Wall clock time and date at job start Tue Mar 31 2020 21:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00030 * 2 1 4 4 H 1.48501 * 109.46903 * 269.99816 * 3 2 1 5 5 H 1.48499 * 109.46808 * 29.99748 * 3 2 1 6 6 H 1.48500 * 109.47298 * 149.99754 * 3 2 1 7 7 C 1.38815 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99492 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00397 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00199 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46762 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.05425 * 54.96889 * 11 10 9 13 13 C 1.53869 * 110.03216 * 293.54374 * 11 10 9 14 14 C 1.54266 * 106.60031 * 240.71686 * 13 11 10 15 15 C 1.54894 * 104.31305 * 336.32486 * 14 13 11 16 16 C 1.54266 * 110.02878 * 176.37997 * 11 10 9 17 17 H 1.09007 * 110.48724 * 24.08149 * 16 11 10 18 18 N 1.46504 * 110.48593 * 261.57665 * 16 11 10 19 19 C 1.34772 * 119.99863 * 155.00140 * 18 16 11 20 20 O 1.21278 * 120.00282 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99730 * 179.97438 * 19 18 16 22 22 C 1.50705 * 109.47201 * 180.02562 * 21 19 18 23 23 C 1.38255 * 120.00191 * 100.00164 * 22 21 19 24 24 C 1.38213 * 120.07032 * 179.97438 * 23 22 21 25 25 C 1.38250 * 120.07173 * 359.97438 * 24 23 22 26 26 C 1.38368 * 120.00069 * 359.97438 * 25 24 23 27 27 F 1.35102 * 120.03930 * 180.02562 * 26 25 24 28 28 C 1.38376 * 119.99736 * 279.72300 * 22 21 19 29 29 F 1.35096 * 120.03593 * 0.02562 * 28 22 21 30 30 H 0.97003 * 120.00420 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99291 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46796 * 60.00143 * 10 9 7 33 33 H 1.08998 * 109.46879 * 299.99996 * 10 9 7 34 34 H 1.09001 * 110.02983 * 121.43438 * 13 11 10 35 35 H 1.08995 * 110.03881 * 0.02562 * 13 11 10 36 36 H 1.09002 * 110.48629 * 95.07240 * 14 13 11 37 37 H 1.08998 * 110.48744 * 217.58143 * 14 13 11 38 38 H 1.08996 * 110.75388 * 156.31523 * 15 14 13 39 39 H 1.08993 * 110.76071 * 279.69749 * 15 14 13 40 40 H 0.96996 * 119.99772 * 335.00031 * 18 16 11 41 41 H 1.08997 * 109.47490 * 299.99832 * 21 19 18 42 42 H 1.09003 * 109.47522 * 59.99965 * 21 19 18 43 43 H 1.08000 * 119.96253 * 359.97435 * 23 22 21 44 44 H 1.08006 * 119.96218 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00188 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3739 -4.7221 -0.8370 13 6 0.2829 -4.8448 1.3268 14 6 0.5916 -6.2008 1.9945 15 6 1.0063 -7.1207 0.8194 16 6 1.8199 -6.1613 -0.0903 17 1 2.8384 -6.0515 0.2823 18 7 1.8305 -6.6507 -1.4712 19 6 2.8071 -7.4829 -1.8836 20 8 3.6774 -7.8262 -1.1119 21 6 2.8177 -7.9867 -3.3038 22 6 4.0040 -8.8939 -3.5062 23 6 3.8384 -10.2661 -3.4732 24 6 4.9253 -11.0995 -3.6591 25 6 6.1802 -10.5627 -3.8791 26 6 6.3490 -9.1898 -3.9138 27 9 7.5749 -8.6644 -4.1292 28 6 5.2579 -8.3535 -3.7308 29 9 5.4195 -7.0128 -3.7683 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.6848 -3.7145 0.8906 33 1 2.6848 -3.7145 -0.8894 34 1 -0.7861 -4.7593 1.1320 35 1 0.6119 -4.0283 1.9695 36 1 1.4109 -6.0979 2.7061 37 1 -0.2963 -6.5926 2.4907 38 1 1.6291 -7.9423 1.1733 39 1 0.1282 -7.4980 0.2956 40 1 1.1347 -6.3758 -2.0885 41 1 1.8996 -8.5406 -3.4998 42 1 2.8852 -7.1415 -3.9888 43 1 2.8588 -10.6873 -3.3019 44 1 4.7941 -12.1712 -3.6325 45 1 7.0288 -11.2149 -4.0238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320162064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:20 Heat of formation + Delta-G solvation = -104.406815 kcal Electronic energy + Delta-G solvation = -28833.673467 eV Core-core repulsion = 24486.574657 eV Total energy + Delta-G solvation = -4347.098809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.64207 -48.72009 -40.25552 -39.14593 -37.89587 -34.47385 -33.63819 -33.12846 -31.37145 -30.61539 -28.85599 -28.48182 -26.92318 -24.46556 -23.14284 -22.86208 -22.13089 -20.82394 -20.44394 -19.37006 -18.13889 -17.59099 -17.40986 -17.20744 -16.89410 -16.43554 -16.25486 -15.23829 -15.14449 -15.09807 -14.85868 -14.58911 -14.56099 -14.36563 -13.80963 -13.55527 -13.49226 -13.23455 -13.03591 -12.82334 -12.56249 -12.37496 -12.17098 -12.14062 -11.78177 -11.55247 -11.29498 -10.89528 -10.84961 -10.75870 -10.59903 -10.44024 -10.14034 -10.02836 -9.90633 -9.69594 -9.22417 -9.00925 -8.95187 -8.85784 -6.90656 -5.75663 -3.03803 0.61463 0.64856 2.57014 2.89516 3.29063 3.44934 3.50295 3.50634 3.51999 4.02678 4.13465 4.32109 4.54803 4.57228 4.66498 4.70394 4.81067 4.83653 4.95927 5.06462 5.09869 5.40123 5.48069 5.49596 5.55685 5.61135 5.61840 5.65650 5.72114 5.73531 5.83694 5.87687 5.92248 6.06818 6.20474 6.26806 6.31833 6.42706 6.51280 6.52301 6.66227 6.81310 6.92666 7.47752 7.72362 8.18360 8.43577 9.54977 10.12473 10.47767 11.47271 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.002591 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.714917 B =10806.129138 C =12459.269268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.102 4.102 12 H 0.076 0.924 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.131 4.131 16 C 0.146 3.854 17 H 0.096 0.904 18 N -0.717 5.717 19 C 0.516 3.484 20 O -0.534 6.534 21 C -0.107 4.107 22 C -0.071 4.071 23 C -0.091 4.091 24 C -0.101 4.101 25 C -0.128 4.128 26 C 0.067 3.933 27 F -0.129 7.129 28 C 0.087 3.913 29 F -0.122 7.122 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 -26.400 -7.968 27.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.041 3.959 17 H 0.114 0.886 18 N -0.368 5.368 19 C 0.301 3.699 20 O -0.410 6.410 21 C -0.146 4.146 22 C -0.073 4.073 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.147 4.147 26 C 0.047 3.953 27 F -0.108 7.108 28 C 0.066 3.934 29 F -0.101 7.101 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.439 -26.424 -7.406 27.799 hybrid contribution 0.095 1.556 -0.401 1.610 sum 4.534 -24.868 -7.807 26.456 Atomic orbital electron populations 1.69654 1.05079 1.25594 1.58031 1.24721 0.95522 0.97641 1.03125 0.86197 0.78700 0.83850 0.77525 1.21748 1.21775 1.20754 1.19241 0.91054 0.84199 1.42377 0.91269 1.42340 1.05808 0.99884 1.89470 1.20732 0.92925 0.85223 0.97859 1.22182 0.97701 0.93566 0.98695 0.90598 1.22126 0.99788 0.97365 0.95996 1.22319 1.01006 0.95498 0.97232 1.22896 0.99513 0.97861 0.96682 1.22023 1.00898 0.92765 0.80238 0.88558 1.46044 1.28758 1.48373 1.13589 1.20288 0.81565 0.78878 0.89125 1.90729 1.36913 1.57476 1.55911 1.20657 0.97564 1.00349 0.96074 1.19261 0.92351 0.94796 1.00847 1.20985 1.00068 0.91281 0.98572 1.21019 0.91336 1.00644 0.98946 1.21086 0.99557 0.92111 1.01927 1.17666 0.79724 0.92053 1.05899 1.91537 1.39879 1.87013 1.92327 1.17506 0.93377 0.77704 1.04785 1.91556 1.96079 1.28730 1.93694 0.93568 0.78261 0.96150 0.96515 0.91860 0.90197 0.91577 0.91789 0.91527 0.91443 0.76451 0.86907 0.87113 0.84294 0.84170 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.47 5.34 -59.90 -0.32 -18.79 16 10 C 0.16 3.27 5.29 -4.04 -0.02 3.25 16 11 C -0.10 -1.59 2.71 -89.50 -0.24 -1.83 16 12 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 13 C -0.11 -1.71 6.13 -25.62 -0.16 -1.87 16 14 C -0.12 -1.51 6.82 -25.07 -0.17 -1.68 16 15 C -0.13 -1.55 6.61 -24.55 -0.16 -1.72 16 16 C 0.15 1.99 2.76 -66.08 -0.18 1.81 16 17 H 0.10 1.56 7.26 -51.93 -0.38 1.18 16 18 N -0.72 -8.32 5.16 -52.02 -0.27 -8.59 16 19 C 0.52 6.43 7.82 -10.99 -0.09 6.35 16 20 O -0.53 -8.82 15.60 5.56 0.09 -8.74 16 21 C -0.11 -0.92 5.56 -29.03 -0.16 -1.09 16 22 C -0.07 -0.71 4.43 -104.56 -0.46 -1.17 16 23 C -0.09 -0.67 9.67 -39.58 -0.38 -1.05 16 24 C -0.10 -0.66 10.04 -39.59 -0.40 -1.05 16 25 C -0.13 -1.02 10.02 -39.53 -0.40 -1.41 16 26 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 27 F -0.13 -1.61 17.18 2.25 0.04 -1.58 16 28 C 0.09 1.06 7.14 -39.36 -0.28 0.78 16 29 F -0.12 -1.78 16.57 2.25 0.04 -1.74 16 30 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.38 10.05 7.50 -40.82 -0.31 9.75 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 3.66 8.37 -40.82 -0.34 3.31 16 41 H 0.11 0.57 8.00 -51.93 -0.42 0.15 16 42 H 0.11 0.89 7.94 -51.93 -0.41 0.47 16 43 H 0.14 0.65 8.04 -52.49 -0.42 0.22 16 44 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 45 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -34.70 383.25 -9.01 -43.70 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.42 Total: 7.41 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.64 Total: -7.62 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.14 Total: -54.92 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.70 -9.01 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320162064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.703 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds