35492 -24.98016 -23.42655 -22.60501 -21.78007 -21.54136 -20.15568 -19.54124 -18.07285 -17.67927 -17.64570 -17.25066 -16.89128 -16.25040 -15.85983 -15.68353 -15.55851 -14.89538 -14.83991 -14.65560 -14.22867 -14.03826 -13.90553 -13.62452 -13.49515 -13.33371 -13.10619 -12.87207 -12.74525 -12.64013 -12.33738 -12.03491 -11.97239 -11.56350 -11.41743 -11.28621 -11.03156 -10.62100 -10.60591 -10.14296 -9.96504 -9.75065 -9.59031 -9.50599 -9.22725 -8.95582 -8.91046 -8.20616 -6.96611 -6.32856 -3.21045 0.47406 0.53519 2.77351 2.85309 3.28783 3.52409 3.59168 3.69464 3.73015 3.75375 4.06927 4.21804 4.48527 4.63514 4.68360 4.70979 4.84729 4.91787 5.04341 5.17947 5.28234 5.30173 5.34565 5.37963 5.47394 5.48541 5.52383 5.54989 5.58632 5.85487 5.87543 5.88485 5.98065 6.06833 6.29001 6.32440 6.35429 6.47764 6.56254 6.66497 6.80362 6.83679 7.01184 7.66746 8.12882 8.39116 8.49929 9.08165 9.68064 10.27298 11.07556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002153 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.792685 B =13003.539210 C =13544.386080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.003 3.997 3 Si 1.015 2.985 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.360 4.360 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.139 3.861 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.087 0.913 15 N -0.724 5.724 16 C 0.509 3.491 17 O -0.534 6.534 18 C -0.135 4.135 19 C -0.068 4.068 20 C -0.083 4.083 21 C -0.122 4.122 22 C 0.090 3.910 23 F -0.136 7.136 24 C -0.131 4.131 25 C -0.123 4.123 26 C 0.093 3.907 27 F -0.129 7.129 28 C 0.141 3.859 29 H 0.268 0.732 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.018 0.982 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.709 -18.068 -1.401 29.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.201 4.201 3 Si 0.845 3.155 4 H -0.226 1.226 5 H -0.220 1.220 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.014 3.986 11 C -0.175 4.175 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.105 0.895 15 N -0.375 5.375 16 C 0.295 3.705 17 O -0.410 6.410 18 C -0.175 4.175 19 C -0.106 4.106 20 C -0.084 4.084 21 C -0.141 4.141 22 C 0.071 3.929 23 F -0.114 7.114 24 C -0.150 4.150 25 C -0.142 4.142 26 C 0.074 3.926 27 F -0.107 7.107 28 C 0.014 3.986 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.228 0.772 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.164 0.836 44 H 0.036 0.964 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.625 -16.671 -1.114 27.328 hybrid contribution 0.790 -1.508 -0.057 1.703 sum 22.415 -18.179 -1.171 28.884 Atomic orbital electron populations 1.70876 1.06984 1.29830 1.45789 1.26128 0.95931 1.00712 0.97298 0.84653 0.76564 0.77399 0.76909 1.22629 1.22050 1.19589 1.20065 0.98015 0.98195 1.32524 0.91762 1.44294 1.16626 1.43986 1.26997 1.21428 0.99175 0.92307 0.85723 1.22074 0.97400 0.98897 0.99168 1.21665 0.99017 0.97913 0.96690 1.21796 0.88556 0.91254 0.96436 0.89471 1.46140 1.10568 1.20926 1.59880 1.20489 0.90509 0.81731 0.77776 1.90757 1.23607 1.73411 1.53274 1.21627 0.97656 0.95914 1.02284 1.20330 0.93922 0.93551 1.02753 1.19854 0.98129 0.97202 0.93259 1.20983 0.97037 0.94850 1.01243 1.17667 0.96763 0.88181 0.90285 1.91529 1.90974 1.57404 1.71524 1.20990 1.01345 0.99260 0.93358 1.21015 0.96883 0.95017 1.01248 1.17596 0.96653 0.88457 0.89928 1.91553 1.90845 1.57154 1.71161 1.21325 0.91731 0.91349 0.94230 0.92259 0.91463 0.95183 0.91812 0.92332 0.92713 0.92155 0.77204 0.88803 0.88767 0.89049 0.89115 0.83544 0.83760 0.83592 0.96370 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.70 55.49 0.76 -27.15 16 2 C 0.00 0.10 4.81 -17.43 -0.08 0.01 16 3 Si 1.02 25.38 27.00 -169.99 -4.59 20.79 16 4 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.12 4.73 56.52 0.27 -5.86 16 7 C -0.36 -10.39 9.70 -15.06 -0.15 -10.53 16 8 H 0.06 2.03 8.06 -52.49 -0.42 1.61 16 9 N -0.60 -14.55 2.71 -172.06 -0.47 -15.02 16 10 C 0.14 3.00 4.37 -3.71 -0.02 2.98 16 11 C -0.14 -2.34 6.08 -26.61 -0.16 -2.50 16 12 C -0.11 -1.69 5.35 -26.69 -0.14 -1.84 16 13 C 0.12 2.14 2.62 -67.58 -0.18 1.96 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 15 N -0.72 -9.56 5.08 -53.46 -0.27 -9.83 16 16 C 0.51 7.14 7.80 -10.99 -0.09 7.05 16 17 O -0.53 -10.10 15.64 5.56 0.09 -10.01 16 18 C -0.13 -1.26 5.68 -27.88 -0.16 -1.42 16 19 C -0.07 -0.67 4.41 -27.89 -0.12 -0.79 16 20 C -0.08 -0.71 5.14 -104.57 -0.54 -1.24 16 21 C -0.12 -0.92 9.66 -39.52 -0.38 -1.30 16 22 C 0.09 0.68 7.30 -39.43 -0.29 0.39 16 23 F -0.14 -1.14 17.27 2.25 0.04 -1.10 16 24 C -0.13 -0.81 10.02 -39.53 -0.40 -1.21 16 25 C -0.12 -0.81 10.02 -39.52 -0.40 -1.21 16 26 C 0.09 0.81 7.24 -39.43 -0.29 0.52 16 27 F -0.13 -1.33 16.56 2.25 0.04 -1.30 16 28 C 0.14 2.97 6.12 -3.49 -0.02 2.95 16 29 H 0.27 8.29 8.73 -40.82 -0.36 7.94 16 30 H 0.07 1.57 5.82 -51.93 -0.30 1.27 16 31 H 0.03 0.63 6.59 -51.93 -0.34 0.29 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.39 3.79 8.60 -40.82 -0.35 3.44 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 40 H 0.09 0.90 8.01 -51.93 -0.42 0.48 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 43 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -33.97 373.48 -8.73 -42.70 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.56 Total: 1.45 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.40 Total: -6.17 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.02 Total: -52.00 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.08 Total: -2.39 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.59 Total: 20.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.97 -8.73 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316953255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.676 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds