Wall clock time and date at job start Tue Mar 31 2020 21:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48491 * 109.47487 * 89.99245 * 3 2 1 5 5 H 1.48506 * 109.46907 * 329.99268 * 3 2 1 6 6 H 1.48500 * 109.47391 * 209.99749 * 3 2 1 7 7 C 1.38818 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99964 * 323.76825 * 7 2 1 9 9 N 1.36932 * 119.99695 * 143.76745 * 7 2 1 10 10 C 1.46929 * 120.63237 * 332.19397 * 9 7 2 11 11 C 1.53196 * 108.77255 * 233.58460 * 10 9 7 12 12 C 1.53034 * 109.31636 * 305.36157 * 11 10 9 13 13 C 1.53045 * 109.53607 * 61.36426 * 12 11 10 14 14 H 1.08999 * 109.49635 * 58.62349 * 13 12 11 15 15 N 1.46505 * 109.50044 * 178.68457 * 13 12 11 16 16 C 1.34771 * 120.00267 * 205.00025 * 15 13 12 17 17 O 1.21279 * 120.00103 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00051 * 179.97438 * 16 15 13 19 19 C 1.52998 * 109.47112 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.46744 * 180.02562 * 19 18 16 21 21 C 1.38203 * 119.99811 * 264.71376 * 20 19 18 22 22 C 1.38432 * 119.99825 * 179.77080 * 21 20 19 23 23 F 1.35104 * 120.00166 * 180.27417 * 22 21 20 24 24 C 1.38468 * 120.00117 * 0.53513 * 22 21 20 25 25 C 1.38161 * 120.00098 * 359.72619 * 24 22 21 26 26 C 1.38428 * 120.00475 * 85.00244 * 20 19 18 27 27 F 1.35105 * 119.99800 * 359.96828 * 26 20 19 28 28 C 1.46922 * 120.63159 * 151.90888 * 9 7 2 29 29 H 0.97002 * 119.99508 * 174.93907 * 1 2 3 30 30 H 1.08999 * 109.58792 * 353.36790 * 10 9 7 31 31 H 1.08994 * 109.58941 * 113.65827 * 10 9 7 32 32 H 1.09006 * 109.49754 * 65.31803 * 11 10 9 33 33 H 1.09000 * 109.49483 * 185.41069 * 11 10 9 34 34 H 1.08997 * 109.46672 * 181.38396 * 12 11 10 35 35 H 1.09005 * 109.46290 * 301.35015 * 12 11 10 36 36 H 0.97004 * 119.99518 * 24.99730 * 15 13 12 37 37 H 1.08999 * 109.46763 * 300.00246 * 18 16 15 38 38 H 1.09001 * 109.46667 * 59.99884 * 18 16 15 39 39 H 1.09002 * 109.46832 * 299.99987 * 19 18 16 40 40 H 1.08994 * 109.47266 * 59.99755 * 19 18 16 41 41 H 1.08000 * 120.00197 * 0.03112 * 21 20 19 42 42 H 1.08003 * 120.00142 * 179.70028 * 24 22 21 43 43 H 1.07992 * 120.00332 * 179.97438 * 25 24 22 44 44 H 1.08998 * 109.58991 * 246.19997 * 28 9 7 45 45 H 1.09003 * 109.58582 * 6.62838 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 1.4000 5 1 1.4477 2.6526 -0.7002 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.6270 -2.0467 0.5537 9 7 3.1810 -1.3171 -0.7004 10 6 3.4255 -0.4903 -1.8901 11 6 3.7954 -1.4074 -3.0602 12 6 4.9769 -2.2921 -2.6561 13 6 4.5779 -3.1661 -1.4648 14 1 3.7168 -3.7776 -1.7345 15 7 5.6991 -4.0351 -1.0985 16 6 5.4687 -5.1993 -0.4598 17 8 4.3332 -5.5278 -0.1887 18 6 6.6220 -6.0934 -0.0836 19 6 6.0902 -7.3410 0.6246 20 6 7.2435 -8.2347 1.0014 21 6 7.6126 -9.2744 0.1690 22 6 8.6751 -10.0924 0.5128 23 9 9.0394 -11.1054 -0.3035 24 6 9.3611 -9.8759 1.6960 25 6 8.9887 -8.8398 2.5307 26 6 7.9296 -8.0180 2.1840 27 9 7.5655 -7.0048 3.0002 28 6 4.2192 -2.2650 -0.2734 29 1 -0.4849 -0.8368 -0.0741 30 1 2.5242 0.0709 -2.1366 31 1 4.2442 0.2015 -1.6924 32 1 2.9412 -2.0350 -3.3147 33 1 4.0726 -0.8021 -3.9232 34 1 5.2579 -2.9284 -3.4952 35 1 5.8229 -1.6635 -2.3780 36 1 6.6072 -3.7725 -1.3158 37 1 7.1612 -6.3889 -0.9836 38 1 7.2958 -5.5558 0.5836 39 1 5.5507 -7.0457 1.5246 40 1 5.4166 -7.8783 -0.0429 41 1 7.0747 -9.4461 -0.7516 42 1 10.1870 -10.5171 1.9665 43 1 9.5234 -8.6711 3.4537 44 1 5.1030 -1.7166 0.0526 45 1 3.8418 -2.8750 0.5473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316953255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:17 Heat of formation + Delta-G solvation = -112.356522 kcal Electronic energy + Delta-G solvation = -28589.189256 eV Core-core repulsion = 24241.745721 eV Total energy + Delta-G solvation = -4347.443535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96995 -49.94503 -41.09697 -39.98375 -39.11076 -36.03672 -35.15593 -34.35792 -32.60626 -31.73994 -31.01226 -30.01068 -26.91367 -26.19842 -24.10321 -23.81503 -23.51575 -22.42797 -21.43888 -21.03190 -19.34338 -18.69940 -18.38874 -18.27409 -17.84281 -17.26466 -16.89180 -16.68507 -16.42269 -16.34136 -15.99179 -15.56176 -15.41952 -15.39616 -15.17299 -15.00726 -14.51802 -14.39297 -14.30092 -13.92725 -13.76780 -13.63450 -13.58315 -13.48678 -13.35034 -12.70245 -12.61604 -12.51752 -12.12119 -12.04257 -11.97220 -11.78101 -11.69238 -11.38603 -11.18121 -10.91664 -10.51748 -10.15631 -10.12688 -9.56733 -9.03807 -8.62348 -5.47938 -0.11817 -0.00130 1.50057 1.56828 1.64436 1.76817 2.12198 2.35044 2.58218 2.93656 3.10466 3.16987 3.40555 3.52527 3.62461 3.79359 3.86699 3.96966 4.02376 4.06129 4.12566 4.18880 4.20897 4.35772 4.45198 4.58768 4.69849 4.70714 4.74169 4.77207 4.94141 4.94744 4.98859 5.00417 5.03456 5.09554 5.10129 5.13317 5.19086 5.22115 5.41607 5.56856 5.75808 5.80234 6.22091 6.60415 6.89127 7.32316 7.58989 8.09541 8.72611 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021856 B = 0.002153 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.792685 B =13003.539210 C =13544.386080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 1.072 2.928 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.227 1.227 7 C -0.357 4.357 8 H 0.011 0.989 9 N -0.613 5.613 10 C 0.131 3.869 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.138 3.862 14 H 0.045 0.955 15 N -0.708 5.708 16 C 0.504 3.496 17 O -0.593 6.593 18 C -0.120 4.120 19 C -0.066 4.066 20 C -0.088 4.088 21 C -0.122 4.122 22 C 0.082 3.918 23 F -0.141 7.141 24 C -0.121 4.121 25 C -0.116 4.116 26 C 0.075 3.925 27 F -0.144 7.144 28 C 0.142 3.858 29 H 0.250 0.750 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.419 0.581 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.157 0.843 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.043 0.957 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.688 -17.799 -3.036 33.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.247 4.247 3 Si 0.895 3.105 4 H -0.226 1.226 5 H -0.221 1.221 6 H -0.151 1.151 7 C -0.486 4.486 8 H 0.028 0.972 9 N -0.338 5.338 10 C 0.006 3.994 11 C -0.170 4.170 12 C -0.142 4.142 13 C 0.031 3.969 14 H 0.063 0.937 15 N -0.360 5.360 16 C 0.292 3.708 17 O -0.473 6.473 18 C -0.160 4.160 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.140 4.140 22 C 0.063 3.937 23 F -0.120 7.120 24 C -0.139 4.139 25 C -0.135 4.135 26 C 0.056 3.944 27 F -0.123 7.123 28 C 0.016 3.984 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.257 0.743 37 H 0.148 0.852 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.175 0.825 42 H 0.188 0.812 43 H 0.186 0.814 44 H 0.060 0.940 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 26.694 -16.423 -2.781 31.465 hybrid contribution -0.786 -1.758 0.507 1.991 sum 25.908 -18.181 -2.275 31.732 Atomic orbital electron populations 1.71010 1.08217 1.28745 1.49203 1.27445 0.95826 1.04514 0.96945 0.83951 0.77000 0.72323 0.77232 1.22592 1.22058 1.15099 1.19806 0.99766 0.96566 1.32439 0.97157 1.44350 1.16081 1.45302 1.28059 1.21600 0.98804 0.93034 0.85922 1.21988 0.97777 0.98635 0.98594 1.21627 0.98587 0.97757 0.96187 1.21319 0.88902 0.90815 0.95879 0.93671 1.45902 1.10768 1.20064 1.59306 1.21384 0.90919 0.82033 0.76443 1.90747 1.26426 1.74692 1.55408 1.21619 0.95716 0.94607 1.04029 1.20205 0.94433 0.94235 1.01462 1.19648 0.97872 0.97595 0.93825 1.21054 0.97130 0.94371 1.01487 1.17823 0.97030 0.88111 0.90770 1.91520 1.91019 1.57639 1.71791 1.21281 1.01368 0.98914 0.92348 1.21250 0.96021 0.94241 1.01975 1.17879 0.97704 0.88854 0.90010 1.91515 1.91154 1.57960 1.71626 1.21374 0.91207 0.90987 0.94876 0.94163 0.93898 0.92928 0.94238 0.88302 0.89336 0.89175 0.74323 0.85180 0.87079 0.91871 0.89723 0.82526 0.81182 0.81388 0.93960 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.92 13.70 21.65 0.30 -60.62 16 2 C -0.05 -3.01 4.81 84.86 0.41 -2.60 16 3 Si 1.07 51.58 27.00 68.60 1.85 53.43 16 4 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.23 -9.27 4.73 99.48 0.47 -8.80 16 7 C -0.36 -21.71 9.70 84.04 0.82 -20.90 16 8 H 0.01 0.73 8.06 -2.92 -0.02 0.71 16 9 N -0.61 -30.34 2.71 -698.26 -1.89 -32.23 16 10 C 0.13 5.36 4.37 86.36 0.38 5.74 16 11 C -0.13 -4.11 6.08 30.67 0.19 -3.92 16 12 C -0.10 -2.63 5.35 30.62 0.16 -2.46 16 13 C 0.14 4.59 2.62 45.22 0.12 4.71 16 14 H 0.04 1.90 7.58 -2.39 -0.02 1.89 16 15 N -0.71 -17.24 5.08 -441.46 -2.24 -19.48 16 16 C 0.50 13.97 7.80 87.66 0.68 14.65 16 17 O -0.59 -23.73 15.64 -3.03 -0.05 -23.78 16 18 C -0.12 -2.05 5.68 29.85 0.17 -1.88 16 19 C -0.07 -1.30 4.41 29.85 0.13 -1.17 16 20 C -0.09 -1.41 5.14 -19.83 -0.10 -1.51 16 21 C -0.12 -1.63 9.66 22.31 0.22 -1.41 16 22 C 0.08 1.05 7.30 22.37 0.16 1.22 16 23 F -0.14 -2.08 17.27 44.97 0.78 -1.30 16 24 C -0.12 -1.15 10.02 22.31 0.22 -0.92 16 25 C -0.12 -1.25 10.02 22.31 0.22 -1.03 16 26 C 0.07 1.20 7.24 22.37 0.16 1.37 16 27 F -0.14 -2.94 16.56 44.97 0.74 -2.19 16 28 C 0.14 6.03 6.12 86.51 0.53 6.56 16 29 H 0.25 16.65 8.73 -92.71 -0.81 15.84 16 30 H 0.04 1.96 5.82 -2.39 -0.01 1.94 16 31 H 0.05 1.95 6.59 -2.39 -0.02 1.93 16 32 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.42 6.26 8.60 -92.71 -0.80 5.46 16 37 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.60 7.75 -2.39 -0.02 1.58 16 40 H 0.08 1.74 8.01 -2.39 -0.02 1.72 16 41 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 43 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.02 0.91 7.93 -2.39 -0.02 0.89 16 Total: -1.00 -82.32 373.48 3.90 -78.42 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -0.06 Total: 11.34 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.47 Total: -3.58 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -3.84 Total: -112.34 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 1.52 Total: -3.49 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.85 Total: 53.43 kcal Total: -82.32 3.90 -78.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316953255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.938 kcal (2) G-P(sol) polarization free energy of solvation -82.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds